BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G32210.1

Length=583
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg482146 jgi|Araly1|482146|fgenesh2_kg.4__1206__AT2G32190.1         335    2e-91
  Ahg933782 jgi|Araly1|933782|scaffold_401770.1                        254    7e-67


> Ahg482146 jgi|Araly1|482146|fgenesh2_kg.4__1206__AT2G32190.1
Length=453

 Score =  335 bits (181),  Expect = 2e-91
 Identities = 223/243 (92%), Gaps = 3/243 (1%)
 Strand=Plus/Plus

Query  68   AAATCACAATC-T-ATCTGTTCCAAGATGAGTCAATACAGCCAAAACCAATCTTCAGGAG  125
            ||| || |||| | ||| |||| |||||||| |||| |||||||||||||||||||||||
Sbjct  38   AAAACA-AATCATAATCCGTTCGAAGATGAGCCAATTCAGCCAAAACCAATCTTCAGGAG  96

Query  126  CTTATCCTACGCCGCCAGTGTCTACCGGCCCTTACGTGGCACCGCCACCGCTAGGTTACC  185
            ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct  97   CTTATCCTACGCCGCCAGTGTCTACCGGCCCTTACGTGGCACCACCACCGCTCGGTTACC  156

Query  186  CAACGAACGACACAAGTCATGCCACGGTGGCAACGGTGGAGACAAAGTCCAAGGGTGATG  245
            | ||||| ||||| ||||||||| |||||||  ||||||||||||| |||||||||||||
Sbjct  157  CGACGAATGACACCAGTCATGCCCCGGTGGCTCCGGTGGAGACAAAATCCAAGGGTGATG  216

Query  246  GATTCTTAAAAGGCTGTCTTGCGGCCATGTGTTGTTGTTGTGTCCTCGACGCATGCTTCT  305
            ||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct  217  GATTCTTGAAAGGCTGTCTTGCGGCCATGTGTTGCTGTTGTGTCCTCGACGCCTGCTTCT  276

Query  306  GAA  308
            |||
Sbjct  277  GAA  279


> Ahg933782 jgi|Araly1|933782|scaffold_401770.1
Length=235

 Score =  254 bits (137),  Expect = 7e-67
 Identities = 208/238 (87%), Gaps = 21/238 (9%)
 Strand=Plus/Plus

Query  85   TTCCAAGATGAGTCAATACAGCCAAAACCAATCTTCAGGAGCTTATCCTACGCCGCCAGT  144
            ||| |||||||| ||||||||||  ||  || |  ||  ||||||||||||||| |||||
Sbjct  14   TTCGAAGATGAGCCAATACAGCC--AA--AA-C--CA--AGCTTATCCTACGCCACCAGT  64

Query  145  GTCTACCGGCCCTTACGTGGCACCGCCACCGCTAGGTTACCCAACGAACGACACAAGTCA  204
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  65   GTCTACCGGCCCTTACGTGGCACCACCACCGCTAGGTTACCCAACGAACGACACAAGTCA  124

Query  205  TGCCACGGTGGCAACGGTGGAGACAAAGTCCAAGGGTGATGGATTCTTAAAAGGCTGTCT  264
            ||||||||||||  |||||||||||||||||||||||||||||  |  |      |  ||
Sbjct  125  TGCCACGGTGGCTCCGGTGGAGACAAAGTCCAAGGGTGATGGA--C--A------T--CT  172

Query  265  TGCGGCCATGTGTTGTTGTTGTGTCCTCGACGCATGCTTCTGAAGACTTAGATGGTTT  322
            ||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct  173  TGCGGCCATGTGTTGTTGTTGTGTCCTCGACGCATGCTTCTGAGGACATCGATGGTTT  230



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21328974251


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5