BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32190.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482146 jgi|Araly1|482146|fgenesh2_kg.4__1206__AT2G32190.1 531 2e-150
Ahg933782 jgi|Araly1|933782|scaffold_401770.1 213 1e-54
Ahg901031 jgi|Araly1|901031|Al_scaffold_0004_1681 182 3e-45
Ahg470534 jgi|Araly1|470534|fgenesh2_kg.1__488__AT1G05340.1 119 2e-26
> Ahg482146 jgi|Araly1|482146|fgenesh2_kg.4__1206__AT2G32190.1
Length=453
Score = 531 bits (287), Expect = 2e-150
Identities = 390/436 (89%), Gaps = 21/436 (5%)
Strand=Plus/Plus
Query 66 AAAACAAATCATAATCTGTTCGAAGATGAGCCAATACAGCCAAAACCAATCTTCAGGAGC 125
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 38 AAAACAAATCATAATCCGTTCGAAGATGAGCCAATTCAGCCAAAACCAATCTTCAGGAGC 97
Query 126 TTATCCTACGCCGCCAGTGTCTACCGGCCCTTATATGACACCGCCACCGCTCGGTTACCC 185
||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||
Sbjct 98 TTATCCTACGCCGCCAGTGTCTACCGGCCCTTACGTGGCACCACCACCGCTCGGTTACCC 157
Query 186 GACGAGCGACATCAGTCATGCCACGGTGGCTCCGGTGGAGACAAAGTCCAAGGGTGATGG 245
||||| |||| |||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 158 GACGAATGACACCAGTCATGCCCCGGTGGCTCCGGTGGAGACAAAATCCAAGGGTGATGG 217
Query 246 ATTCTTGAAAGGCTGTCTTGCGGCCATGTGTTGCTGTTGTGTCCTCGACGCCTGCTTCTG 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 ATTCTTGAAAGGCTGTCTTGCGGCCATGTGTTGCTGTTGTGTCCTCGACGCCTGCTTCTG 277
Query 306 AATTTG-AGAAATTCGATTGTTTATTTGATGTTTCATGCAAATTATTTATCATTGTATTT 364
|||| | || |||| ||| | ||||||||| |||||||||||||||||||| || |||||
Sbjct 278 AATTCGGAGGAATTGGATGGGTTATTTGATATTTCATGCAAATTATTTATCCTTTTATTT 337
Query 365 TGCTTTACCCAAATTATATTTTGGGATTTGTATGACATTTGGAACTTCTAATATTTCTTA 424
||||||||||||||||||||||||||||||||| ||| || ||| | | || |||
Sbjct 338 TGCTTTACCCAAATTATATTTTGGGATTTGTATTT-ATT---AA-TTC-A-T-TT-CTT- 387
Query 425 ATTCATTTATTTATTACTCTTTCTTTTGTATTGTGTAATTTTTACCTTCTTATAAATAAA 484
| ||| | | || | ||| ||| ||||||||||||||||||| |||||| ||||||
Sbjct 388 -T--ATT-ACTG-TT--T-TTT-TTT-GTATTGTGTAATTTTTACCATCTTATTAATAAA 437
Query 485 TCGTTTTTTCTCTTAC 500
||||||||||||||||
Sbjct 438 TCGTTTTTTCTCTTAC 453
Score = 63.9 bits (34), Expect = 1e-09
Identities = 36/37 (97%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 13 TCACTTCATATTAATCTACACCTCTACATACGATTTT 49
||| |||||||||||||||||||||||||||||||||
Sbjct 1 TCAATTCATATTAATCTACACCTCTACATACGATTTT 37
> Ahg933782 jgi|Araly1|933782|scaffold_401770.1
Length=235
Score = 213 bits (115), Expect = 1e-54
Identities = 198/233 (85%), Gaps = 25/233 (11%)
Strand=Plus/Plus
Query 76 ATAATC-TGTTCGAAGATGAGCCAATACAGCCAAAACCAATCTTCAGGAGCTTATCCTAC 134
|||||| | ||||||||||||||||||||||| || || | || ||||||||||||
Sbjct 6 ATAATCAT-TTCGAAGATGAGCCAATACAGCC--AA--AA-C--CA--AGCTTATCCTAC 55
