BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32270.1
Length=1325
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320968 jgi|Araly1|320968|fgenesh1_pm.C_scaffold_4001025 1568 0.0
Ahg470527 jgi|Araly1|470527|fgenesh2_kg.1__481__AT1G05300.1 394 9e-109
> Ahg320968 jgi|Araly1|320968|fgenesh1_pm.C_scaffold_4001025
Length=1044
Score = 1568 bits (849), Expect = 0.0
Identities = 952/1003 (95%), Gaps = 2/1003 (0%)
Strand=Plus/Plus
Query 76 AAACTCTTATTCTTCTTCTTCTCCGTCTCCCTCCTTCTCATCGCCGTCGTCAACGCCGCC 135
||||||||| |||||||||||||| |||||||||||||||| || ||||||||||| ||
Sbjct 43 AAACTCTTACTCTTCTTCTTCTCCATCTCCCTCCTTCTCATTGCGGTCGTCAACGCGGCA 102
Query 136 GAAGGCCATTCACATGGTGGACCAAAATGTGAATGCTCACACGAAGACGACCATGAAAAC 195
||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||
Sbjct 103 GAAGGCCATTCACATGGTGGACCGAAATGTGAATGCTCACACAAAGATGACCATGAAAAC 162
Query 196 AAAGCCGGAGCTCGGAAATACAAGATCGCCGCAATTCCTACAGTTCTAATAGCCGGCATA 255
||||| |||||||||||||||||||||||||| |||||||| |||||| | ||||| |||
Sbjct 163 AAAGCGGGAGCTCGGAAATACAAGATCGCCGCCATTCCTACCGTTCTAGTCGCCGGTATA 222
Query 256 ATCGGAGTTCTTTTCCCTTTGTTAGGCAAAGTCTTCCCTTCTTTGCGTCCAGAAACATGT 315
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 223 ATCGGAGTTCTTTTCCCTTTGTTAGGCAAAGTCTTCCCTTCTTTGGGTCCAGAAACATCT 282
Query 316 TTCTTCTTCGTCACGAAAGCTTTCGCAGCCGGAGTTAT-CTTGGCTACCGGATTTATGCA 374
|||||||| ||||||||||||||||| ||||||||||| ||| |||||||||||||||||
Sbjct 283 TTCTTCTTTGTCACGAAAGCTTTCGCGGCCGGAGTTATCCTT-GCTACCGGATTTATGCA 341
Query 375 TGTCTTGCCTGAGGCTTACGAGATGCTTAACTCTCCATGTTTGACATCTGAAGCATGGGA 434
||||||||||||||||||||||||||||| ||| || ||| |||||||||||||||||||
Sbjct 342 TGTCTTGCCTGAGGCTTACGAGATGCTTACCTCGCCGTGTCTGACATCTGAAGCATGGGA 401
Query 435 ATTTCCGTTCACCGGATTTATTGCGATGATTGCTGCGATCTTGACGTTATCCGTTGATAC 494
|||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||
Sbjct 402 ATTTCCGTTCACCGGATTTATTGCAATGATTGCTGCGATCCTGACGCTATCCGTTGATAC 461
Query 495 ATTTGCCACTTCGAGTTTCTATAAATCGCATTGCAAAGCGTCTAAGAGGGTCAGTGATGG 554
||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 462 ATTTGCCACTTCGAGTTTCTATAAATCACATTGCAACGCGTCGAAGAGGGTCAGTGATGG 521
Query 555 AGAAACCGGCGAGTCCTCCGTTGACTCCGAGAAGGTCCAAATTCTCCGGACTAGAGTTAT 614
|||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 522 AGAATCCGGCGAGACCTCCGTGGACTCCGAGAAGGTCCAAATTCTCCGGACTAGAATTAT 581
Query 615 TGCACAGGTATTGGAGTTGGGAATAATAGTACACTCAGTGGTAATAGGAATATCACTAGG 674
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 582 TGCACAGGTATTGGAGTTGGGCATAATAGTACACTCAGTGGTAATAGGAATATCACTTGG 641
Query 675 AGCTTCACAGAGCCCAGATGCTGCAAAAGCTCTGTTTATTGCCTTAATGTTTCATCAATG 734
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 642 AGCTTCACAGAGCCCAGATGCTGCAAAAGCTCTCTTTATTGCCTTAATGTTTCATCAATG 701
Query 735 CTTCGAAGGTCTAGGCCTTGGTGGTTGTATTGCTCAGGGAAAATTCAAGTGTTTGTCAGT 794
||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 702 CTTTGAAGGGCTTGGCCTTGGTGGTTGTATTGCTCAGGGAAAATTCAAGTGTTTGTCGGT 761
Query 795 AACAATCATGTCGACGTTCTTCGCAATAACGACACCGATAGGAATCGTTGTGGGAATGGG 854
