BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32120.1
Length=2092
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951668 jgi|Araly1|951668|scaffold_10300001.1 2610 0.0
Ahg933774 jgi|Araly1|933774|scaffold_401762.1 2137 0.0
> Ahg951668 jgi|Araly1|951668|scaffold_10300001.1
Length=1732
Score = 2610 bits (1413), Expect = 0.0
Identities = 1621/1723 (94%), Gaps = 8/1723 (0%)
Strand=Plus/Plus
Query 184 GCAGGAAATGGCAGAAGC-AGCATACACAGTAGCATCAGACAGTGAAAACACTGGAGAGG 242
|||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct 14 GCAGGAAATGGCAGAA-CAAGAATACACAGTAGCATCAGACAGTGAAAACACTGGAGAGG 72
Query 243 AGAAATCATCATCATCTCCTTCATTACCCGAAATCGCCCTTGGTATCGACATTGGTACTT 302
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 73 AGAAATCATCATCATCTCCTTCGTTACCCGAAATCGCCGTTGGTATCGACATTGGTACTT 132
Query 303 CTCAATGCAGTATAGCTGTTTGGAACGGTTCTCAAGTTCACATCTTGAGGAACACAAGAA 362
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 133 CTCAATGCAGTATAGCTGTTTGGAACGGCTCTCAAGTTCACATCTTGAGGAACACAAGAA 192
Query 363 ACCAGAAGCTCATCAAATCATTTGTCACTTTCAAAGATGAAGTTCCTGCTGGTGGTGTTA 422
||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 193 ACCAGAAACTCATCAAATCATTTGTAACTTTCAAAGACGAAGTTCCTGCTGGTGGAGTTA 252
Query 423 GCAACCAGCTCGCACATGAGCAGGAAATGCTAACCGGAGCCGCTATCTTCAACATGAAGC 482
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 253 GCAACCAGCTCGCACACGAGCAGGAAATGCTAACTGGAGCCGCTATCTTCAACATGAAGC 312
Query 483 GGCTCGTTGGTCGTGTAGACACTGATCCTGTGGTTCACGCTAGCAAGAACCTTCCTTTCT 542
||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 GGCTCATTGGCCGTGCAGACACTGATCCTGTGGTTCACGCTAGCAAGAACCTTCCTTTCT 372
Query 543 TGGTTCAAACTCTTGATATTGGAGTTAGACCGTTTATTGCAGCTTTGGTGAACAATGCTT 602
|||||||||||||||| |||||||| ||||||||||| || |||||||||||||||||||
Sbjct 373 TGGTTCAAACTCTTGACATTGGAGTCAGACCGTTTATCGCGGCTTTGGTGAACAATGCTT 432
Query 603 GGAGATCAACAACACCAGAGGAAGTTTTAGCTATATTTCTGGTGGAGTTACGTCTGATGG 662
||||||| || || || |||||||||||||| ||||| || ||||| || ||||| ||||
Sbjct 433 GGAGATCTACGACTCCTGAGGAAGTTTTAGCGATATTCCTTGTGGAATTGCGTCTAATGG 492
Query 663 CTGAAGCTCAGTTGAAACGTCCTGTGAGAAATGTAGTGCTTACGGTTCCGGTTTCGTTCT 722
||||||||||||||||||| |||||||||||||| || || ||||||||||||||||| |
Sbjct 493 CTGAAGCTCAGTTGAAACGGCCTGTGAGAAATGTGGTACTCACGGTTCCGGTTTCGTTTT 552
Query 723 CTAGGTTCCAGCTCACACGG-TTCGAAAGAGCTTGCGCTATGGCTGGACTTCATGTTCTT 781
|||||||||||||||||||| || ||| | ||||| |||||||||||||||||||| |||
Sbjct 553 CTAGGTTCCAGCTCACACGGATT-GAACGTGCTTGTGCTATGGCTGGACTTCATGTACTT 611
Query 782 CGTTTGATGCCGGAACCAACTGCTATTGCGTTGCTTTATGCGCAACAGCAGCAGATGACT 841
||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 612 CGTTTGATGCCAGAACCAACTGCAATTGCGTTACTTTATGCGCAACAGCAGCAGATGACT 671
Query 842 ACCCATGATAACATGGGAAGCGGAAGCGAGAGGCTTGCGGTTATATTCAATATGGGAGCT 901
|| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 672 ACGCACGATAACATGGGAAGCGGAAGCGAGAGGCTTGCGGTTATATTCAATATGGGTGCT 731
