BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32040.1
Length=1937
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482133 jgi|Araly1|482133|fgenesh2_kg.4__1193__AT2G32040.1 2630 0.0
> Ahg482133 jgi|Araly1|482133|fgenesh2_kg.4__1193__AT2G32040.1
Length=1771
Score = 2630 bits (1424), Expect = 0.0
Identities = 1606/1695 (95%), Gaps = 8/1695 (0%)
Strand=Plus/Plus
Query 11 ATGGCGAGTCGCTCTCTTTTCTCTATCTCAATCTCACCTTCTCAATTTACAGTTTTGCCA 70
|||||||||| | ||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1 ATGGCGAGTCTCAATCTTTTCTCTATCTCAATCTCACCTTCTCAAATTACACTTTTGCCA 60
Query 71 TCCATCAACAACGAGAGACGACGCCTTGCTATCGCCGCTCGATCTCACCGACTATCACGC 130
||||||||||||| || ||||||||||||||||||||| ||||||||| | || |||||
Sbjct 61 TCCATCAACAACGGGACACGACGCCTTGCTATCGCCGCCCGATCTCACAGTGTACCACGC 120
Query 131 CGGAAGATTCGTAAGAGACCTCCTGATAGAGATATGTCCTCCATAGTTTCAATCCCGGAG 190
||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 121 CGGAAGATTCGTAAGAGGCCTCCGGACAGAGATATGTCCTCCATAGTTTCAATCCCGGAG 180
Query 191 CTTCCTCGCCGGCGGGATTCTGAGGAAAGCCTGCTTTTAGATTCTCGAATCAGTGTAGCT 250
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 CTTCCTCGCCGGCGCGATTCTGAGGAAAGCCTGCTTCTAGATTCTCGAATCAGTGTAGCT 240
Query 251 GAAGGAGATACATCGAATACAGATGTAGAAGGAGACAGAGATACTACTTCTAGTATTAGA 310
||||||||||||||||||||| ||||||||| |||||||| | ||||||||||||||||
Sbjct 241 GAAGGAGATACATCGAATACAAATGTAGAAGAAGACAGAG--A-TACTTCTAGTATTAGA 297
Query 311 ACACAGCCTCCCCCTCGTAAAGGAAGAAATCTTAGTAGCAGCAGAATCAAATTCTACGGT 370
||||||||| |||||||||| |||||||||||||| || ||||| |||||||||||||
Sbjct 298 ACACAGCCT---CCTCGTAAAGAAAGAAATCTTAGTATCACCAGAAGCAAATTCTACGGT 354
Query 371 GTTGAATTATCACCAGATAATGTTGCTGTAGCAATGGTGTATTTTGTTCAAGGTGTTTTA 430
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GTTGAATTATCACCGGACAATGTTGCTGTAGCAATGGTGTATTTTGTTCAAGGTGTTTTA 414
Query 431 GGACTCGCTAGGCTCGCTGTTAGTTTCTATTTAAAAGATGACTTGCATCTTGATCCTGCT 490
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 415 GGACTCGCGAGGCTCGCTGTTAGTTTCTATTTAAAAGATGATTTGCATCTTGATCCTGCT 474
Query 491 GAGACAGCTGTGATAACGGGTCTTTCTTCATTGCCGTGGCTTGTTAAGCCTCTCTATGGT 550
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 475 GAGACAGCTGTGATTACGGGTCTTTCTTCGTTGCCGTGGCTTGTTAAGCCTCTCTATGGT 534
Query 551 TTTATCAGTGATTCAGTGCCTCTATTTGGTTATCGAAGGAGGTCATATCTAGTTCTCTCG 610
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 535 TTTATCAGTGATTCAGTGCCTCTATTTGGCTATCGAAGGAGGTCATATCTAGTTCTCTCG 594
Query 611 GGACTTCTTGGTGCATTTTCTTGGAGTTTGATGGCTGGTTTTGTTGACAGTAAATATAGT 670
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 595 GGACTTCTTGGTGCATTTTCGTGGAGTTTGATGGCTGCTTTTGTTGACAGTAAATATAGT 654
Query 671 GCTGCTTTTTGTATACTTCTCGGTTCCCTCTCTGTCGCCTTTTCTGATGTTGTAGTAGAC 730
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 655 GCTGCTTTTTGTATACTTCTCGGTTCCCTCTCTGTTGCCTTTTCTGATGTTGTAGTAGAC 714
Query 731 TCAATGGTAGTGGAACGGGCTCGTGGTGAGTCACAAAGCGTGTCAGGATCGCTGCAGTCT 790
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 715 TCAATGGTAGTGGAACGGGCTCGTGGTGAGTCACAAAGCGTGTCGGGATCGCTGCAGTCT 774
Query 791 TTGTGCTGGGGATCCTCAGCTTTTGGTGGAATTGTGAGTTCCTACTTTAGCGGCTCCCTG 850
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 775 TTGTGCTGGGGATCCTCAGCTTTTGGTGGAATTGTGAGTTCCTACTTCAGCGGCTCCCTG 834
