BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G32200.1

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg901031 jgi|Araly1|901031|Al_scaffold_0004_1681                    339    2e-92
  Ahg482146 jgi|Araly1|482146|fgenesh2_kg.4__1206__AT2G32190.1         263    9e-70


> Ahg901031 jgi|Araly1|901031|Al_scaffold_0004_1681
Length=228

 Score =  339 bits (183),  Expect = 2e-92
 Identities = 213/228 (93%), Gaps = 0/228 (0%)
 Strand=Plus/Plus

Query  67   ATGAGCCAATACAGTCAAAACCAATATGCAGGAGCTTATCCTACGCCGCCAGTGTCTACC  126
            |||||||||||||| |||||||||| || |||||||||| | ||||||||||||||||| 
Sbjct  1    ATGAGCCAATACAGCCAAAACCAATTTGAAGGAGCTTATACAACGCCGCCAGTGTCTACG  60

Query  127  GGTCCATACGTGGCACCGCCACCGCTCGGTTACCCAACGAACGACACGACTCATGCTACG  186
            ||||| |||||||||||||||||||||||||||||||||||| |||| |||||||| |||
Sbjct  61   GGTCCCTACGTGGCACCGCCACCGCTCGGTTACCCAACGAACCACACAACTCATGCCACG  120

Query  187  GTGGCTCCTGTCGAGACAAAGTCTAAAGGTGAAGCTGCTGATGGATTCTTGAAAGGCTGT  246
            ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GTTTCTCCTGTCGAGACAAAGTCTAAAGGTGAAGCTGCTGATGGATTCTTGAAAGGCTGT  180

Query  247  CTTGCGACCATGTTGGCCTGTTGCGTCCTCGACGCATGCATTTTCTGA  294
            ||||||||| ||||||||||||||||||| ||||||||||| ||||||
Sbjct  181  CTTGCGACCCTGTTGGCCTGTTGCGTCCTTGACGCATGCATCTTCTGA  228


> Ahg482146 jgi|Araly1|482146|fgenesh2_kg.4__1206__AT2G32190.1
Length=453

 Score =  263 bits (142),  Expect = 9e-70
 Identities = 275/335 (82%), Gaps = 26/335 (8%)
 Strand=Plus/Plus

Query  32   TAC-ATTTTCAAAGAAAAATCATAATCTGTTCGAATATGAGCCAATACAGTCAAAACCAA  90
            ||| ||||| ||| | ||||||||||| ||||||| |||||||||| ||| |||||||||
Sbjct  29   TACGATTTT-AAA-ACAAATCATAATCCGTTCGAAGATGAGCCAATTCAGCCAAAACCAA  86

Query  91   TATGCAGGAGCTTATCCTACGCCGCCAGTGTCTACCGGTCCATACGTGGCACCGCCACCG  150
            | | |||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct  87   TCTTCAGGAGCTTATCCTACGCCGCCAGTGTCTACCGGCCCTTACGTGGCACCACCACCG  146

Query  151  CTCGGTTACCCAACGAACGACACGACTCATGCTACGGTGGCTCCTGTCGAGACAAAGTCT  210
            ||||||||||| ||||| ||||| | ||||||  |||||||||| || |||||||| || 
Sbjct  147  CTCGGTTACCCGACGAATGACACCAGTCATGCCCCGGTGGCTCCGGTGGAGACAAAATCC  206

Query  211  AAAGGTGAAGCTGCTGATGGATTCTTGAAAGGCTGTCTTGCGACCATGT-TGGCCTGTTG  269
            || || |    ||   |||||||||||||||||||||||||| |||||| | || |||||
Sbjct  207  AA-GG-G----TG---ATGGATTCTTGAAAGGCTGTCTTGCGGCCATGTGTTGC-TGTTG  256

Query  270  CGTCCTCGACGCATGCATTTTCTGAGTTCGGAGGAAGCAGTCGATTGTTTATTAAATTTG  329
             ||||||||||| ||| ||  |||| ||||||||||   |  ||| | |||||   |  |
Sbjct  257  TGTCCTCGACGCCTGC-TT--CTGAATTCGGAGGAATT-G--GATGGGTTATT---T--G  305

Query  330  ACACTTCATGCAAAT-ATTTTTCATTGTATTTTGC  363
            | | ||||||||||| |||| || || ||||||||
Sbjct  306  ATATTTCATGCAAATTATTTATCCTTTTATTTTGC  340



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17627882118


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5