BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G32220.1

Length=605
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg933783 jgi|Araly1|933783|scaffold_401771.1                        627    4e-179


> Ahg933783 jgi|Araly1|933783|scaffold_401771.1
Length=448

 Score =  627 bits (339),  Expect = 4e-179
 Identities = 395/422 (94%), Gaps = 4/422 (1%)
 Strand=Plus/Plus

Query  23   GACAATGGTGAAATGTATGAAGCCAGGAAAAGCCGTGATCCTTTTACAAGGACGATACAC  82
            ||||||||||||||||||||||||||| ||||| ||||||||  ||||||| |||||| |
Sbjct  17   GACAATGGTGAAATGTATGAAGCCAGGGAAAGCTGTGATCCTCCTACAAGGTCGATACGC  76

Query  83   CGGTAAAAAGGCGGTGATCGTGAAATCCTTCGATGACGGTACCGTTGAGAAGAAG-TACG  141
            |||||||||||| |||||||||||||||||||| |||||||||| |||||| | | ||||
Sbjct  77   CGGTAAAAAGGCAGTGATCGTGAAATCCTTCGACGACGGTACCGATGAGAA-ACGCTACG  135

Query  142  GTCACTGTCTCGTCGCCGGATTGAAGAAGTACCCAAGCAAAGTCATTCGCAAGGATTCGG  201
            ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  136  GTCACTGCCTCGTCGCCGGATTGAAGAAGTACCCAAGCAAAGTCATCCGCAAGGATTCGG  195

Query  202  CAAAGAAGACGGCTAAGAAATCGCGCGTGAAATGCTTCTTCAAGGTCATCAATTACCAGC  261
            | |||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||
Sbjct  196  CGAAGAAGACGGCTAAGAAATCGCGCGTGAAATGTTTCTTCAAGTTCGTCAATTACCAGC  255

Query  262  ACGTGATGCCTACGCGCTACACTCTTG-ATTTGGATCTGAAGAACGTTGTCTCCGCCGAC  320
            ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||
Sbjct  256  ACGTGATGCCTACGCGCTACACT-TTGGATTTGGATCTGAAGAACGTTGTCTCCGGCGAC  314

Query  321  GCGATCTCGTCCAAGGATAAGAAAGTGACGGCTCTTAAGGAAGCGAAGGCGAAGTTTGAA  380
            |||||||||||||| |||||||||||||||||||| |||||||||||| || ||||||||
Sbjct  315  GCGATCTCGTCCAATGATAAGAAAGTGACGGCTCTCAAGGAAGCGAAGTCGCAGTTTGAA  374

Query  381  GAGAGGTTTAAGACTGGCAAGAACAGATGGTTCTTCACCAAGCTTAGgttttgaattcta  440
            ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct  375  GAGAGGTTTAAGACTGGGAAGAACAGATGGTTCTTCTCCAAGCTTAGGTTTTGAATTCTA  434

Query  441  ca  442
            ||
Sbjct  435  CA  436



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22111291860


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5