Query 135 GCCGCCAGTGTCTACCGGCCCTTATATGACACCGCCACCGCTCGGTTACCCGACGAGCGA 194
||| |||||||||||||||||||| || |||| |||||||| |||||||| |||| |||
Sbjct 56 GCCACCAGTGTCTACCGGCCCTTACGTGGCACCACCACCGCTAGGTTACCCAACGAACGA 115
Query 195 CATC-AGTCATGCCACGGTGGCTCCGGTGGAGACAAAGTCCAAGGGTGATGGATTCTTGA 253
|| | |||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 116 CA-CAAGTCATGCCACGGTGGCTCCGGTGGAGACAAAGTCCAAGGGTGATGGA--C---A 169
Query 254 AAGGCTGTCTTGCGGCCATGTGTTGCTGTTGTGTCCTCGACGCCTGCTTCTGA 306
| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 170 -----T--CTTGCGGCCATGTGTTGTTGTTGTGTCCTCGACGCATGCTTCTGA 215
> Ahg901031 jgi|Araly1|901031|Al_scaffold_0004_1681
Length=228
Score = 182 bits (98), Expect = 3e-45
Identities = 187/227 (82%), Gaps = 17/227 (7%)
Strand=Plus/Plus
Query 91 ATGAGCCAATACAGCCAAAACCAATCTT-CAGGAGCTTATCCTACGCCGCCAGTGTCTAC 149
||||||||||||||||||||||||| || |||||||||| | |||||||||||||||||
Sbjct 1 ATGAGCCAATACAGCCAAAACCAAT-TTGAAGGAGCTTATACAACGCCGCCAGTGTCTAC 59
Query 150 CGG-CCCTTATATGACACCGCCACCGCTCGGTTACCCGACGAGCGACATC-AGTCATGCC 207
|| ||| || || |||||||||||||||||||||| |||| | ||| | | |||||||
Sbjct 60 GGGTCCC-TACGTGGCACCGCCACCGCTCGGTTACCCAACGAACCACA-CAACTCATGCC 117
Query 208 ACGGTGGCTCCGGTGGAGACAAAGTC-CAA---G--G--G-TGATGGATTCTTGAAAGGC 258
||||| |||| || ||||||||||| || | | | |||||||||||||||||||
Sbjct 118 ACGGTTTCTCCTGTCGAGACAAAGTCTAAAGGTGAAGCTGCTGATGGATTCTTGAAAGGC 177
Query 259 TGTCTTGCGGCCATGTGTTGC-TGTTGTGTCCTCGACGCCTGCTTCT 304
||||||||| || ||| | || ||||| ||||| ||||| ||| |||
Sbjct 178 TGTCTTGCGACCCTGT-TGGCCTGTTGCGTCCTTGACGCATGCATCT 223
> Ahg470534 jgi|Araly1|470534|fgenesh2_kg.1__488__AT1G05340.1
Length=679
Score = 119 bits (64), Expect = 2e-26
Identities = 184/239 (77%), Gaps = 20/239 (8%)
Strand=Plus/Plus
Query 77 TAATCTGTTCGAAGATGAGCCAATACAG-CCAAAACCAATCTTCAGGAGCTTATCCTA-C 134
||||| | || |||||||| || ||| | || ||||||||| | ||||| || || | |
Sbjct 247 TAATC-GCTCCAAGATGAGTCAGTAC-GATCACAACCAATCTGCGGGAGC-TAACCCACC 303
Query 135 GCCGCCAG-TGTCTACCGGCCCTTATATGA-CACCGCCACCGCTCGGTTACCCGACGAGC 192
||| || | |||||||||| || || | |||| || ||| | ||||||||||||| |
Sbjct 304 GCCACC-GATGTCTACCGGTCC----ATCACCACCACCGCCGATTGGTTACCCGACGAAC 358
Query 193 GACATC-AGTCATGCCACGGTGGCTC--CG----GTGGAGACAAAGTCCAAGGGTGATGG 245
| | | ||||||| |||| |||| | ||||| || ||||| ||||| || ||
Sbjct 359 CA-ACCGAGTCATGGTTCGGTAGCTCAGGGTAAAGTGGAAACCAAGTCTAAGGGCGACGG 417
Query 246 ATTCTTGAAAGGCTGTCTTGCGGCCATGTGTTGCTGTTGTGTCCTCGACGCCTGCTTCT 304
|||||| |||||||||||||||||||||||||||||||||| ||| ||| ||||||||
Sbjct 418 ATTCTTTAAAGGCTGTCTTGCGGCCATGTGTTGCTGTTGTGCCCTGGACATCTGCTTCT 476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18162060364
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5