BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32160.3
Length=1553
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933777 jgi|Araly1|933777|scaffold_401765.1 1282 0.0
Ahg933776 jgi|Araly1|933776|scaffold_401764.1 1050 0.0
> Ahg933777 jgi|Araly1|933777|scaffold_401765.1
Length=1572
Score = 1282 bits (694), Expect = 0.0
Identities = 924/1033 (89%), Gaps = 23/1033 (2%)
Strand=Plus/Plus
Query 401 AAACACATGCGCGAGCCAATAACAGGAGCACTGTCTATGGAGGAGCTCCAAAGGGAGGAA 460
|||||||| || |||||||||||||||| ||||||| |||||||| |||||| ||| |
Sbjct 534 AAACACATTCGTGAGCCAATAACAGGAG---TGTCTATCGAGGAGCTTCAAAGGAAGG-A 589
Query 461 CATCATCATGATCATTCCCT-CAA-GA--A---TGCAGAGATAAGACTCAATAACAAGAC 513
| | ||| ||||||| | | ||| || | |||||| | | || | | ||| |||||
Sbjct 590 -AGC-TCAAGATCATT-CATCCAAGGATGACTCTGCAGACACAGGAATTACTAATAAGAC 646
Query 514 ATGTGAATTTGATGGAGGCCACTTAAATCATGACCATGGCAGTGTACCATTTTCATCTCA 573
|||||||| |||||||||||| |||||||||||||||||||||||| |||||||||| ||
Sbjct 647 ATGTGAATGTGATGGAGGCCAGTTAAATCATGACCATGGCAGTGTATCATTTTCATCCCA 706
Query 574 TGATTGGTTGGATTCTTCGTTACAGGCGCATGTTCCTCTGGTTGATGTAAATAAGGTTCG 633
||||||||||||||| ||||||||| | ||||||||||||||||||||| ||||||||||
Sbjct 707 TGATTGGTTGGATTCATCGTTACAGACACATGTTCCTCTGGTTGATGTAGATAAGGTTCG 766
Query 634 TTGGGTAATAAGGAATATAGTTCGAGACTGGGGAGCAGAGGGTCAGAGAGAACGAGATGA 693
||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 767 TTGTATTATAAGGAATATAGTTCGAGACTGGGCAGCAGAGGGTCAGAGAGAACGAGATCA 826
Query 694 ATGCTACAAGCCTATCCTTGAAGAGCTTGATTCCTTGTTTCCTGATCGTCACAAGGAGAG 753
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 827 ATGCTACAAGCCTATCCTTGAAGAGCTTGATTCCTTGTTTCCTGATCGTTTGAAGGAGAG 886
Query 754 CACTCGTCCAGCCTGTTTAGTCCCTGGTGCTGGACTTGGGCGGCTGGCCCTTGAAATTTC 813
||| | ||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 887 CACCCCTCCTGCCTGTTTAGTCCCTGGTGCTGGACTTGGACGTCTGGCCCTTGAAATTTC 946
Query 814 TTGTCTAGGTTTCAGAAGCCAAGGCAATGAAGTTTCATACTACATGATGTTATGCTCAAG 873
|||||||||||||| ||||||||| |||||| ||||||||||||||||| ||||||||||
Sbjct 947 TTGTCTAGGTTTCATAAGCCAAGGAAATGAATTTTCATACTACATGATGATATGCTCAAG 1006
Query 874 TTTTATTCTTAATTATACACAATTGCCTGGTGAGTGGACAATATACCCCTGGATACACA- 932
||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1007 TTTTATTCTGAATTATACACAAGTCCCTGGTGAGTGGACAATATACCCCTGGATACACAG 1066
Query 933 CTAACTGCAATTCACTCTCGGATGATGATCAACTACGCCCTATTTCTATTCCTGATATTC 992