Query 851 GTGGAGTCATATGGTGTGAGGTTTGTATTTGGGGTGACAGCTTTACTACCCTTGATAACT 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GTGGAGTCATATGGTGTGAGGTTTGTATTTGGGGTGACAGCTTTACTACCCTTGATAACT 894
Query 911 TCAGCAGTTGCTGTTCTCGTGAATGAACAACGTGTGGTCAGACCAGCATCAGGGCAGAAA 970
||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||
Sbjct 895 TCAGCAGTTGCTGTTCTCGTGAACGAACAACGTGTGGTCAAACCAGCATTAGGGCAGAAA 954
Query 971 GAGAATATAACGCT-GCTCAGTCCTGGTTTTCTTCAGACCTCAAAGCAGAACATGATTCA 1029
||||| ||||| || | |||||||||| |||||||||||||| | |||||||||||||||
Sbjct 955 GAGAACATAAC-CTTGGTCAGTCCTGGCTTTCTTCAGACCTCGAGGCAGAACATGATTCA 1013
Query 1030 GCTATGGGGTGCCATTAAGCAACCGAATGTTTTTCTCCCCACCTTATTTATATTCTTATG 1089
||| ||| |||||||||||||||| |||||||||||||| || |||||||| ||||||||
Sbjct 1014 GCTTTGGAGTGCCATTAAGCAACCAAATGTTTTTCTCCCGACGTTATTTATCTTCTTATG 1073
Query 1090 GCAAGCCACACCACACTCAGATTCTGCAATGTTTTACTTCACAACGAACAAACTCGGTTT 1149
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1074 GCAAGCCACACCACACTCGGATTCTGCAATGTTTTACTTCACTACGAACAAACTCGGCTT 1133
Query 1150 TACCCCGGAGTTTCTGGGACGAGTTAAACTTGTGACCTCAATTGCCTCATTGCTTGGAGT 1209
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TACTCCGGAGTTTCTAGGACGAGTTAAACTTGTGACCTCAATTGCCTCATTGCTTGGAGT 1193
Query 1210 AGGACTGTACAATGGATTCCTGAAGACTGTTCCATTGAGAAAAATCTTTCTCGTGACGAC 1269
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1194 AGGACTGTACAATGGATTCCTGAAGACTGTTCCTTTGAGAAAAATCTTTCTCGTGACGAC 1253
Query 1270 AATTTTTGGCACGGGTCTTGGGATGACTCAGGTTATCCTCGTGTCAGGTTTTAACAGACA 1329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 AATTTTTGGCACGGGTCTTGGGATGACTCAGGTTATCCTCGTGTCAGGTTTTAACAGACA 1313
Query 1330 GTTGGGGATTAGCGACGAATGGTTTGCTATAGGAGACTCTCTAATCCTAACAGTCCTTGC 1389
|||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1314 GTTGGGAATTAGCGACGAGTGGTTTGCTATCGGAGACTCTCTAATCCTAACAGTCCTTGC 1373
Query 1390 TCAGGCTTCATTCATGCCGGTTCTTGTGTTAGCAGCGAGATTATGTCCAGAAGGAATGGA 1449
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1374 TCAGGCTTCATTCATGCCGGTTCTTGTGTTAGCAGCAAGATTATGTCCAGAAGGGATGGA 1433
Query 1450 AGCAACTCTGTTCGCTACACTCATGTCAATCTCTAACGGAGGCAGTGTTCTAGGTGGGCT 1509
||||||||| || ||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1434 AGCAACTCTCTTTGCTACACTCATGTCAATTTCTAATGGAGGCAGTGTTCTAGGTGGGCT 1493
Query 1510 TATGGGTGCAGGACTGACTCAAGCATTCGGCATTACAAGAGACAGTTTTGGTAACTTATC 1569
|||||||||||| |||||||||| |||||||| |||| |||||||||||||||| ||||
Sbjct 1494 TATGGGTGCAGGGCTGACTCAAGTTTTCGGCATCACAAAAGACAGTTTTGGTAACCTATC 1553
Query 1570 AACACTTATTATCCTCTGCAATCTTAGCTCATTGCTCCCTCTGCCTCTTCTCGGTCTTTT 1629
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 TACGCTTATTATCCTATGCAATCTTAGCTCATTGCTCCCTCTGCCTCTTCTCGGTCTTTT 1613
Query 1630 ACCGCGAGATTCTCCAGATACTCTTACTAAAGATGACGCAGACGTTGAGATGAAGTCCAA 1689
||| | |||||||||||||||||| |||||||||| |||||||| ||||||||||||||
Sbjct 1614 ACCACAAGATTCTCCAGATACTCTGGCTAAAGATGATGCAGACGTGGAGATGAAGTCCAA 1673
Query 1690 TTAAGGAAGATGATG 1704
||| |||| ||||||
Sbjct 1674 TTAGGGAACATGATG 1688
Score = 84.2 bits (45), Expect = 3e-15
Identities = 49/51 (96%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 1745 GTTCTGTGTATTCAGTTCCAACCCTGTTATTACTTGAAAAGAATGAAGCAG 1795
||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1689 GTTCTGTGTATTCAGTTCCAACCCTGTTACTACTTGAGAAGAATGAAGCAG 1739
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72790458195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5