BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G32210.1 Length=583 Score E Sequences producing significant alignments: (Bits) Value Ahg482146 jgi|Araly1|482146|fgenesh2_kg.4__1206__AT2G32190.1 335 2e-91 Ahg933782 jgi|Araly1|933782|scaffold_401770.1 254 7e-67 > Ahg482146 jgi|Araly1|482146|fgenesh2_kg.4__1206__AT2G32190.1 Length=453 Score = 335 bits (181), Expect = 2e-91 Identities = 223/243 (92%), Gaps = 3/243 (1%) Strand=Plus/Plus Query 68 AAATCACAATC-T-ATCTGTTCCAAGATGAGTCAATACAGCCAAAACCAATCTTCAGGAG 125 ||| || |||| | ||| |||| |||||||| |||| ||||||||||||||||||||||| Sbjct 38 AAAACA-AATCATAATCCGTTCGAAGATGAGCCAATTCAGCCAAAACCAATCTTCAGGAG 96 Query 126 CTTATCCTACGCCGCCAGTGTCTACCGGCCCTTACGTGGCACCGCCACCGCTAGGTTACC 185 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 97 CTTATCCTACGCCGCCAGTGTCTACCGGCCCTTACGTGGCACCACCACCGCTCGGTTACC 156 Query 186 CAACGAACGACACAAGTCATGCCACGGTGGCAACGGTGGAGACAAAGTCCAAGGGTGATG 245 | ||||| ||||| ||||||||| ||||||| ||||||||||||| ||||||||||||| Sbjct 157 CGACGAATGACACCAGTCATGCCCCGGTGGCTCCGGTGGAGACAAAATCCAAGGGTGATG 216 Query 246 GATTCTTAAAAGGCTGTCTTGCGGCCATGTGTTGTTGTTGTGTCCTCGACGCATGCTTCT 305 ||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 217 GATTCTTGAAAGGCTGTCTTGCGGCCATGTGTTGCTGTTGTGTCCTCGACGCCTGCTTCT 276 Query 306 GAA 308 ||| Sbjct 277 GAA 279 > Ahg933782 jgi|Araly1|933782|scaffold_401770.1 Length=235 Score = 254 bits (137), Expect = 7e-67 Identities = 208/238 (87%), Gaps = 21/238 (9%) Strand=Plus/Plus Query 85 TTCCAAGATGAGTCAATACAGCCAAAACCAATCTTCAGGAGCTTATCCTACGCCGCCAGT 144 ||| |||||||| |||||||||| || || | || ||||||||||||||| ||||| Sbjct 14 TTCGAAGATGAGCCAATACAGCC--AA--AA-C--CA--AGCTTATCCTACGCCACCAGT 64 Query 145 GTCTACCGGCCCTTACGTGGCACCGCCACCGCTAGGTTACCCAACGAACGACACAAGTCA 204 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 65 GTCTACCGGCCCTTACGTGGCACCACCACCGCTAGGTTACCCAACGAACGACACAAGTCA 124 Query 205 TGCCACGGTGGCAACGGTGGAGACAAAGTCCAAGGGTGATGGATTCTTAAAAGGCTGTCT 264 |||||||||||| ||||||||||||||||||||||||||||| | | | || Sbjct 125 TGCCACGGTGGCTCCGGTGGAGACAAAGTCCAAGGGTGATGGA--C--A------T--CT 172 Query 265 TGCGGCCATGTGTTGTTGTTGTGTCCTCGACGCATGCTTCTGAAGACTTAGATGGTTT 322 ||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||| Sbjct 173 TGCGGCCATGTGTTGTTGTTGTGTCCTCGACGCATGCTTCTGAGGACATCGATGGTTT 230 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21328974251 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5