Query 902 GGTTACTGCGATGTTGCGGTTACTGCTACTGCTGGTGGTGTTTCACAGATAAAAGCTTTA 961
||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 732 GGTTATTGCGATGTTGCTGTTACTGCAACTGCTGGTGGTGTTTCACAGATAAAAGCTTTA 791
Query 962 GCTGGTAGCCCCATTGGGGGTGAAGACATTTTGCAGAACACAATTCGCCATATCGCTCCA 1021
||||| ||||||||||| || |||||| |||||||||||||||| |||||||| || |||
Sbjct 792 GCTGGAAGCCCCATTGGAGGAGAAGACGTTTTGCAGAACACAATGCGCCATATTGCGCCA 851
Query 1022 CCTAA-TGAAGAAGCTTCGGGGTTGCTTCGTGTAGCGGCACAGGACGCGATTCACAGGCT 1080
|| || ||||||||||||||||||||| ||||||||| |||||||||| |||||||||||
Sbjct 852 CC-AACTGAAGAAGCTTCGGGGTTGCTCCGTGTAGCGACACAGGACGCTATTCACAGGCT 910
Query 1081 AACGGATCAAGAAAATGTCCAAATTGAAGTGGATTTGGGAAATGGTAACAAGATATCCAA 1140
| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 911 ATCGGATCAAGAAAATGTCCAAATTGAAGTGGATTTGGGAAACGGTAACAAGATTTCCAA 970
Query 1141 GGTTCTTGATAGGTTAGAGTTTGAGGAAGTGAACCAGAAGGTATTTGAGGAATGTGAGAG 1200
|||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 971 GGTTCTTGATAGATTGGAGTTTGAGAAAGTGAACCAGAAGGTATTTGAGGAATGTGAGAG 1030
Query 1201 ACTTGTTGTGCAGTGCCTGCGAGATGCGAGAGTCAATGG-TGGTGATATCGATGATTTGA 1259
||||||||||||||| |||||||||||||||||| | || |||||||||||||||| |||
Sbjct 1031 ACTTGTTGTGCAGTGTCTGCGAGATGCGAGAGTCGA-GGTTGGTGATATCGATGATGTGA 1089
Query 1260 TAATGGTTGGAGGGTGTTCGTACATCCCGAAAGTAAGAACTATTATCAAGAACGTATGCA 1319
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1090 TAATGGTTGGAGGGTGTTCTTACATCCCGAAAGTAAGAACTATTATCAAGAACGTGTGCA 1149
Query 1320 AGAAGGATGAGATATACAAAGGCGTGAATCCTTTAGAAGCTGCGGTTAGAGGAGCTGCTT 1379
|||| |||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 1150 AGAAAGATGAGATTTACAAAGGCGTGAATCCATTAGAAGCTGCGGTTAGGGGAGCTGCCT 1209
Query 1380 TGGAAGGTGCGGTGACTTCAGGGATTCATGATCCTTTTGGGAGCTTAGATCTGTTAACCA 1439
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1210 TGGAAGGTGCGGTGACTTCAGGGATTCATGATCCGTTTGGGAGCTTAGATCTCTTAACCA 1269
Query 1440 TACAAGCCACACCTCTTGCAGTTGGAGTAAGAGCTAACGGAAACAAATTCATACCCGTGA 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 TACAAGCCACACCTCTTGCAGTTGGAGTAAGAGCTAACGGAAACAAATTCATACCCGTGA 1329
Query 1500 TTCCGCGTAACACAATGGTTCCAGCGCGGAAAGACCTCTTCTTCACAACGGTTCAAGACA 1559
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330 TTCCGCGTAACACGATGGTTCCAGCGCGGAAAGACCTCTTCTTCACAACGGTTCAAGACA 1389
Query 1560 ACCAGAAGGAAGCTCTGATCATTATATACGAAGGAGAAGGAGAGACTGTTGAAGAGAATC 1619
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1390 ACCAGAAAGAAGCTCTGATCATTATATACGAAGGAGAAGGAGAGACTGTTGAAGAGAACC 1449
Query 1620 ATCTTCTTGGTTATTTCAAGCTCGTTGGGATTCCGCCAGCACCGAAAGGTGTTCCAGAGA 1679
|||||||||| ||||||||| | |||||||||||||| || || ||||||||||| ||||
Sbjct 1450 ATCTTCTTGGGTATTTCAAGATAGTTGGGATTCCGCCGGCGCCTAAAGGTGTTCCGGAGA 1509
Query 1680 TCAATGTGTGTATGGACATTGATGCATCAAATGCTTTACGGGTTTTCGCAGCTGTGTTGA 1739
||||||| ||||||||||| ||||| || ||||||||||||||||| |||||||||||||
Sbjct 1510 TCAATGTTTGTATGGACATCGATGCGTCGAATGCTTTACGGGTTTTTGCAGCTGTGTTGA 1569
