BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G32140.1 Length=1291 Score E Sequences producing significant alignments: (Bits) Value Ahg915660 jgi|Araly1|915660|Al_scaffold_0008_411 521 4e-147 Ahg472220 jgi|Araly1|472220|fgenesh2_kg.1__2174__AT1G19960.1 191 1e-47 > Ahg915660 jgi|Araly1|915660|Al_scaffold_0008_411 Length=1149 Score = 521 bits (282), Expect = 4e-147 Identities = 461/547 (84%), Gaps = 14/547 (3%) Strand=Plus/Plus Query 156 cttcttctccttcttcttcttctAATGTATCAGTGATCCCAACGGGACCTCAAGTGTTCA 215 |||||||| |||| |||||||| ||||||||| |||| ||||| |||||||||| |||| Sbjct 23 CTTCTTCTTCTTCCTCTTCTTCCAATGTATCATTGATTTCAACGAGACCTCAAGTATTCA 82 Query 216 TCAGTTTTAGGGGAAAAGAGCTACGCAAAGGCTTCATCAGTTTTCTTGTGCCTGCCTTG- 274 ||| ||| | ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 83 TCAATTTCCGAGGAAAAGAGCTACGCAAAGGCTTCATCAGCTTTCTTGTGCCTGCCTTGA 142 Query 275 AAGaaaaaaaaCATCAACGTCTTTATAGATGAGCACGAGGTGAGGGGAAAAGACCTAATC 334 ||| | || ||||||||||| |||||||| || || |||| |||||| ||| | |||| | Sbjct 143 AAG-ACAATAACATCAACGTGTTTATAGACGATCAAGAGGAGAGGGGCAAATATCTAA-C 200 Query 335 -AGCCTGTTTAG-GAGGATAGGTGAGTCAAAAATCGCGTTGGTAATCTTCTCTGAGGGA- 391 ||||||||| | ||||| |||||||| ||||| |||||||| |||||||| || || Sbjct 201 TAGCCTGTTT-GATAGGATGGGTGAGTCGAAAATAGCGTTGGTTATCTTCTCGGA-AGAT 258 Query 392 TACACCGAGTCAAAATGGTGTTTGGACGAGCTGGTACAGATC-AAGAAATGCGTTGATCA 450 |||||||||||||||||||||||||| ||||||||||||||| ||| |||| | ||||| Sbjct 259 TACACCGAGTCAAAATGGTGTTTGGATGAGCTGGTACAGATCAAAG-AATGTATGGATCA 317 Query 451 AAAGAAA-ATCATAGCGATTCCCATCTTCTACAAGCTTGATCCCGCAGTGGTGAAGGGTC 509 ||| ||| || || |||||||||||||||||||||||||||||| |||||||| ||| Sbjct 318 AAACAAACTTC-GAGTGATTCCCATCTTCTACAAGCTTGATCCCGCGGTGGTGAAACGTC 376 Query 510 TTAAAGGAAAATTCGGCGATAAATTCAGGGATCTG-ATTGAGAGATATCATCATGAACCA 568 || |||||||||| |||||| |||||||||||||| | | | |||||| | ||| ||||| Sbjct 377 TTCAAGGAAAATTTGGCGATCAATTCAGGGATCTGGAAT-ATAGATATAAACATAAACCA 435 Query 569 GAAAGATACCAGAAATGGACGGAAGCTTTGACTTCTGTTTCCCGAACGTTTGCATTGTGC 628 |||||| ||| ||||||| ||||||| ||| |||||||| || ||||||||| |||| | Sbjct 436 GAAAGACCCCAAAAATGGAAGGAAGCTGTGATTTCTGTTTGCCAAACGTTTGCCTTGTTC 495 Query 629 TTACCAGAACACAGTGATAAATCTGAGAAGGATTTCATAAGGTCAATCATCAAGGAAGTT 688 || || ||||||||||| | ||| || || |||||||||| || |||| ||||||| ||| Sbjct 496 TTGCCCGAACACAGTGACACATCCGATAAAGATTTCATAATGTTAATCGTCAAGGAGGTT 555 Query 689 AAGAAAG 695 ||||| Sbjct 556 GGGAAAG 562 > Ahg472220 jgi|Araly1|472220|fgenesh2_kg.1__2174__AT1G19960.1 Length=386 Score = 191 bits (103), Expect = 1e-47 Identities = 124/134 (93%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 1059 GTAGTAACGGAGGAGGTGGTGGAAGTGGCAGTGGAAGCGGTAGCTCCCTTGAGAATCAGC 1118 |||||||||| |||||||||||||||||| ||||||||||| ||||| ||| |||||||| Sbjct 106 GTAGTAACGGGGGAGGTGGTGGAAGTGGCGGTGGAAGCGGTGGCTCCTTTGGGAATCAGC 165 Query 1119 CGAGGAGATCAAAGGTGAGGAAGCAAGTGTGGGCTGAAGTTCTCGGCATCTCATCCGACT 1178 |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| Sbjct 166 CGAGGAGATCAAAGGTGAGGAAGCAAGTGTGGGCTGGAGTTCTCGGCATCTCCTCCAACT 225 Query 1179 CCACCATCATATTA 1192 |||||| || |||| Sbjct 226 CCACCAACA-ATTA 238 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48263612922 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5