BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32090.1
Length=704
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482141 jgi|Araly1|482141|fgenesh2_kg.4__1201__AT2G32090.1 787 0.0
Ahg951671 jgi|Araly1|951671|scaffold_10300004.1 669 0.0
> Ahg482141 jgi|Araly1|482141|fgenesh2_kg.4__1201__AT2G32090.1
Length=649
Score = 787 bits (426), Expect = 0.0
Identities = 599/676 (89%), Gaps = 37/676 (5%)
Strand=Plus/Plus
Query 39 TTTTTTGTCGACCATTTTTGTTTCTGAGTTGTTC-TTC--TTGATTAGCTTTG------T 89
||||||||||||||||||| |||||||||| ||| ||| ||||| ||||||| |
Sbjct 1 TTTTTTGTCGACCATTTTTTTTTCTGAGTTCTTCTTTCTTTTGATAAGCTTTGTCCTCCT 60
Query 90 CCGCTTGGAACCAAACATGGCGAGTCTTGGCCATATAGCCAGAGAATCATCAGACATCAC 149
|| ||| ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 61 CCTCTTAGAACCAAACATGGCGAGTCTTGGCCATATAGCCAGAGAATCCTCCGACATCAA 120
Query 150 ACGCCTCGCCCAGTTTTACAAAGAGGTGTTTGGGTTCGAGGAGATCGAAAGTCCTGATTT 209
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACGCCTTGCCGAGTTTTACAAAGAGGTGTTTGGGTTCGAGGAGATCGAAAGTCCTGATTT 180
Query 210 TGGAGACCTACAGGTGGTGTGGCTAAACTTACCAGGTGCTTTTGCAATGCATATTATCCA 269
|||||||||| ||||| | |||||||||||||||||||||||||||||||| ||||||||
Sbjct 181 TGGAGACCTAAAGGTGATATGGCTAAACTTACCAGGTGCTTTTGCAATGCACATTATCCA 240
Query 270 GAGAAACCCTTCAACAAATCTTCCAGAAGGTCCTTACAGTGCTACCTCAGCGGTTAAG-G 328
||||||||||||||| || |||||||||||||||||||||||||||||||||||| | |
Sbjct 241 GAGAAACCCTTCAACCAACCTTCCAGAAGGTCCTTACAGTGCTACCTCAGCGGTT-CGTG 299
Query 329 ATCCTAGCCATCTCCCAATGGGTCATCATATCTGTTTCTCTGTCCCAAATTTCGACTCTT 388
||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||
Sbjct 300 ATCCTAGCCATCTCCCAATGGGTCACCATATCTGCTTCTCCGTCCCAAATTTCGACTCTT 359
Query 389 TCCTTCATTCTCTCAAGGAGAAAGGGATAGAAACTTTTCAGAAGTCTCTTCCTGATGGAA 448
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 360 TCCTTCATTCTCTCAAGGAAAAAAGGATAGAAACTTTTCAGAAGTCTCTTCCTGATGGAA 419
Query 449 AAGTCAAGCAAGTTTTCTTCTTTGATCCTGATGGAAACGGATTAGAGGTAGCAAGTCGAT 508
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 420 AAGTCAAGCAAGTTTTCTTCTTTGATCCAGATGGAAACGGATTAGAGGTAGCAAGTCGAT 479
Query 509 CATGAGCCTTGAACCTGAAATATGTGGTATCACTACTTATAGAATGAAATAAAAGTATTG 568
| ||||| | | ||||||||| | || | | | | | || | | || |||
Sbjct 480 CTTGAGCGT--A-CCTGAAATAAA-G--ATG--TGGT-A-A---T-AA-TCA--GT-TTG 521
Query 569 TATAAATAATCAGTTTGTTGAAATAAAATCTATATGTCTAGGTTTGATGTTAACTTGTGA 628
| | | | || | | | || |||| |||||||||||||||||||||||||||||||
Sbjct 522 T-TGGA-A--CA-T--GAT-AACTAAAGGCTATATGTCTAGGTTTGATGTTAACTTGTGA 573
Query 629 CAGCTTACGCCTCAAAGTTCGTGTCATGTGCTTTGAATGTTGGATGTATCGAATTTATGA 688
| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 TAACTTACGCTTCAAAGTTCGTGTCATGTGCTTTGAATGTTGGATGTATCGAATTTATGA 633
Query 689 GCTTTTCCTTGTCTAG 704
||||||||||||||||
Sbjct 634 GCTTTTCCTTGTCTAG 649
> Ahg951671 jgi|Araly1|951671|scaffold_10300004.1
Length=449
Score = 669 bits (362), Expect = 0.0
Identities = 417/443 (94%), Gaps = 5/443 (1%)
Strand=Plus/Plus
Query 89 TCCGCTTGGAACCAAACATGGCGAGTCTTGGCCATATAGCCAGAGAATCATCAGACATCA 148
||| ||| ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 4 TCCTCTTAGAACCAAACATGGCGAGTCTTGGCCATATAGCCAGAGAATCCTCCGACATCA 63
Query 149 CACGCCTCGCCCAGTTTTACAAAGAGGTGTTTGGGTTCGAGGAGATCGAAAGTCCTGATT 208
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 AACGCCTTGCCGAGTTTTACAAAGAGGTGTTTGGGTTCGAGGAGATCGAAAGTCCTGATT 123
Query 209 TTGGAGACCTACAGGTGGTGTGGCTAAACTTACCAGGTGCTTTTGCAATGCATATTATCC 268
||||||||||| ||||| | |||||||||||||||||||||||||||||||| |||||||
Sbjct 124 TTGGAGACCTAAAGGTGATATGGCTAAACTTACCAGGTGCTTTTGCAATGCACATTATCC 183
Query 269 AGAGAAACCCTTCAACAAATCTTCCAGAAGGTCCTTACAGTGCTACCTCAGCGGTTAAG- 327
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
Sbjct 184 AGAGAAACCCTTCAACAAACCTTCCAGAAGGTCCTGACAGTGCTACCTCAGCGGTT-CGT 242
Query 328 GATCCTAGCCATCTCCCAATGGGTCATCATATCTGTTTCTCTGTCCCAAATTTCGACTCT 387
|||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 243 GATCCTAGCCATCTCCCAATGGGTCACCATATCTGCTTCTCCGTCCCAAATTTCGACTCT 302
Query 388 TTCCTTCATTCTCTCAAGGAGAAAGGGATAGAAACTTTTCAGAAGTCTCTTCCTGATGGA 447
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 303 TTCCTTCATTCTCTCAAGGAGAAAAGGATAGAAACTTTTCAGAAGTCTCTTCCTGATGGA 362
Query 448 AAAGTCAAGCAAGTTTTCTTCTTTGATCCTGATGGAAACGGATTAGAGGTAGCAAGTCGA 507
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 363 AAAGTCAAGCAAGTTTTCTTCTTTGATCCAGATGGAAACGGATTAGAGGTAGCAAGTCGA 422
Query 508 TCATGAGCCTTGAACCTGAAATA 530
|| ||||| | | |||||||||
Sbjct 423 TCTTGAGCGT--A-CCTGAAATA 442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25885460643
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5