BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32060.1
Length=761
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320951 jgi|Araly1|320951|fgenesh1_pm.C_scaffold_4001008 571 2e-162
Ahg906969 jgi|Araly1|906969|Al_scaffold_0002_50 569 8e-162
> Ahg320951 jgi|Araly1|320951|fgenesh1_pm.C_scaffold_4001008
Length=363
Score = 571 bits (309), Expect = 2e-162
Identities = 345/363 (95%), Gaps = 0/363 (0%)
Strand=Plus/Plus
Query 187 ATGGATGTGAGTACTGCATTGGAGTTGACTGTAAGGAAATCTCGTGCTTATGGTGGTGTT 246
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGATGTGAGTACTGCATTGGAGTTGACAGTAAGGAAATCTCGTGCTTATGGTGGTGTT 60
Query 247 GTTCGTGGTCTCCATGAAAGCGCTAAGCTTATTGAGAAGCGTAATGCTCAGCTCTGTGTC 306
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 61 GTTCGTGGTCTCCATGAAAGCGCTAAGCTTATCGAGAAGCGTGTTGCTCAGCTCTGTGTC 120
Query 307 CTGGCTGAAGATTGCAACCAACCTGATTATGTCAAGCTTGTTAAAGCTCTTTGCGCTGAC 366
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 121 TTGGCTGAAGATTGCAACCAACCTGATTATGTCAAGCTGGTTAAAGCTCTTTGTGCTGAC 180
Query 367 CACAGCATCAAATTGCTTACTGTTCCAAGTGCCAAAACACTCGGCGAATGGGCTGGTCTT 426
||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 181 CACAGCATCAAGTTGCTTACGGTTCCAAGTGCCAAAACCCTCGGCGAATGGGCTGGTCTT 240
Query 427 TGCAAGATTGATTCTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATC 486
|||||||||||||| ||||| ||||| |||||||||||||||||||||||||| || |||
Sbjct 241 TGCAAGATTGATTCAGAGGGAAATGCGAGGAAGGTTGTTGGATGCTCATGTCTTGTAATC 300
Query 487 AAGGATTTCGGTGAGGAGACAACTGCACTAAACATTGTCAAGAAGCATCTTGATTCTAAC 546
||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 301 AAGGATTACGGTGAGGAGACAACTGCTCTAAACATTGTCAAGAAGCATCTTGAGTCTAAC 360
Query 547 TAA 549
|||
Sbjct 361 TAA 363
> Ahg906969 jgi|Araly1|906969|Al_scaffold_0002_50
Length=423
Score = 569 bits (308), Expect = 8e-162
Identities = 376/409 (92%), Gaps = 4/409 (1%)
Strand=Plus/Plus
Query 143 CTGTGGTTCCTCCTGTTGCTGAGGCAGCAGTGATCCCAGAGGACATGGATGTGAGT-ACT 201
|||| |||||||| |||||||||||||||||||||||||||||||||||| | | | |||
Sbjct 17 CTGTTGTTCCTCCGGTTGCTGAGGCAGCAGTGATCCCAGAGGACATGGAT-TTAATGACT 75
Query 202 GCATTGGAGTTGACTGTAAGGAAATCTCGTGCTTATGGTGGTGTTGTTCGTGGTCTCCAT 261
||| ||||||||| | ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 76 GCAGCGGAGTTGACAATTAGGAAATCTTGTGCTTATGGTGGTGTTGTTCGTGGTCTCCAT 135
Query 262 GAAAGCGCTAAGCTTATTGAGAAGCGTAATGCTCAGCTCTGTGTCCTGGCTGAAGATTGC 321
|||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 136 GAAAGCACTAAGCTTATTGAGAAGCGTGTTGCTCAGCTCTGTGTCTTGGCTGAAGATTGC 195
Query 322 AACCAACCTGATTATGTCAAGCTTGTTAAAGCTCTTTGCGCTGACCACAGCATCAAATTG 381
||||||||||||||||||||||| |||| |||||||||| ||||||||| |||||| |||
Sbjct 196 AACCAACCTGATTATGTCAAGCTGGTTACAGCTCTTTGCACTGACCACAACATCAATTTG 255
Query 382 CTTACTGTTCCAAGTGCCAAAACACTCGGCGAATGGGCTGGTCTTTGCAAGATTGATTCT 441
||||| ||||| ||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 256 CTTACGGTTCCCAGTGCCAAAACCCTCGGCGAATGGGCTGGTCTTTGCAAGCTTGATTCA 315
Query 442 GAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGT-GATCAAGGATTTCGGTGA 500
||||||||||| |||||||||||||||||||||||||| || | ||||||||| ||||||
Sbjct 316 GAGGGCAATGCGAGGAAGGTTGTTGGATGCTCATGTCTTGTAG-TCAAGGATTACGGTGA 374
Query 501 GGAGACAACTGCACTAAACATTGTCAAGAAGCATCTTGATTCTAACTAA 549
|||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 375 GGAGACGACTGCACTAAACATTGTCAAGAAGCATCTTGAATCTAACTAA 423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28058466912
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5