| ||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1067 C-AACTGCAATTCTCTCTCGGACAATGATCAACTACGCCCTATTGCTATTCCTGATATTC 1125
Query 993 ATCCTGCAAGTGCAGGAGTAACAGAAAGTTTCTCAATGTGTCGTGGTGATTTTGTTGAAG 1052
||||||||||||||||| |||||||| ||||||| |||||| |||| ||||||||||| |
Sbjct 1126 ATCCTGCAAGTGCAGGAATAACAGAAGGTTTCTCTATGTGTGGTGGGGATTTTGTTGAGG 1185
Query 1053 TATTCAATGAATCAAGTCAAGCAGGAATGTGGGATGCAGTTGTGACTTGCTTTTTCATTG 1112
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 TATACAATGAATCAAGTCATGCAGGAATGTGGGATGCAGTTGTGACTTGCTTTTTCATTG 1245
Query 1113 ACACGGCTCATAACATCATCGAGTACATCGAAACCATATCCAAGATTTTAAAGGATGGAG 1172
|||| |||||||| ||||||||||||| ||||||||||||||||| |||| ||||||
Sbjct 1246 ACACAGCTCATAATGTCATCGAGTACATTGAAACCATATCCAAGATCCTAAAAAATGGAG 1305
Query 1173 GAGTTTTGATAAATCTAGGACCTCTGTTGTATCACTTTGCAGACGAGCAG--GGCCTTGA 1230
|||||| ||||||| ||||||||||||||||||| ||||| ||| | || |||| |||
Sbjct 1306 GAGTTTGGATAAATTTAGGACCTCTGTTGTATCATTTTGCGGAC-A-CATATGGCCATGA 1363
Query 1231 AAATGAAATGTCGATTGAGCTAAGTTTGGAGGATGTAAAGAGAGTTGCTTCACATTATGG 1290
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 AAATGAAATGTCGATCGAGCTAAGTTTGGAGGATGTAAAGAGAGTTGCTTCACATTATGG 1423
Query 1291 GTTTGAGATGGAGAAAGAAAAAACAATAGAAACAACGTACTCTACAAACCCCCGGTCTAT 1350
||| | ||| |||||||||| |||||| |||||||| ||| ||||||| |||||| ||||
Sbjct 1424 GTTCGTGATTGAGAAAGAAAGAACAATTGAAACAACTTACACTACAAATCCCCGGGCTAT 1483
Query 1351 GATGAAGAACCGATACTATCCTGTCTTCTGGACAATGAGGAAGAAGTGTGCTATAACAAC 1410
|||| ||||||| |||||| ||| |||||||||||||||||||| |||||| ||| ||||
Sbjct 1484 GATGCAGAACCGGTACTATACTGCCTTCTGGACAATGAGGAAGACGTGTGCAATATCAAC 1543
Query 1411 AACTTAACCAAAT 1423
||||||||||
Sbjct 1544 ---TTAACCAAAT 1553
Score = 313 bits (169), Expect = 3e-84
Identities = 241/275 (88%), Gaps = 7/275 (3%)
Strand=Plus/Plus
Query 128 GAGGAGAAAATAAGCCG-CAAGAAGAATCCTGAAGAAGAAGCTCTTGAAGCTAAATGTCT 186
|||||||||||| |||| | ||||||| | |||||||| | ||| ||||| |||| |||
Sbjct 135 GAGGAGAAAATACGCCGTC-AGAAGAAGCTTGAAGAAGCA-CTC--GAAGCCAAATCTCT 190
Query 187 TC-CCGGAATCATCAGTGCTTATCTCAATTATCCCAAGGCTGCGGAAGAAAATCTGAAAA 245
|| || | || ||||||||||| ||||||||||| ||||| ||||||| || ||||||
Sbjct 191 TCGCC-GCATTATCAGTGCTTACCTCAATTATCCGGAGGCTTCGGAAGAGGATTTGAAAA 249
Query 246 AATGCGAAAGATCATATCAGAAGCTGTCTCCTGCGCACAAGGCATTGGTAACCCATTTCC 305
||| ||||||||||||| ||||||||||||||| ||||||||||||||| |||||| ||
Sbjct 250 GATGGGAAAGATCATATCGGAAGCTGTCTCCTGCACACAAGGCATTGGTACCCCATTACC 309
