BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32080.1
Length=1500
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901018 jgi|Araly1|901018|Al_scaffold_0004_1668 1367 0.0
Ahg333180 jgi|Araly1|333180|fgenesh1_pm.C_scaffold_103000004 1367 0.0
> Ahg901018 jgi|Araly1|901018|Al_scaffold_0004_1668
Length=864
Score = 1367 bits (740), Expect = 0.0
Identities = 827/865 (96%), Gaps = 21/865 (2%)
Strand=Plus/Plus
Query 155 ggaggagctgaaggcggaagagcggtaaccggaggaggaggaggaggaggagggagCGAT 214
||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 19 GGAGGAGCTGAAGGCGGAAGAGCGGCAACC---------GGAGGAGGAGGAGGGAGCGAT 69
Query 215 GTGGAATTGGTGAGCAAGACGTTGCAAGTGGAGCATAAGCTATTCTATTTTGATCTTAAG 274
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 70 GTGGAATTGGTGAGCAAGACGTTGCAAGTGGAGCATAAGCTTTTCTATTTTGATCTTAAG 129
Query 275 GAGAATCCTCGTGGAAGGTATCTAAAGATATCGGAGAAGACGTCGGCGACGAGGTCAACC 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 GAGAATCCTCGTGGAAGGTATCTAAAGATATCGGAGAAGACGTCGGCGACGAGGTCAACC 189
Query 335 ATCATTGTTCCTTCCTCCGGCATCTCTTGGTTCCTTGATCTCTTCAACTACTATGTCAAT 394
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 190 ATCATTGTTCCTTCCTCCGGCATCTCTTGGTTCCTTGATCTCTTCAATTACTATGTCAAT 249
Query 395 TCTGAGGAACACGAGCTTTTTAGCAAAGAATTGCAGCTTGATTCCAAGGTGTTTTACTTC 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 TCTGAGGAACACGAGCTTTTTAGCAAAGAATTGCAGCTTGATTCCAAGGTGTTTTACTTC 309
Query 455 GATATCGGTGAGAACAGAAGAGGACGCTTCTTGAAGGTGTCAGAAGCATCGGTTAGTAGA 514
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 GACATTGGTGAGAACAGAAGAGGACGCTTCTTGAAGGTGTCAGAAGCATCGGTTAGTAGA 369
Query 515 AATCGAAGTACCATTATTGTTCCAGCTGGAAGCTCTCCTGATGAAGGATGGGCAGCTTTC 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 AATCGAAGTACCATTATTGTTCCAGCTGGAAGCTCTCCTGATGAAGGATGGGCAGCTTTC 429
Query 575 AGGAATATATTGGCTGAGATACATGAAGCATCAGGACTTTTTGTGATGCCAAATCAGGTG 634
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 430 AGGAATATATTGGCTGAGATTCATGAAGCATCAGGACTTTTTGTGATGCCAAATAAGGTG 489
Query 635 AAACCTTCTGATGGACAGGAACACTTGGTTGATGATGTTGGAGCTGGTTTTATACCTGGA 694
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 490 AAACCTTCTGATGGACAGGAACACTTGGTTGATGATGTTGGGGCTGGATTTATACCTGGC 549
Query 695 CATGGTAGTCAGCAGCCATCTTCTTCAGAACATAATGTGGATCGAACAATTGACTCGCCA 754
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 550 CATGGTAGTCAGCAGCCATCTTCTTCAGAACATAATGTGGATCGATCAGTTGACTCGCCA 609
Query 755 GGCCAGGAAGAAACCGGAATGACTGGTGTTTCTAAAGTAATCAGAGCTGACCAGAAACGG 814
|||||||||||||| || | | | |||||||||||||||||||||||||||||
Sbjct 610 GGCCAGGAAGAAAC-----TG--T--T-T--CTAAAGTAATCAGAGCTGACCAGAAACGG 657
Query 815 TTCTTCTTTGATCTTGGGAACAATAACAGGGGCCATTTCTTAAGGATATCTGAGGTGGCA 874
||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||
Sbjct 658 TTCTTCTTTGATCTTGGGAACAATAACAGGGGCCATTTCCTGAGGATATCTGAGGTAGCA 717
Query 875 GGTTCTGACAGGTCTTCCATCATTCTACCGTTATCGGGTCTTAAGCAGTTTCACGAAGTA 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GGTTCTGACAGGTCTTCCATCATTCTACCGTTATCGGGTCTTAAGCAGTTTCACGAAGTA 777
Query 935 ATTGGTCACTTTGTGGAGATCACCAAAGATAAAATTGAAGGTATGACAGGTGCAAATGTC 994
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 778 ATTGGTCACTTTGTGGAGATCACCAAAGATAAGATTGAAGGTATGACGGGTGCAAATGTC 837
Query 995 AGGACAGTTGATCCTCCTCAGAGAT 1019
