BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32260.1
Length=1528
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482154 jgi|Araly1|482154|fgenesh2_kg.4__1214__AT2G32260.1 2276 0.0
> Ahg482154 jgi|Araly1|482154|fgenesh2_kg.4__1214__AT2G32260.1
Length=1526
Score = 2276 bits (1232), Expect = 0.0
Identities = 1456/1554 (94%), Gaps = 56/1554 (4%)
Strand=Plus/Plus
Query 1 AGAGGATATTCTTCGTCACAAAATTaaaaaaaaaaaGAGTAGGAGAAGAGGGAAGCGACT 60
||||||||||||||||||| || |||||| |||| |||||||||||||||||||||||
Sbjct 1 AGAGGATATTCTTCGTCAC--AA--AAAAAATAAAATAGTAGGAGAAGAGGGAAGCGACT 56
Query 61 AGCACCTTTTGTAGTTTTCCGTTTATTTTCTGTATAAGGCGGGTGATTTCGGCTCCTTCA 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 57 AGCACCTTTTGTAGTTTTCCGTTTATTTTCTCTATAAGGCGGGTGATTTCGGCTCCTTCA 116
Query 121 TCGGA-AATTATGAGCAACGTTATCGGCGATCGCACTGAAGACGGCCTTTCCACCGCCGC 179
||||| || |||||||||||| | ||||||||||| ||||||||||||||||||||||||
Sbjct 117 TCGGAGAA-TATGAGCAACGTCACCGGCGATCGCAATGAAGACGGCCTTTCCACCGCCGC 175
Query 180 TGC-GGCCTCTGGCTCTACGGCTGTCCAGAGTTCTCCTCCCACTGATCGTCCTGTCCGCG 238
||| || ||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 176 TGCAGG-CTCCGGCTCTACGGCGGTCCAGAGTTCCCCTCCCACTGATCGTCCTGTCCGCG 234
Query 239 TCTACGCCGATGGGATCTACGATCTTTTCCACTTTGGTCATGCTCGATCTCTCGAACAAG 298
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 235 TCTACGCCGATGGGATCTACGATCTTTTCCACTTTGGTCACGCTCGATCTCTCGAACAAG 294
Query 299 CCAAATTAGCGTTTCCAAACAACACTTACCTTCTTGTTGGATGTTGCAATGATGAGACTA 358
||||||||| |||||| | ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 295 CCAAATTAGAGTTTCC--A-AACACTTACCTTCTTGTTGGATGTTGCAACGATGATACTA 351
Query 359 CCCATAAGTACAAGGGAAGGACTGTAATGACTGCAGAAGAGCGATATGAATCACTTCGAC 418
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 352 CCCATAAGTACAAGGGAAGGACTGTCATGACTGCAGAAGAGCGATATGAGTCACTTCGAC 411
Query 419 ATTGCAAGTGGGTGGATGAAGTCATCCCTGATGCACCATGGGTGGTCAACCAGGAGTTTC 478
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 412 ATTGCAAGTGGGTGGATGAAGTCATTCCTGATGCACCATGGGTGGTCAACCAAGAGTTTC 471
Query 479 TTGACAAGCACCAGATTGACTATGTTGCCCACGATTCTCTTCCCTATGCTGATTCAAGCG 538
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 472 TTGACAAGCACCATATTGACTATGTAGCCCACGATTCTCTTCCCTATGCTGATTCGAGCG 531
Query 539 GAGCTGGAAAGGATGTCTATGAATTTGTTAAGAAAGTTGGGAGGTTTAAGGAAACACA-G 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 532 GAGCTGGAAAGGATGTCTATGAATTTGTTAAGAAAGTTGGGAGGTTTAAGGAAACA-ATG 590
Query 598 CGAACTGAAGGAATATCGACCTCGGATATAATAATGAGAATAGTGAAAGATTACAATCAG 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 591 CGAACTGAAGGAATATCGACCTCGGATATAATAATGAGAATAGTGAAAGATTACAACCAG 650
Query 658 TATGTCATGCGTAACTTGGATAGAGGATACTCAAGGGAAGATCTTGGAGTTAGCTTTGTC 717
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 651 TATGTCATGCGTAACTTGGATAGAGGATACTCGAGGGAAGATCTCGGAGTTAGCTTTGTC 710