Query 306 CTATGAAGTTGCAGAGATTAAGAAGGTGTATATTGATGAATTCACATTTCATATATAATA 365
|||||||||| |||||||||||||||||||||| | ||||||| ||||||||| |||||
Sbjct 310 CTATGAAGTTTCAGAGATTAAGAAGGTGTATATCGGCGAATTCATATTTCATATTTAATA 369
Query 366 TGCTTCAGGCTTTTGAGCCCCCTATAGACTTGAGT 400
|||||||||||||||||||||||||||||||||||
Sbjct 370 TGCTTCAGGCTTTTGAGCCCCCTATAGACTTGAGT 404
> Ahg933776 jgi|Araly1|933776|scaffold_401764.1
Length=1116
Score = 1050 bits (568), Expect = 0.0
Identities = 689/746 (92%), Gaps = 14/746 (2%)
Strand=Plus/Plus
Query 21 CCATAATGATTTCATCGTCAGAGATGATGGCGACGGAGAAGGCTCCGGAATTTGTAACAG 80
||||||||||||||| ||||||||||||||||||||||| ||| || |||||||| |||
Sbjct 17 CCATAATGATTTCATTGTCAGAGATGATGGCGACGGAGACGGCACCAGAATTTGTTACAA 76
Query 81 CCATGGCAACTGAAACTGAACGGATAGGGAATTCGAGGGAAGTAGAT---------GAGG 131
||| | ||| |||||||||||||||| ||||||||| ||||||||| ||||
Sbjct 77 CCACGAAAACGGAAACTGAACGGATAGAGAATTCGAGTGAAGTAGATGAGGAAGAAGAGG 136
Query 132 AGAAAATAAGCCG-CAAGAAGAATCCTGAAGAAGAAGCTCTTGAAGCTAAATGTCTTCCC 190
|||||||| |||| | ||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 137 AGAAAATACGCCGTC-AGAAGAAGCCTGAAGAAGAAGCTCTCGAAGCCAAATGTCTTCCC 195
Query 191 GGAATCATCAGTGCTTATCTCAATTATCCCAAGGCTGCGGAAGAAAATCTGAAAAAATGC 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 GGAATCATCAGTGCTTATCTCAATTATCCCAAGGCTGCGGAAGAAAATCTGAAAAAATGC 255
Query 251 GAAAGATCATATCAGAAGCTGTCTCCTGCGCACAAGGCATTGGTAACCCATTTCCCTATG 310
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 256 GAAAGGTCTTATCAGAAGCTGTCTCCTGCGCACAAGGCATTGGTAACCCATTTCCCTACG 315
Query 311 AAGTTGCAGAGATTAAGAAGGTGTATATTGATGAATTCACATTTCATATATAATATGCTT 370
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 316 AAGTTGCAGAGATTAAGAAGGTGTATATCGATGAATTCACATTTCATATATAATATGATT 375
Query 371 CAGGCTTTTGAGCCCCCTATAGACTTGAGTAAACACATGCGCGAGCCAATAACAGGAGCA 430
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 376 CAGGCTTTTGAGCCCCCTATAGACTTGAGTAAACACATACGGGAGCCAATAACAGGAGCA 435
Query 431 CTGTCTATGGAGGAGCTCCAAAGGGAGGAA-C--ATCATCATGATCATTCCCTCAAGAAT 487
|||||||| |||| | | |||||||| ||| | ||||||||||||||||||||||||||
Sbjct 436 CTGTCTATCGAGGGGTTTCAAAGGGATGAAACTCATCATCATGATCATTCCCTCAAGAAT 495
Query 488 GCAGAGATAAGACTCAATAACAAGACATGTGAATTTGATGGAGGCCACTTAAATCATGAC 547
||||||||||| ||||||| |||||||||||||||| ||||||||| ||| |||||||
Sbjct 496 ACAGAGATAAGAATCAATAATAAGACATGTGAATTTGTTGGAGGCCAGATAAGTCATGAC 555
Query 548 CATGGCAGTGTACCATTTTCATCTCATGATTGGTTGGATTCTTCGTTACAGGCGCATGTT 607
