BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G32200.1 Length=486 Score E Sequences producing significant alignments: (Bits) Value Ahg901031 jgi|Araly1|901031|Al_scaffold_0004_1681 339 2e-92 Ahg482146 jgi|Araly1|482146|fgenesh2_kg.4__1206__AT2G32190.1 263 9e-70 > Ahg901031 jgi|Araly1|901031|Al_scaffold_0004_1681 Length=228 Score = 339 bits (183), Expect = 2e-92 Identities = 213/228 (93%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 67 ATGAGCCAATACAGTCAAAACCAATATGCAGGAGCTTATCCTACGCCGCCAGTGTCTACC 126 |||||||||||||| |||||||||| || |||||||||| | ||||||||||||||||| Sbjct 1 ATGAGCCAATACAGCCAAAACCAATTTGAAGGAGCTTATACAACGCCGCCAGTGTCTACG 60 Query 127 GGTCCATACGTGGCACCGCCACCGCTCGGTTACCCAACGAACGACACGACTCATGCTACG 186 ||||| |||||||||||||||||||||||||||||||||||| |||| |||||||| ||| Sbjct 61 GGTCCCTACGTGGCACCGCCACCGCTCGGTTACCCAACGAACCACACAACTCATGCCACG 120 Query 187 GTGGCTCCTGTCGAGACAAAGTCTAAAGGTGAAGCTGCTGATGGATTCTTGAAAGGCTGT 246 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GTTTCTCCTGTCGAGACAAAGTCTAAAGGTGAAGCTGCTGATGGATTCTTGAAAGGCTGT 180 Query 247 CTTGCGACCATGTTGGCCTGTTGCGTCCTCGACGCATGCATTTTCTGA 294 ||||||||| ||||||||||||||||||| ||||||||||| |||||| Sbjct 181 CTTGCGACCCTGTTGGCCTGTTGCGTCCTTGACGCATGCATCTTCTGA 228 > Ahg482146 jgi|Araly1|482146|fgenesh2_kg.4__1206__AT2G32190.1 Length=453 Score = 263 bits (142), Expect = 9e-70 Identities = 275/335 (82%), Gaps = 26/335 (8%) Strand=Plus/Plus Query 32 TAC-ATTTTCAAAGAAAAATCATAATCTGTTCGAATATGAGCCAATACAGTCAAAACCAA 90 ||| ||||| ||| | ||||||||||| ||||||| |||||||||| ||| ||||||||| Sbjct 29 TACGATTTT-AAA-ACAAATCATAATCCGTTCGAAGATGAGCCAATTCAGCCAAAACCAA 86 Query 91 TATGCAGGAGCTTATCCTACGCCGCCAGTGTCTACCGGTCCATACGTGGCACCGCCACCG 150 | | |||||||||||||||||||||||||||||||||| || ||||||||||| |||||| Sbjct 87 TCTTCAGGAGCTTATCCTACGCCGCCAGTGTCTACCGGCCCTTACGTGGCACCACCACCG 146 Query 151 CTCGGTTACCCAACGAACGACACGACTCATGCTACGGTGGCTCCTGTCGAGACAAAGTCT 210 ||||||||||| ||||| ||||| | |||||| |||||||||| || |||||||| || Sbjct 147 CTCGGTTACCCGACGAATGACACCAGTCATGCCCCGGTGGCTCCGGTGGAGACAAAATCC 206 Query 211 AAAGGTGAAGCTGCTGATGGATTCTTGAAAGGCTGTCTTGCGACCATGT-TGGCCTGTTG 269 || || | || |||||||||||||||||||||||||| |||||| | || ||||| Sbjct 207 AA-GG-G----TG---ATGGATTCTTGAAAGGCTGTCTTGCGGCCATGTGTTGC-TGTTG 256 Query 270 CGTCCTCGACGCATGCATTTTCTGAGTTCGGAGGAAGCAGTCGATTGTTTATTAAATTTG 329 ||||||||||| ||| || |||| |||||||||| | ||| | ||||| | | Sbjct 257 TGTCCTCGACGCCTGC-TT--CTGAATTCGGAGGAATT-G--GATGGGTTATT---T--G 305 Query 330 ACACTTCATGCAAAT-ATTTTTCATTGTATTTTGC 363 | | ||||||||||| |||| || || |||||||| Sbjct 306 ATATTTCATGCAAATTATTTATCCTTTTATTTTGC 340 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17627882118 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5