Query 1740 TGCCGGGATCTTCGAGTCCAGTGGTTCCTGTGATTGAGGTGAGGATGCCTACGGTTGATG 1799
||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1570 TGCCGGGATCTTCGACTCCGGTGGTTCCTGTGATTGAGGTGAGGATGCCTACAGTTGATG 1629
Query 1800 ATGGACATGGTTGGTGTGCTCAAGCTTTGAATGTGAAATATGGAGCTACTCTTGATTTGA 1859
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1630 ATGGACATGGTTGGTGTGCTCAAGCTTTGAATGTGAAATATGGATCTACTCTTGATTTGA 1689
Query 1860 TTACTCTTCAGAGAAAGATGTAAGATTAAAATAAAATGGTGTT 1902
||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1690 TTACTCTTCAGAGGAAGATGTAAGATTAAAATAAAATGATGTT 1732
> Ahg933774 jgi|Araly1|933774|scaffold_401762.1
Length=1448
Score = 2137 bits (1157), Expect = 0.0
Identities = 1340/1430 (94%), Gaps = 6/1430 (0%)
Strand=Plus/Plus
Query 476 ATGAAGCGGCTCGTTGGTCGTGTAGACACTGATCCTGTGGTTCACGCTAGCAAGAACCTT 535
|||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGAAGCGGCTCATTGGCCGTGCAGACACTGATCCTGTGGTTCACGCTAGCAAGAACCTT 80
Query 536 CCTTTCTTGGTTCAAACTCTTGATATTGGAGTTAGACCGTTTATTGCAGCTTTGGTGAAC 595
||||||||||||||||||||||| |||||||| ||||||||||| || ||||||||||||
Sbjct 81 CCTTTCTTGGTTCAAACTCTTGACATTGGAGTCAGACCGTTTATCGCGGCTTTGGTGAAC 140
Query 596 AATGCTTGGAGATCAACAACACCAGAGGAAGTTTTAGCTATATTTCTGGTGGAGTTACGT 655
|||||||||||||| || || || |||||||||||||| ||||| || ||||| || |||
Sbjct 141 AATGCTTGGAGATCTACGACTCCTGAGGAAGTTTTAGCGATATTCCTTGTGGAATTGCGT 200
Query 656 CTGATGGCTGAAGCTCAGTTGAAACGTCCTGTGAGAAATGTAGTGCTTACGGTTCCGGTT 715
|| ||||||||||||||||||||||| |||||||||||||| || || ||||||||||||
Sbjct 201 CTAATGGCTGAAGCTCAGTTGAAACGGCCTGTGAGAAATGTGGTACTCACGGTTCCGGTT 260
Query 716 TCGTTCTCTAGGTTCCAGCTCACACGG-TTCGAAAGAGCTTGCGCTATGGCTGGACTTCA 774
||||| ||||||||||||||||||||| || ||| | ||||| |||||||||||||||||
Sbjct 261 TCGTTTTCTAGGTTCCAGCTCACACGGATT-GAACGTGCTTGTGCTATGGCTGGACTTCA 319
Query 775 TGTTCTTCGTTTGATGCCGGAACCAACTGCTATTGCGTTGCTTTATGCGCAACAGCAGCA 834
||| |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 320 TGTACTTCGTTTGATGCCAGAACCAACTGCAATTGCGTTACTTTATGCGCAACAGCAGCA 379
Query 835 GATGACTACCCATGATAACATGGGAAGCGGAAGCGAGAGGCTTGCGGTTATATTCAATAT 894
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 GATGACTACGCACGATAACATGGGAAGCGGAAGCGAGAGGCTTGCGGTTATATTCAATAT 439
Query 895 GGGAGCTGGTTACTGCGATGTTGCGGTTACTGCTACTGCTGGTGGTGTTTCACAGATAAA 954
||| |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 440 GGGTGCTGGTTATTGCGATGTTGCTGTTACTGCAACTGCTGGTGGTGTTTCACAGATAAA 499
Query 955 AGCTTTAGCTGGTAGCCCCATTGGGGGTGAAGACATTTTGCAGAACACAATTCGCCATAT 1014
|||||||||||| ||||||||||| || |||||| |||||||||||||||| ||||||||
Sbjct 500 AGCTTTAGCTGGAAGCCCCATTGGAGGAGAAGACGTTTTGCAGAACACAATGCGCCATAT 559
Query 1015 CGCTCCACCTAA-TGAAGAAGCTTCGGGGTTGCTTCGTGTAGCGGCACAGGACGCGATTC 1073
|| ||||| || ||||||||||||||||||||| ||||||||| |||||||||| ||||
Sbjct 560 TGCGCCACC-AACTGAAGAAGCTTCGGGGTTGCTCCGTGTAGCGACACAGGACGCTATTC 618
Query 1074 ACAGGCTAACGGATCAAGAAAATGTCCAAATTGAAGTGGATTTGGGAAATGGTAACAAGA 1133
