BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32030.1
Length=868
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933765 jgi|Araly1|933765|scaffold_401753.1 933 0.0
Ahg933764 jgi|Araly1|933764|scaffold_401752.1 409 2e-113
> Ahg933765 jgi|Araly1|933765|scaffold_401753.1
Length=607
Score = 933 bits (505), Expect = 0.0
Identities = 575/609 (94%), Gaps = 4/609 (1%)
Strand=Plus/Plus
Query 75 AAGTAACCAAGAAAAAGTCAATGGAGATGGACTCAACTACTACGATCAAACCGGAGACCC 134
||||||||||||| |||||||||||||| |||||| ||| || |||||||| |||||| |
Sbjct 1 AAGTAACCAAGAACAAGTCAATGGAGATCGACTCATCTAGTATGATCAAACTGGAGACTC 60
Query 135 TATCCACCGTGAGTTCCTCACC-TCCGGAGAAAATCCATCTCCGGCCAATGACTCTTTCC 193
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 61 TATCCACCGTGAGTTCCTCACCAT-CGGAGAAAATCCATCTCCGGCCAATGACTCTTTCC 119
Query 194 GACGTCGACGATTTCATGGTTTGGGCCACTGACTCAAACGTCACACGCTTTTGCACGTGG 253
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 120 GACGTCGACGATTTCATGGTCTGGGCCACTGACTCAAACGTCACACGCTTTTGCACGTGG 179
Query 254 GAGCCTTACACTAGCCGAGAAGCCGCGATCGCGTACTTAAACGACGCTC-TTTTGCCACA 312
|||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||
Sbjct 180 GAGCCTTACACTAGCCGAGAAGCCGCAATCGCGTACTTAAACGACG-TCGTTTTGCCACA 238
Query 313 CCCTTGGCTTAGAGCTATATGCTTAGATAACGACCGTCCGATTGGCTCGATCTCCGTAAC 372
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 239 CCCTTGGCTCAGAGCTATATGCTTAGATAACGACCGTCCGATCGGCTCGATCTCCGTAAC 298
Query 373 GCCAGTCGATGAGATCAGAGGAGAGATTGGTTATGTCCTCGGAAGCAAGTATTGGGGGAA 432
|||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 299 GCCAGTTGATAAGATCAGAGGAGAGATTGGTTATGTCCTCGGAAGCAAGTACTGGGGGAA 358
Query 433 AGGGATCGCCACTGAAGCGGTGAGGCTTGTGGCGGGGGAGATATTCAAGGAGAAGCCAGA 492
|||||| || || || ||||||||||||||||| | |||||||||||||||||| || ||
Sbjct 359 AGGGATAGCGACGGAGGCGGTGAGGCTTGTGGCTGCGGAGATATTCAAGGAGAACCCGGA 418
Query 493 GATGCAGAGGCTTGAGGCACTTGTTGACGTTGACAATGTTGGATCTCAAAAGGTTCTTGA 552
|||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 419 GATGGAGAGGCTTGAGGCACTTGTTGACGTTGACAACGTCGGATCTCAAAAGGTTCTTGA 478
Query 553 AAAAGTTGGGTTTGTGAAAGAAGGTGTGATGAGGAAATTTATGTATCTTAAAGGAAATGT 612
||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||
Sbjct 479 AAAAGTTGGGTTTGTGAGAGAAGGTGTTATGAGGAAATTTATGTATCTAAAAGGAAATGT 538
Query 613 TAGAGATATGGTCATGTTTAGTTTCTTGCCTTCTGATTCGTTGCACTGATCTGATTTGAA 672
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 539 TAGAGATATGGTCATGTTTAGTTTCTTGCCTTCTGATTCGTTGCACTGATCTAATTTGAA 598
Query 673 TTAACAAAT 681
| |||||||
Sbjct 599 TCAACAAAT 607
> Ahg933764 jgi|Araly1|933764|scaffold_401752.1
Length=594
Score = 409 bits (221), Expect = 2e-113
Identities = 425/520 (82%), Gaps = 28/520 (5%)
Strand=Plus/Plus
Query 144 TGAGTTCCTCACCTCC-GG-AGAAAATCCATCTCCGGCCAATGACTCTTTCCGACGTCGA 201
|||| || || ||||| || |||| || || |||||||||||||||||||||||||||||
Sbjct 57 TGAGCTCTTCGCCTCCGGGAAGAATAT-CA-CTCCGGCCAATGACTCTTTCCGACGTCGA 114
Query 202 CGATTTCATGGTTTGGGCCACTGACTC-AAACGTCACACGCTTTTGCACGTGGGAGCCTT 260
||||||||||||||||||||| ||| | ||| || ||||||||||||| ||||||||||
Sbjct 115 CGATTTCATGGTTTGGGCCACAGACCCTAAA-GTGGCACGCTTTTGCACTTGGGAGCCTT 173
Query 261 ACACTAGCCGAGAAGCCGCGATCGCGTACTTAAACGA-CGCTCTTTTGCCACACCCTTGG 319
||| ||||| || | || ||| ||| ||| ||| || | | ||| |||||||||||
Sbjct 174 GCACGAGCCGGGACGAAGCAATCAAATACATAACCGATCG-TGTCTTGACACACCCTTGG 232
Query 320 CTTAGAGCTATATGCTTAGATA-ACGACCGTCCGATTGGCT-CGATCTCCG-TAACGCCA 376
|| |||| || |||||||| | ||||||||||||| |||| | |||| | | | | |
Sbjct 233 CTCCGAGCCATCTGCTTAGA-AGACGACCGTCCGATCGGCTAC-ATCTT-GATCATGGCG 289
Query 377 GTCGATGAGATCAGAGGAGAGATTGGTTATGTCCTCG-GAAGCAAGTATTGGGGGAAAGG 435
|| ||| | |||||| |||||||||||||||||| | || | ||||||||||| |||||
Sbjct 290 GTTGATAACATCAGAAAAGAGATTGGTTATGTCCTAGCGA-GAAAGTATTGGGGAAAAGG 348
Query 436 GATCGCCACTGAAGCGGTGAGGCTTGTGGCGGGGGAGATATTCAAGGAGAAG-CCAGAGA 494
| | || || |||||||||||||| ||| ||| |||| |||||||||| | || ||||
Sbjct 349 GTTTGCAACGGAAGCGGTGAGGCTGGTGACGGCGGAGGTATTCAAGGA-ATTTCCGGAGA 407
Query 495 T-GCAGAGGCTTGAGGCACTTGTTGACGTTGACAATGTTGGATCTCAAAAGGTTCTTGAA 553
| | |||| ||||||||||||||||| || |||||||| |||||||||| ||||||||||
Sbjct 408 TTG-AGAGACTTGAGGCACTTGTTGATGTGGACAATGTCGGATCTCAAAGGGTTCTTGAA 466
Query 554 AAAGTTGGGTTTG-TGAAAGAAGGTGTGATGAGGAAATTT--ATGTATCTTAAAGGAAAT 610
|||||||||||| | | |||||||||||||||||| ||| ||||||| || |||| |
Sbjct 467 AAAGTTGGGTTTACT-AGAGAAGGTGTGATGAGGAAGTTTCTATGTATC--AAGGGAAGT 523
Query 611 GTTAGAGATA-TGGTCATGTTTAGTTTCTTGCCTTCTGAT 649
|| ||||| | || | |||||||||||||||||| |||||
Sbjct 524 GTAAGAGACACTGTT-ATGTTTAGTTTCTTGCCTACTGAT 562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32137619031
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5