BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32050.1
Length=765
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933767 jgi|Araly1|933767|scaffold_401755.1 1092 0.0
> Ahg933767 jgi|Araly1|933767|scaffold_401755.1
Length=809
Score = 1092 bits (591), Expect = 0.0
Identities = 708/762 (93%), Gaps = 18/762 (2%)
Strand=Plus/Plus
Query 1 ATGGGTGAAAGAAAAGGCTTGAACAAATACTATCCACCAAACTTTGATCCGAAGCAGATT 60
|||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||
Sbjct 21 ATGGGTGAAAGAAAAGGCTTGAGCAAATACTATCCACCAAACTTTGATCCGAGGAAGATT 80
Query 61 CCTCGGATCCGAAAACCTAAGAATCAGCAAAGGAAGATTCGTTCGATGGTTCCATTACGT 120
|| |||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||
Sbjct 81 CCCCGGATCCGAAAACCTAAGAATCAGCAAAAGAAGTTTCGTTCGATGGTTCCGTTACGT 140
Query 121 ATTCGATGCAACACCTGTGGGAATTACATGTCGGAAGGTACCAAAATCAATTGCCGTGAA 180
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 141 ATTCGATGCAACACATGTGGGAATTACATGTCGGAAGGTACCAAAATTAATTGCCGTGAA 200
Query 181 GAAAACGTAATCGGAGAAACCTACTTAGGGATCAAAATCCATAGGTTTTACTTCAAGTGC 240
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 201 GAAAAAGTAATCGGAGAAACCTACATAGGGATCAAAATCCATAGGTTTTACTTCAAGTGT 260
Query 241 AGTAAGTGTTGCACCGAGCTGATATTGAAGACTGATCCAAAGAATTCGAGTTATGTAGCC 300
|||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 261 AGTAAGTGTTGCGCCGAGCTGATATTGAAGACCGATTCAAAGAATTCGAGTTATGTAGCC 320
Query 301 GAATCAGGTGCAACTTGTGTTTATGATCAACACGAGGAGGAG--GA-GCAAGCCGAGGAC 357
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 321 GAATCAGGTGCAACTTGTGTTTATGATCAACACGAGGAGGAGAAGAAGCAAGCCGAGGA- 379
Query 358 G-GTGGGGATAG-GATGAGTTCTTTAGAGAAGAGAACTTTGGTTTCGAAAAGAGAGGTTG 415
| | |||||| | ||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 380 GAGAGGGGAT-GTGATGAGTTCTTTAGAGAAGAGAACTTTGGTTTCCAAAAGAGAGATTG 438
Query 416 ATGTAATGGCTGCACTTGATGAGATGAAATCTATGAAATCTAGACGCGTATCGGTGAGTG 475
|||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 439 ATGTTATGGCTGCACTTGATGAGATGAAATCTATGAAATTTAGACGCGTGTCGGTGAGTG 498
Query 476 TAGACTCTATGCTTGAGGATTTGAGTAAAAGACACAAAGAAGAAGAAGAAGTTGCAAAGG 535
|||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||| |
Sbjct 499 TAGACTCTATGCTTGAGGCTTTGAGTAGAAGACATAAAGAAGAAGAAGAAGTTGCAAAAG 558
Query 536 AGGAAGATGCAGCGTTGATAAAGTCTACCAAATTTGGTAAGCAGAGGAGGATTGTCGACG 595
||||||||||||||||| ||||||| | || |||||||||||||||||||||||| ||||
Sbjct 559 AGGAAGATGCAGCGTTGGTAAAGTCCATCAGATTTGGTAAGCAGAGGAGGATTGTGGACG 618
Query 596 AAGAAACTGATGAGATGGAGAAGACGAAGAAAGTAAGAATGGAGGCAGTAGATGAGAAGA 655
||||||| |||||||| | |||| ||| | ||||||||||| | |||||| |||||
Sbjct 619 AAGAAACCGATGAGAT--A-AAGA--AAG---G-AAGAATGGAGGTAATAGATGCGAAGA 669
Query 656 AACCTAAGACTAAGAAACTTGCTTGCATTATAACCTTGAAGAAGAAGA-A-GACAACAAG 713
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 670 AACCTAAGACTAAGAAACTTGCTTGCATTATAACCTTGAAGAAGAAGAGAAGACAACAAG 729
Query 714 TTTGGGACTCGCATCACTATGCCACAACTATGGTGCTGATGA 755
|||||||||||||||||||||| |||| ||||||||||||||
Sbjct 730 TTTGGGACTCGCATCACTATGCGACAATTATGGTGCTGATGA 771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28210958580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5