BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32235.1
Length=2156
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482149 jgi|Araly1|482149|fgenesh2_kg.4__1209__AT2G32235.1 1447 0.0
Ahg916176 jgi|Araly1|916176|Al_scaffold_0008_927 183 3e-45
Ahg891321 jgi|Araly1|891321|Al_scaffold_0007_3307 183 3e-45
Ahg930665 jgi|Araly1|930665|scaffold_303122.1 93.5 6e-18
> Ahg482149 jgi|Araly1|482149|fgenesh2_kg.4__1209__AT2G32235.1
Length=921
Score = 1447 bits (783), Expect = 0.0
Identities = 887/935 (95%), Gaps = 16/935 (2%)
Strand=Plus/Plus
Query 958 ATGGCGACGCTAAACATGGCGGAAACCCTAGAAACCCTAATCGCTAATTCCCAAGAAGTT 1017
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1 ATGGCGACGCTAAACATGGCGGAAACCCTAGAAACCCTAATCGCTAGCTCCCAAGAAGCT 60
Query 1018 GATTACTCCTACGATCCCGAAGAAGATGACATTGATCTCTCCCTCCTCCGTCTCAACAGC 1077
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 GATTACTCCTACGATCCCGAAGAAGATGACATTGATCTCTCCCTCCTTCGTCTCAACAGC 120
Query 1078 TTCGGAAACTCCTCTGATCGCCGCCGTGCGAATTCCTCTCCTCCGCAATTCAAATCGTAC 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCGGAAACTCCTCTGATCGCCGCCGTGCGAATTCCTCTCCTCCGCAATTCAAATCGTAC 180
Query 1138 GGATCTTTCGGTTCCTCTTCAACCACCGCAACAACCAGTCCCGTGAAACGTCCATCGCCG 1197
||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 181 GGATCTTTCGGCTCCTCTTCAACCACAGCAACAACCAGCCCCGTGAAACGTCCATCGCCG 240
Query 1198 GAATCGAAGCAAGGTGACGAGCCGAGACGCAAGAAGCTGTTTATTCCGA-GACCTGAGGA 1256
||||||||| ||||||||||||||||||||||||| ||||||||||| | ||||||||||
Sbjct 241 GAATCGAAGGAAGGTGACGAGCCGAGACGCAAGAAACTGTTTATTCC-ACGACCTGAGGA 299
Query 1257 AGAAGAAGACCCGAA-TCTCATGGGATATTCAAAGATTCCGCTTCCTGTGGTTGAATTCA 1315
|||||||||||| || |||||||||||||||||||||||| |||||| ||||||| ||||
Sbjct 300 AGAAGAAGACCC-AAGTCTCATGGGATATTCAAAGATTCCACTTCCTTTGGTTGATTTCA 358
Query 1316 ATCCGACGCAAATCCGTTCTCCTCTTTACAAGCGATCTTTATCCGATACATTTGCTTCGC 1375
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 359 ATCCGACGCAAATCCGTTCTCCTCTTTACAAGCGATCTTTATCGGATACATTTGCTTCGC 418
Query 1376 CCGTTGGATCTACATTCGGGTCGGGTGGGTCGGGTTATACCCGTAACAGCGTCGCTCAAG 1435
|||||||||||||| | || ||||||||||||||| | |||||||||| |||||
Sbjct 419 CCGTTGGATCTACA-T----TC----GGGTCGGGTTATACCAGAAACAGCGTCGGTCAAG 469
Query 1436 AAACATCACCTCCTTCGGGTAATGTCCCTTCTCTCCCGCCACGTCCACGGATGTTCCGGA 1495
|||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 470 AAACATCACCGCCTTCGGGTAATGTCCCTTCTCTCCCACCACGTCCACCAATGTTCCGGA 529
Query 1496 GGTCCGTCTCTGATCTTTCGCCGGCACCGTCCTCCAAGTCTCTTCTTGGATCTTCTCGCT 1555
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 530 GGTCCGTCTCCGATCTTTCGCCGGCACCTTCCTCCAAGTCTCTTCTTGGATCTTCTCGCT 589
Query 1556 CCAATGCAATTCCTGAAGGTGATCTCGCGAATCCAGAAAGCTCTGATGCCAATAAGATGC 1615
||||||||| ||||||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 590 CCAATGCAACTCCTGAAGGTGATCTTGTGACTCCAGAAAGCTCTGATGCCAATAAGATGC 649
Query 1616 TGTATATTATCAAGGATGGAGTTCGTGAATTGGATCAATGGTGTAACAAGCTTCTTAAGT 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 TGTATATTATCAAGGATGGAGTTCGTGAATTGGATCAATGGTGTAACAAGCTTCTTAAGT 709
Query 1676 ACGGTGAAGCAGTCTCCTCTGGCTCTGTGAAACAAGACGACAGTCCTAAGGCAGTAGATG 1735
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 710 ACGGTGAAGCAGTCTCCTCTGGCTCCGTGAAACAAGACGACAGTCCTAAGGCAGAAGATG 769
Query 1736 AGGTAGTACAACAAGAGGAGCAACCAAAAGAGTGCAAAGAAGGTGTGAAGGTCAACAGAC 1795