|||||||||||||||||||||||||
Sbjct 838 AGGACAGTTGATCCTCCTCAGAGAT 862
> Ahg333180 jgi|Araly1|333180|fgenesh1_pm.C_scaffold_103000004
Length=864
Score = 1367 bits (740), Expect = 0.0
Identities = 827/865 (96%), Gaps = 21/865 (2%)
Strand=Plus/Plus
Query 155 ggaggagctgaaggcggaagagcggtaaccggaggaggaggaggaggaggagggagCGAT 214
||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 19 GGAGGAGCTGAAGGCGGAAGAGCGGCAACC---------GGAGGAGGAGGAGGGAGCGAT 69
Query 215 GTGGAATTGGTGAGCAAGACGTTGCAAGTGGAGCATAAGCTATTCTATTTTGATCTTAAG 274
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 70 GTGGAATTGGTGAGCAAGACGTTGCAAGTGGAGCATAAGCTTTTCTATTTTGATCTTAAG 129
Query 275 GAGAATCCTCGTGGAAGGTATCTAAAGATATCGGAGAAGACGTCGGCGACGAGGTCAACC 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 GAGAATCCTCGTGGAAGGTATCTAAAGATATCGGAGAAGACGTCGGCGACGAGGTCAACC 189
Query 335 ATCATTGTTCCTTCCTCCGGCATCTCTTGGTTCCTTGATCTCTTCAACTACTATGTCAAT 394
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 190 ATCATTGTTCCTTCCTCCGGCATCTCTTGGTTCCTTGATCTCTTCAATTACTATGTCAAT 249
Query 395 TCTGAGGAACACGAGCTTTTTAGCAAAGAATTGCAGCTTGATTCCAAGGTGTTTTACTTC 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 TCTGAGGAACACGAGCTTTTTAGCAAAGAATTGCAGCTTGATTCCAAGGTGTTTTACTTC 309
Query 455 GATATCGGTGAGAACAGAAGAGGACGCTTCTTGAAGGTGTCAGAAGCATCGGTTAGTAGA 514
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 GACATTGGTGAGAACAGAAGAGGACGCTTCTTGAAGGTGTCAGAAGCATCGGTTAGTAGA 369
Query 515 AATCGAAGTACCATTATTGTTCCAGCTGGAAGCTCTCCTGATGAAGGATGGGCAGCTTTC 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 AATCGAAGTACCATTATTGTTCCAGCTGGAAGCTCTCCTGATGAAGGATGGGCAGCTTTC 429
Query 575 AGGAATATATTGGCTGAGATACATGAAGCATCAGGACTTTTTGTGATGCCAAATCAGGTG 634
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 430 AGGAATATATTGGCTGAGATTCATGAAGCATCAGGACTTTTTGTGATGCCAAATAAGGTG 489
Query 635 AAACCTTCTGATGGACAGGAACACTTGGTTGATGATGTTGGAGCTGGTTTTATACCTGGA 694
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 490 AAACCTTCTGATGGACAGGAACACTTGGTTGATGATGTTGGGGCTGGATTTATACCTGGC 549
Query 695 CATGGTAGTCAGCAGCCATCTTCTTCAGAACATAATGTGGATCGAACAATTGACTCGCCA 754
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 550 CATGGTAGTCAGCAGCCATCTTCTTCAGAACATAATGTGGATCGATCAGTTGACTCGCCA 609
Query 755 GGCCAGGAAGAAACCGGAATGACTGGTGTTTCTAAAGTAATCAGAGCTGACCAGAAACGG 814
|||||||||||||| || | | | |||||||||||||||||||||||||||||
Sbjct 610 GGCCAGGAAGAAAC-----TG--T--T-T--CTAAAGTAATCAGAGCTGACCAGAAACGG 657
Query 815 TTCTTCTTTGATCTTGGGAACAATAACAGGGGCCATTTCTTAAGGATATCTGAGGTGGCA 874
||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||
Sbjct 658 TTCTTCTTTGATCTTGGGAACAATAACAGGGGCCATTTCCTGAGGATATCTGAGGTAGCA 717
Query 875 GGTTCTGACAGGTCTTCCATCATTCTACCGTTATCGGGTCTTAAGCAGTTTCACGAAGTA 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GGTTCTGACAGGTCTTCCATCATTCTACCGTTATCGGGTCTTAAGCAGTTTCACGAAGTA 777
Query 935 ATTGGTCACTTTGTGGAGATCACCAAAGATAAAATTGAAGGTATGACAGGTGCAAATGTC 994
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 778 ATTGGTCACTTTGTGGAGATCACCAAAGATAAGATTGAAGGTATGACGGGTGCAAATGTC 837
Query 995 AGGACAGTTGATCCTCCTCAGAGAT 1019
|||||||||||||||||||||||||
Sbjct 838 AGGACAGTTGATCCTCCTCAGAGAT 862
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56145021130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5