BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32070.1
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933769 jgi|Araly1|933769|scaffold_401757.1 1339 0.0
Ahg951673 jgi|Araly1|951673|scaffold_10300006.1 1234 0.0
> Ahg933769 jgi|Araly1|933769|scaffold_401757.1
Length=877
Score = 1339 bits (725), Expect = 0.0
Identities = 814/858 (95%), Gaps = 2/858 (0%)
Strand=Plus/Plus
Query 141 TCATCATCATCGTTATCATCACCATGTCACTGTTTCTAAAAGACGATTCGATTCAAATCC 200
||||||||||| |||||||| |||||| || ||||||||||||||||||||||||||||
Sbjct 7 TCATCATCATCATTATCATCGTCATGTCGCTATTTCTAAAAGACGATTCGATTCAAATCC 66
Query 201 GTGAAGTATGGAACGACAATCTCGAATCAGAGATGGCTCTGATTCGAGAAGTCGTAGACG 260
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 67 GTGAAGTATGGAACGAAAATCTCGAATCAGAAATGGCTCTGATTCGAGAAGTCGTCGACG 126
Query 261 ATTTCCCATTCGTAGCGATGGACACAGAGTTCCCAGGAATCGTGTGTAGACCAGTGGGAA 320
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 127 ATTTCCCATTCGTAGCGATGGACACAGAGTTCCCCGGAATCGTGTGTAGACCAGTGGGAA 186
Query 321 CATTCAAAACCAACACAGAGTACCACTACGAAACTCTCAAAACAAACGTCAACATACTCA 380
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 187 CATTCAAAACCAACACAGAGTACCACTATGAAACCCTCAAAACAAACGTCAACATACTCA 246
Query 381 AGATGATTCAGCTTGGACTCACTTTCTCTGATGAGAAAGGTAACCTCCCAACTTGTGGAA 440
||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 247 AGATGATTCAGCTCGGACTCACTTTCTCTGATGAGAAAGGAAACCTCCCAACGTGTGGAA 306
Query 441 CAGACAACAAGTATTGCATCTGGCAGTTCAATTTCCGCGAATTCGACCTCGAATCCGATA 500
|||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 307 CAGACAACAAATACTGCATCTGGCAGTTCAATTTCCGTGAATTCGACCTCGAATCCGACA 366
Query 501 TCTACGCTACCGATTCGATCGAGCTTCTTCGTCAATCAGGCATCGATTTCG-TGAAAAAC 559
| |||||||| ||||| |||||||||||||||||||||||||||||||||| | ||||||
Sbjct 367 TTTACGCTACTGATTCCATCGAGCTTCTTCGTCAATCAGGCATCGATTTCGCT-AAAAAC 425
Query 560 AACGAATTCGGTATCGATTCGAAGCGGTTCGCTGAGCTTTTGATGTCTTCAGGGATTGTG 619
||| ||||||||||||||||||| || ||||| |||||||||||||| |||||||||||
Sbjct 426 AACCAATTCGGTATCGATTCGAAACGTTTCGCCGAGCTTTTGATGTCATCAGGGATTGTT 485
Query 620 TTGAATGAAAACGTTCATTGGGTTACATTCCACAGCGGATACGATTTCGGTTACTTGTTG 679
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 486 TTGAATGAAAACGTTCATTGGGTTACATTCCACAGCGGATATGATTTTGGTTACTTGTTG 545
Query 680 AAGCTATTGACTTGTCAGAATCTTCCCGAGACGCAAACAGGGTTCTTCGAGATGATCAGT 739
||||||||||||||||||||||| || || || ||||| ||||| |||||||||||||||
Sbjct 546 AAGCTATTGACTTGTCAGAATCTGCCGGAAACACAAACGGGGTTTTTCGAGATGATCAGT 605
Query 740 GTGTATTTCCCGAGGGTTTATGATATCAAACACTTGATGAAGTTCTGTAATAGTCTTCAT 799
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 606 GTGTATTTCCCGAGGGTTTACGATATCAAACACTTGATGAAGTTCTGTAATAGTCTTCAT 665
Query 800 GGAGGTCTGAATAAATTGGCGGAGCTGCTTGATGTTGAGAGAGTTGGGATTTGTCACCAG 859
||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 666 GGAGGTCTGAACAAATTGGCGGAGCTGCTTGAAGTTGAGAGAGTTGGGATATGTCACCAG 725
Query 860 GCCGGATCGGATAGCTTGTTAACGTCGTGTACATTCAGGAAGCTGCAGGAGAATTTCTTC 919
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 GCGGGATCGGATAGCTTGTTAACGTCGTGTACATTCAGGAAGCTGCAGGAGAATTTCTTC 785
Query 920 ATTGGTTCAATGGAGAAGTATTCTGGTGTTTTGTATGGTTTAGGTGTTGAGAATGGTCAG 979