|||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||
Sbjct 556 CATGGCAGTGTACCATTTTCATCTCAGGATTGGTTGGATTCATCGTTACAGACGCATGTT 615
Query 608 CCTCTGGTTGATGTAAATAAGGTTCGTTGGGTAATAAGGAATATAGTTCGAGACTGGGGA 667
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 CCTCAGGTTGATGTAAATAAGGTTCGTTGGGTAATAAGGAATATAGTTCGAGACTGGGGA 675
Query 668 GCAGAGGGTCAGAGAGAACGAGATGAATGCTACAAGCCTATCCTTGAAGAGCTTGATTCC 727
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 676 TCAGAGGGTCAGAGAGAAAGAGATGAATGCTACAAGCCTATCCTTGAAGAGATTGATTCC 735
Query 728 TTGTTTCCTGATCGTCACAAGGAGAG 753
||||| ||||||||||||||||||||
Sbjct 736 TTGTTCCCTGATCGTCACAAGGAGAG 761
Score = 302 bits (163), Expect = 7e-81
Identities = 179/187 (96%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 889 TACACAATTGCCTGGTGAGTGGACAATATACCCCTGGATACACACTAACTGCAATTCACT 948
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 762 TACACAATCGCCTGATGAGTGGACAATATACCCCTGGATACACACTAACTGCAATTCCCT 821
Query 949 CTCGGATGATGATCAACTACGCCCTATTTCTATTCCTGATATTCATCCTGCAAGTGCAGG 1008
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 822 CTCGAATGATGATCAACTACGCCCTATTTCTATTCCTGATATTCATCCTCCAAGTGCAGG 881
Query 1009 AGTAACAGAAAGTTTCTCAATGTGTCGTGGTGATTTTGTTGAAGTATTCAATGAATCAAG 1068
|||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 882 AGTAACAGAAGGTTTCTCTATGTGTGGTGGTGATTTTGTTGAAGTATTCAATGAATCAAG 941
Query 1069 TCAAGCA 1075
|||||||
Sbjct 942 TCAAGCA 948
Score = 148 bits (80), Expect = 9e-35
Identities = 90/95 (95%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 1211 GCAGACGAGCAGGGCCTTGAAAATGAAATGTCGATTGAGCTAAGTTTGGAGGATGTAAAG 1270
||| |||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 GCATACGAACATGGCCTGGAAAATGAAATGTCGATTGAGCTAAGTTTGGAGGATGTAAAG 1005
Query 1271 AGAGTTGCTTCACATTATGGGTTTGAGATGGAGAA 1305
|| ||||||||||||||||||||||||||||||||
Sbjct 1006 AGGGTTGCTTCACATTATGGGTTTGAGATGGAGAA 1040
Score = 106 bits (57), Expect = 6e-22
Identities = 73/80 (91%), Gaps = 4/80 (5%)
Strand=Plus/Plus
Query 1351 GATGAAGAACCGATACTATCCTGTCTTCTGGACAATGAGGAAGAAGTGTGCTATAACAAC 1410
|||| |||| ||||||||||||||||||||||||||||||||||| |||| | || ||||
Sbjct 1032 GATGGAGAATCGATACTATCCTGTCTTCTGGACAATGAGGAAGAAATGTG-T-TA-CAAC 1088
Query 1411 AACTTAA-CCAAATATTCCT 1429
||||||| ||||||||||||
Sbjct 1089 AACTTAAACCAAATATTCCT 1108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58163804115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5