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 762 AACAATAATGTCGACGTTCTTCGCAATAACGACACCAATAGGAATCGTTGTGGGAATGGG 821
Query 855 AATAGCAAATTCTTACGATGAGTCTTCACCAACGGCTCTGATCGTTCAAGGAGTTTTGAA 914
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 822 AATAGCAAATTCTTACGATGAGTCTTCACCAACGGCTCTGATCGTGCAAGGAGTTTTGAA 881
Query 915 CGCTGCATCCGCAGGCATTCTCATCTACATGTCTTTGGTTGACCTTCTCGCAGCAGATTT 974
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 882 CGCTGCATCCGCAGGCATTCTCATCTACATGTCTCTGGTGGACCTTCTCGCAGCAGATTT 941
Query 975 CACGCACCCTAAAATGCAATCCAATACTGGGCTTCAAATTATGGCCCATATTGCTCTCCT 1034
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 942 CATGCACCCTAAAATGCAATCCAATACTGGGCTTCAAATCATGGCCCATATTGCTCTCCT 1001
Query 1035 TCTTGGTGCTGGCCTCATGTCTCTATTGGCTAAATGGGCTTGA 1077
||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1002 TCTTGGTGCTGCCCTCATGTCTCTGTTGGCTAAATGGGCTTGA 1044
> Ahg470527 jgi|Araly1|470527|fgenesh2_kg.1__481__AT1G05300.1
Length=1138
Score = 394 bits (213), Expect = 9e-109
Identities = 396/485 (82%), Gaps = 10/485 (2%)
Strand=Plus/Plus
Query 596 TTCTCCGGACTAGAGTTATTGCACAGGTATTGG-AGTTGGGAATAATAGTACACTCAGTG 654
||| ||||||| ||||| | |||||||| |||| || |||||||||||||||||||||||
Sbjct 639 TTCACCGGACTCGAGTTGTGGCACAGGTGTTGGAAG-TGGGAATAATAGTACACTCAGTG 697
Query 655 GTAATAGGAATATCACTAGGAGCTTCACAGAGCCCAGATGCTGCAAAAGCTCTGTTTATT 714
||||||||||||||||| ||||| ||||| || ||||| |||| |||||||| ||| |
Sbjct 698 GTAATAGGAATATCACTGGGAGCATCACAAAGTCCAGACACTGCCAAAGCTCTCTTTGCT 757
Query 715 GCCTTAATGTTTCATCAATGCTTCGAAGGTCTAGGCCTTGGTGGTTGTATTGCTCAGGGA 774
|| |||||||||||||||||||||||||| || || ||||||||||| || || ||||||
Sbjct 758 GCTTTAATGTTTCATCAATGCTTCGAAGGACTTGGTCTTGGTGGTTGCATCGCCCAGGGA 817
Query 775 AAATTCAAGTGTT-TGTCAGTAACAATCATGTCGA-CGTTCTTCGCAATAACGACACCGA 832
|| ||||| | || ||||| | ||||| ||||||| | || ||| | ||||||| |||
Sbjct 818 AATTTCAATT-TTATGTCAATTACAATAATGTCGATCTTT-TTCTCTGTAACGACGCCGG 875
Query 833 TAGGAATCGTTGTGGGAATGGGAATAGCAAATTCTTACGATGAGTCTTCACCAACGGCTC 892
| ||||||| || ||||||| ||| ||| ||||| | ||||| ||||||||||
Sbjct 876 TCGGAATCGCGGTCGGAATGGCAATTTCAAGCTCTTATAACGAGTCGAGTCCAACGGCTC 935
Query 893 TGATCGTTCAAGGAGTT-TTGAACGCTGCATCCGCAGGCATTCTCATCTACATGTCTTTG 951
||||||| |||||||| || || |||||||| |||||||| |||||||| |||||| |
Sbjct 936 TGATCGTCCAAGGAGTCCTT-AATGCTGCATCTGCAGGCATCCTCATCTATATGTCTCTA 994
Query 952 GTTGACCTTCTCGCAGCAGATTTCACGCACCCTAAAATGCAATCCAATACTGGGCTTCAA 1011
|| ||| |||||||||||||||| | ||||||||| |||||| || ||| | ||||||
Sbjct 995 GTAGACTTTCTCGCAGCAGATTTTATGCACCCTAAGATGCAAAAAAACACTAGACTTCAA 1054
Query 1012 ATTATGGCCCATAT-TGCTCTCCTTCTTGGTGCTGGCCTCATGTCTCTATTGGCTAAATG 1070
|| ||||||||||| | |||| ||| |||| || || | ||||| || || ||||||||
Sbjct 1055 ATCATGGCCCATATCT-CTCTTCTTGTTGGAGCAGGGATTATGTCACTTTTAGCTAAATG 1113
Query 1071 GGCTT 1075
|||||
Sbjct 1114 GGCTT 1118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49559792100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5