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 619 ACAGGCTATCGGATCAAGAAAATGTCCAAATTGAAGTGGATTTGGGAAACGGTAACAAGA 678
Query 1134 TATCCAAGGTTCTTGATAGGTTAGAGTTTGAGGAAGTGAACCAGAAGGTATTTGAGGAAT 1193
| ||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||
Sbjct 679 TTTCCAAGGTTCTTGATAGATTGGAGTTTGAGAAAGTGAACCAGAAGGTATTTGAGGAAT 738
Query 1194 GTGAGAGACTTGTTGTGCAGTGCCTGCGAGATGCGAGAGTCAATGG-TGGTGATATCGAT 1252
|||||||||||||||||||||| |||||||||||||||||| | || |||||||||||||
Sbjct 739 GTGAGAGACTTGTTGTGCAGTGTCTGCGAGATGCGAGAGTCGA-GGTTGGTGATATCGAT 797
Query 1253 GATTTGATAATGGTTGGAGGGTGTTCGTACATCCCGAAAGTAAGAACTATTATCAAGAAC 1312
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 798 GATGTGATAATGGTTGGAGGGTGTTCTTACATCCCGAAAGTAAGAACTATTATCAAGAAC 857
Query 1313 GTATGCAAGAAGGATGAGATATACAAAGGCGTGAATCCTTTAGAAGCTGCGGTTAGAGGA 1372
|| |||||||| || ||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct 858 GTGTGCAAGAAAGACGAGATTTACAAAGGCGTGAATCCGTTAGAAGCTGCGGTTAGGGGA 917
Query 1373 GCTGCTTTGGAAGGTGCGGTGACTTCAGGGATTCATGATCCTTTTGGGAGCTTAGATCTG 1432
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 918 GCTGCCTTGGAAGGTGCGGTGACTTCAGGGATTCATGATCCGTTTGGGAGCTTAGATCTC 977
Query 1433 TTAACCATACAAGCCACACCTCTTGCAGTTGGAGTAAGAGCTAACGGAAACAAATTCATA 1492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 TTAACCATACAAGCCACACCTCTTGCAGTTGGAGTAAGAGCTAACGGAAACAAATTCATA 1037
Query 1493 CCCGTGATTCCGCGTAACACAATGGTTCCAGCGCGGAAAGACCTCTTCTTCACAACGGTT 1552
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1038 CCCGTGATTCCGCGTAACACGATGGTTCCAGCGCGGAAAGACCTCTTCTTCACAACGGTT 1097
Query 1553 CAAGACAACCAGAAGGAAGCTCTGATCATTATATACGAAGGAGAAGGAGAGACTGTTGAA 1612
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 CAAGACAACCAGAAAGAAGCTCTGATCATTATATACGAAGGAGAAGGAGAGACTGTTGAA 1157
Query 1613 GAGAATCATCTTCTTGGTTATTTCAAGCTCGTTGGGATTCCGCCAGCACCGAAAGGTGTT 1672
||||| ||||||||||| ||||||||| | |||||||||||||| || || |||||||||
Sbjct 1158 GAGAACCATCTTCTTGGGTATTTCAAGATAGTTGGGATTCCGCCGGCGCCTAAAGGTGTT 1217
Query 1673 CCAGAGATCAATGTGTGTATGGACATTGATGCATCAAATGCTTTACGGGTTTTCGCAGCT 1732
|| ||||||||||| ||||||||||| ||||| || ||||||||||||||||| ||||||
Sbjct 1218 CCGGAGATCAATGTTTGTATGGACATCGATGCGTCGAATGCTTTACGGGTTTTTGCAGCT 1277
Query 1733 GTGTTGATGCCGGGATCTTCGAGTCCAGTGGTTCCTGTGATTGAGGTGAGGATGCCTACG 1792
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1278 GTGTTGATGCCGGGATCTTCGACTCCGGTGGTTCCTGTGATTGAGGTGAGGATGCCTACA 1337
Query 1793 GTTGATGATGGACATGGTTGGTGTGCTCAAGCTTTGAATGTGAAATATGGAGCTACTCTT 1852
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1338 GTTGATGATGGACATGGTTGGTGTGCTCAAGCTTTGAATGTGAAATATGGATCTACTCTT 1397
Query 1853 GATTTGATTACTCTTCAGAGAAAGATGTAAGATTAAAATAAAATGGTGTT 1902
|||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1398 GATTTGATTACTCTTCAGAGGAAGATGTAAGATTAAAATAAAATGGTGTT 1447
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78694446170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5