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 786 ATTGGTTCAATGGAGAAATATTCTGGTGTTTTGTATGGATTAGGTGTTGAGAATGGTCAG 845
Query 980 ATTGTTCATTGATAAAAG 997
||||||||||||||||||
Sbjct 846 ATTGTTCATTGATAAAAG 863
> Ahg951673 jgi|Araly1|951673|scaffold_10300006.1
Length=799
Score = 1234 bits (668), Expect = 0.0
Identities = 747/786 (95%), Gaps = 2/786 (0%)
Strand=Plus/Plus
Query 213 ACGACAATCTCGAATCAGAGATGGCTCTGATTCGAGAAGTCGTAGACGATTTCCCATTCG 272
|||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 ACGAAAATCTCGAATCAGAAATGGCTCTGATTCGAGAAGTCGTCGACGATTTCCCATTCG 60
Query 273 TAGCGATGGACACAGAGTTCCCAGGAATCGTGTGTAGACCAGTGGGAACATTCAAAACCA 332
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 TAGCGATGGACACAGAGTTCCCCGGAATCGTGTGTAGACCAGTGGGAACATTCAAAACCA 120
Query 333 ACACAGAGTACCACTACGAAACTCTCAAAACAAACGTCAACATACTCAAGATGATTCAGC 392
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 ACACAGAGTACCACTATGAAACCCTCAAAACAAACGTCAACATACTCAAGATGATTCAGC 180
Query 393 TTGGACTCACTTTCTCTGATGAGAAAGGTAACCTCCCAACTTGTGGAACAGACAACAAGT 452
| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
Sbjct 181 TCGGACTCACTTTCTCTGATGAGAAAGGAAACCTCCCAACGTGTGGAACAGACAACAAAT 240
Query 453 ATTGCATCTGGCAGTTCAATTTCCGCGAATTCGACCTCGAATCCGATATCTACGCTACCG 512
| ||||||||||||||||||||||| |||||||||||||||||||| || || |||||||
Sbjct 241 ACTGCATCTGGCAGTTCAATTTCCGTGAATTCGACCTCGAATCCGACATTTATGCTACCG 300
Query 513 ATTCGATCGAGCTTCTTCGTCAATCAGGCATCGATTTCG-TGAAAAACAACGAATTCGGT 571
|||| |||||||||||||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct 301 ATTCCATCGAGCTTCTTCGTCAATCAGGCATCGATTTCGCT-AAAAACAACCAATTCGGT 359
Query 572 ATCGATTCGAAGCGGTTCGCTGAGCTTTTGATGTCTTCAGGGATTGTGTTGAATGAAAAC 631
||||||||||| || ||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct 360 ATCGATTCGAAACGTTTCGCCGAGCTTTTGATGTCATCAGGGATTGTTTTGAATGAAAAC 419
Query 632 GTTCATTGGGTTACATTCCACAGCGGATACGATTTCGGTTACTTGTTGAAGCTATTGACT 691
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 420 GTTCATTGGGTTACATTCCACAGCGGATATGATTTTGGTTACTTGTTGAAGCTATTGACT 479
Query 692 TGTCAGAATCTTCCCGAGACGCAAACAGGGTTCTTCGAGATGATCAGTGTGTATTTCCCG 751
||||||||||| || || || ||||| ||||| |||||||||||||||||||||||||||
Sbjct 480 TGTCAGAATCTGCCGGAAACACAAACGGGGTTTTTCGAGATGATCAGTGTGTATTTCCCG 539
Query 752 AGGGTTTATGATATCAAACACTTGATGAAGTTCTGTAATAGTCTTCATGGAGGTCTGAAT 811
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGGGTTTACGATATCAAACACTTGATGAAGTTCTGTAATAGTCTTCATGGAGGTCTGAAC 599
Query 812 AAATTGGCGGAGCTGCTTGATGTTGAGAGAGTTGGGATTTGTCACCAGGCCGGATCGGAT 871
|||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 600 AAATTGGCGGAGCTGCTTGAAGTTGAGAGAGTTGGGATATGTCACCAGGCGGGATCGGAT 659
Query 872 AGCTTGTTAACGTCGTGTACATTCAGGAAGCTGCAGGAGAATTTCTTCATTGGTTCAATG 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGCTTGTTAACGTCGTGTACATTCAGGAAGCTGCAGGAGAATTTCTTCATTGGTTCAATG 719
Query 932 GAGAAGTATTCTGGTGTTTTGTATGGTTTAGGTGTTGAGAATGGTCAGATTGTTCATTGA 991
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 720 GAGAAATATTCTGGTGTTTTGTATGGATTAGGTGTTGAGAATGGTCAGATTGTTCATTGA 779
Query 992 TAAAAG 997
||||||
Sbjct 780 TAAAAG 785
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42964527459
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5