BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32140.1
Length=1291
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915660 jgi|Araly1|915660|Al_scaffold_0008_411 521 4e-147
Ahg472220 jgi|Araly1|472220|fgenesh2_kg.1__2174__AT1G19960.1 191 1e-47
> Ahg915660 jgi|Araly1|915660|Al_scaffold_0008_411
Length=1149
Score = 521 bits (282), Expect = 4e-147
Identities = 461/547 (84%), Gaps = 14/547 (3%)
Strand=Plus/Plus
Query 156 cttcttctccttcttcttcttctAATGTATCAGTGATCCCAACGGGACCTCAAGTGTTCA 215
|||||||| |||| |||||||| ||||||||| |||| ||||| |||||||||| ||||
Sbjct 23 CTTCTTCTTCTTCCTCTTCTTCCAATGTATCATTGATTTCAACGAGACCTCAAGTATTCA 82
Query 216 TCAGTTTTAGGGGAAAAGAGCTACGCAAAGGCTTCATCAGTTTTCTTGTGCCTGCCTTG- 274
||| ||| | ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 83 TCAATTTCCGAGGAAAAGAGCTACGCAAAGGCTTCATCAGCTTTCTTGTGCCTGCCTTGA 142
Query 275 AAGaaaaaaaaCATCAACGTCTTTATAGATGAGCACGAGGTGAGGGGAAAAGACCTAATC 334
||| | || ||||||||||| |||||||| || || |||| |||||| ||| | |||| |
Sbjct 143 AAG-ACAATAACATCAACGTGTTTATAGACGATCAAGAGGAGAGGGGCAAATATCTAA-C 200
Query 335 -AGCCTGTTTAG-GAGGATAGGTGAGTCAAAAATCGCGTTGGTAATCTTCTCTGAGGGA- 391
||||||||| | ||||| |||||||| ||||| |||||||| |||||||| || ||
Sbjct 201 TAGCCTGTTT-GATAGGATGGGTGAGTCGAAAATAGCGTTGGTTATCTTCTCGGA-AGAT 258
Query 392 TACACCGAGTCAAAATGGTGTTTGGACGAGCTGGTACAGATC-AAGAAATGCGTTGATCA 450
|||||||||||||||||||||||||| ||||||||||||||| ||| |||| | |||||
Sbjct 259 TACACCGAGTCAAAATGGTGTTTGGATGAGCTGGTACAGATCAAAG-AATGTATGGATCA 317
Query 451 AAAGAAA-ATCATAGCGATTCCCATCTTCTACAAGCTTGATCCCGCAGTGGTGAAGGGTC 509
||| ||| || || |||||||||||||||||||||||||||||| |||||||| |||
Sbjct 318 AAACAAACTTC-GAGTGATTCCCATCTTCTACAAGCTTGATCCCGCGGTGGTGAAACGTC 376
Query 510 TTAAAGGAAAATTCGGCGATAAATTCAGGGATCTG-ATTGAGAGATATCATCATGAACCA 568
|| |||||||||| |||||| |||||||||||||| | | | |||||| | ||| |||||
Sbjct 377 TTCAAGGAAAATTTGGCGATCAATTCAGGGATCTGGAAT-ATAGATATAAACATAAACCA 435
Query 569 GAAAGATACCAGAAATGGACGGAAGCTTTGACTTCTGTTTCCCGAACGTTTGCATTGTGC 628
|||||| ||| ||||||| ||||||| ||| |||||||| || ||||||||| |||| |
Sbjct 436 GAAAGACCCCAAAAATGGAAGGAAGCTGTGATTTCTGTTTGCCAAACGTTTGCCTTGTTC 495
Query 629 TTACCAGAACACAGTGATAAATCTGAGAAGGATTTCATAAGGTCAATCATCAAGGAAGTT 688
|| || ||||||||||| | ||| || || |||||||||| || |||| ||||||| |||
Sbjct 496 TTGCCCGAACACAGTGACACATCCGATAAAGATTTCATAATGTTAATCGTCAAGGAGGTT 555
Query 689 AAGAAAG 695
|||||
Sbjct 556 GGGAAAG 562
> Ahg472220 jgi|Araly1|472220|fgenesh2_kg.1__2174__AT1G19960.1
Length=386
Score = 191 bits (103), Expect = 1e-47
Identities = 124/134 (93%), Gaps = 1/134 (1%)
Strand=Plus/Plus
Query 1059 GTAGTAACGGAGGAGGTGGTGGAAGTGGCAGTGGAAGCGGTAGCTCCCTTGAGAATCAGC 1118
|||||||||| |||||||||||||||||| ||||||||||| ||||| ||| ||||||||
Sbjct 106 GTAGTAACGGGGGAGGTGGTGGAAGTGGCGGTGGAAGCGGTGGCTCCTTTGGGAATCAGC 165
Query 1119 CGAGGAGATCAAAGGTGAGGAAGCAAGTGTGGGCTGAAGTTCTCGGCATCTCATCCGACT 1178
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||
Sbjct 166 CGAGGAGATCAAAGGTGAGGAAGCAAGTGTGGGCTGGAGTTCTCGGCATCTCCTCCAACT 225
Query 1179 CCACCATCATATTA 1192
|||||| || ||||
Sbjct 226 CCACCAACA-ATTA 238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48263612922
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5