Query 718 AAGGAAAAGAGACTTAGAGTTAATATGAGGCTAAAGAAACTCCAGGAGAGGGTCAAAGAA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 AAGGAAAAGAGACTTAGAGTTAATATGAGGCTAAAGAAACTCCAGGAGAGGGTCAAAGAA 770
Query 778 CAACAAGAAAGAGTGGGAGAAAAGATCCAAACTGTAAAAATGCTGCGCAACGAGTGGGTA 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 CAACAAGAAAGAGTGGGAGAAAAGATCCAAACTGTAAAAATGCTGCGCAACGAGTGGGTA 830
Query 838 GAGAATGCAGATCGATGGGTCGCTGGATTTCTTGAAATATTTGAAGAAGGTTGCCATAAG 897
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 831 GAGAATGCAGATCGATGGGTTGCTGGATTTCTTGAAATATTTGAAGAAGGTTGCCATAAG 890
Query 898 ATGGGAACTGCAATCGTAGACAGTATCCAAGAAAGGTTAATGAGACAAAAGTC-GGCAGA 956
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 891 ATGGGAACTGCAATCGTAGACAGTATCCAAGAAAGGTTAATGAGACAAAAGTCCGG-AGA 949
Query 957 GAGGCTGGAGAACGGTCAGGATGATGACACAGACGACCAGTTCTATGAAGAATACTTCGA 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 GAGGCTGGAGAACGGTCAGGATGATGACACAGACGACCAGTTCTATGAAGAATACTTCGA 1009
Query 1017 TCATGACATGGGTAGTGACGATGATGAAGATGAAAAATTCTACGACGAGGAAGAAGTAAA 1076
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1010 CCATGACATGGGTAGTGACGAGGATGAAGATGAAAAATTCTACGACGAGGAAGAAATAAA 1069
Query 1077 GGAAGAAGAGACAGAG-AAAACTGTTATGACGGATGCTAAAGACAACAAGTAAGAACAAA 1135
||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1070 GGAAGAAGAGAAAGAGCAAAAC-GTTATGACGGATGCTAAAGACAACAAGTAAGAACAAA 1128
Query 1136 TTTGGCTTGCAGAAACCTCAGATTAGCTCTACTTATGGCCACTTCTACTAAACTCCCTTA 1195
|| ||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1129 TTCGGCTTGCAG-----TCAG-----CTCTACTTATGGCCACTTCTACTAAACTCCCTTA 1178
Query 1196 AGCCTCGC--ACTCTCTCT---C--G--AAATTCATCTACTTAACATATAATACCAATGT 1246
||||| | ||||||||| | | |||| |||||||||||||||||||| ||||||
Sbjct 1179 -GCCTCTCTCACTCTCTCTTGACCAGTGAAATGCATCTACTTAACATATAATATCAATGT 1237
Query 1247 TTAGAA-AGAGAGAgtgtgtgatgtgtt-tgtttgtgtg--tgtTGAACAAACGAACGTG 1302
|||||| |||||||| ||||| |||| | ||| |||| | |||||||||||||||||||
Sbjct 1238 TTAGAAGAGAGAGAGAGTGTG-TGTGATGTGTGTGTGCGCGTGTTGAACAAACGAACGTG 1296
Query 1303 CGTGGTTGTCTTTGGTGAGTTGGTCTCATCTTTGTTGATTTTTGAATGCGCATGTAtttt 1362
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1297 CGTGGTTGTCTTTGGTGAGTTGGTCTCATCTTTGTTGATTTTTGAATACGCATGTATTTT 1356
Query 1363 ttt--CTTCTTTTTCATGACGGGCAAAGTGTTATGAAGTA-CAATGCAATTGTCTAAAAC 1419
||| ||||||||| ||||| ||||||||||||||||||| ||||||||||||||||| |
Sbjct 1357 TTTTTCTTCTTTTT-ATGACAGGCAAAGTGTTATGAAGTAACAATGCAATTGTCTAAA-C 1414
Query 1420 AGGATAAGTCAATGGTTCGTGTGTGCCATAAAGTAAACATCGCT-GTGT--A--CATCTT 1474
|||||||||||||| |||||||||||||||||||||||||| || || | | ||||||
Sbjct 1415 AGGATAAGTCAATGATTCGTGTGTGCCATAAAGTAAACATC-CTTGTATTCATTCATCTT 1473
Query 1475 CCATGTTCCAAACTCAA-CTCGTTTTCTTCAAATA-TTGAAATACAAATTGGTC 1526
||||| ||||| ||||| ||||||||||||||| | ||||||||||||||||||
Sbjct 1474 CCATGCTCCAA-CTCAAACTCGTTTTCTTCAAAAAATTGAAATACAAATTGGTC 1526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57211547990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5