||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 770 AGGTAGTACAA---GAGGAGCAACCGAAAGAGTGCAAAGAAGGCGTGAAGGTGAACAGAC 826
Query 1796 TCGGTGAGGCCTTTGTGGTTGAGATCAACTGTCCATGTGGAAGAAACTACCAAACTCTCT 1855
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 827 TCGGTGAGGCCTTTGTGGTTGAGATCAACTGTCCATGTGGAAAAAACTACCAAACTCTCT 886
Query 1856 TCTCAGGCCGTGACTGCTACTACAAGCTCTTGTAG 1890
|||||||||||||||||||||||||||||||||||
Sbjct 887 TCTCAGGCCGTGACTGCTACTACAAGCTCTTGTAG 921
> Ahg916176 jgi|Araly1|916176|Al_scaffold_0008_927
Length=996
Score = 183 bits (99), Expect = 3e-45
Identities = 151/175 (86%), Gaps = 7/175 (4%)
Strand=Plus/Minus
Query 1167 AACAACCAGTCCCGTGAAACGTCCATCGCCGGAATCGAAGCAAGGTGACGAGCCGAGACG 1226
||| ||||| |||||||||||||||||||||||||||||| ||| |||||||| |||||
Sbjct 469 AACCACCAGCCCCGTGAAACGTCCATCGCCGGAATCGAAGGAAGCCGACGAGCCTAGACG 410
Query 1227 CAAGAAGCTGTTTATTCCGA-GACCTGAGGAAGAAGAAGACCCGAATCTCATGGGATATT 1285
|||||| |||||| ||| | || ||||||||||||| | | ||||||||| |||||||
Sbjct 409 CAAGAAACTGTTTCTTCA-ACGATCTGAGGAAGAAGACG-C--GAATCTCATCGGATATT 354
Query 1286 CAAAGATTCCGCTTCCTGTGGTTGAATTCAATCCGACGCA-AATCCGTTCTCCTC 1339
| |||||||||||||| ||||| ||||||||||||||| | |||||| ||| |||
Sbjct 353 CGAAGATTCCGCTTCCAGTGGTGGAATTCAATCCGACG-AGAATCCGATCTTCTC 300
Score = 78.7 bits (42), Expect = 2e-13
Identities = 50/54 (93%), Gaps = 0/54 (0%)
Strand=Plus/Minus
Query 1544 GATCTTCTCGCTCCAATGCAATTCCTGAAGGTGATCTCGCGAATCCAGAAAGCT 1597
|||||||||||||||||||||||||||||| ||| || | ||||||||||||||
Sbjct 308 GATCTTCTCGCTCCAATGCAATTCCTGAAGCTGAGCTTGTGAATCCAGAAAGCT 255
> Ahg891321 jgi|Araly1|891321|Al_scaffold_0007_3307
Length=948
Score = 183 bits (99), Expect = 3e-45
Identities = 151/175 (86%), Gaps = 7/175 (4%)
Strand=Plus/Minus
Query 1167 AACAACCAGTCCCGTGAAACGTCCATCGCCGGAATCGAAGCAAGGTGACGAGCCGAGACG 1226
||| ||||| |||||||||||||||||||||||||||||| ||| |||||||| |||||
Sbjct 403 AACCACCAGCCCCGTGAAACGTCCATCGCCGGAATCGAAGGAAGCCGACGAGCCTAGACG 344
Query 1227 CAAGAAGCTGTTTATTCCGA-GACCTGAGGAAGAAGAAGACCCGAATCTCATGGGATATT 1285
|||||| |||||| ||| | || ||||||||||||| | | ||||||||| |||||||
Sbjct 343 CAAGAAACTGTTTCTTCA-ACGATCTGAGGAAGAAGACG-C--GAATCTCATCGGATATT 288
Query 1286 CAAAGATTCCGCTTCCTGTGGTTGAATTCAATCCGACGCA-AATCCGTTCTCCTC 1339
| |||||||||||||| ||||| ||||||||||||||| | |||||| ||| |||
Sbjct 287 CGAAGATTCCGCTTCCAGTGGTGGAATTCAATCCGACG-AGAATCCGATCTTCTC 234
Score = 80.5 bits (43), Expect = 5e-14
Identities = 51/55 (93%), Gaps = 0/55 (0%)
Strand=Plus/Minus
Query 1544 GATCTTCTCGCTCCAATGCAATTCCTGAAGGTGATCTCGCGAATCCAGAAAGCTC 1598
|||||||||||||||||||||||||||||| ||| || | |||||||||||||||
Sbjct 242 GATCTTCTCGCTCCAATGCAATTCCTGAAGCTGAGCTTGTGAATCCAGAAAGCTC 188
> Ahg930665 jgi|Araly1|930665|scaffold_303122.1
Length=340
Score = 93.5 bits (50), Expect = 6e-18
Identities = 63/69 (91%), Gaps = 2/69 (3%)
Strand=Plus/Plus
Query 1544 GATCTTCTCGCTCCAATGCAATTCCTGAAGGTGATCTCGCGAATCCAGAAAGCTCTG-AT 1602
|||||||||||||||||||||||||||||| ||| || | ||||||||||||||||| |
Sbjct 244 GATCTTCTCGCTCCAATGCAATTCCTGAAGCTGAGCTTGTGAATCCAGAAAGCTCTGCA- 302
Query 1603 GCCAATAAG 1611
|||||||||
Sbjct 303 GCCAATAAG 311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81132221850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5