BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G32275.1

Length=638
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg933791 jgi|Araly1|933791|scaffold_401779.1                        228    5e-59


> Ahg933791 jgi|Araly1|933791|scaffold_401779.1
Length=308

 Score =  228 bits (123),  Expect = 5e-59
 Identities = 259/317 (82%), Gaps = 40/317 (13%)
 Strand=Plus/Plus

Query  65   TTTTAAGTAGTCGAGTTTCAAATGATTTTTTCTCTATTCCGTCGATGTTGCCGTTCCACC  124
            ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  1    TTTTAAGTAATCGAGTTTCAAATGATTTTTTCTCTATTTCGTCGATGTTGCCGTTCCACC  60

Query  125  TCCGCTGTGATTGACGAGCCATCGCTAGGCCATGACTCAAGTGTCTCAGGTGACTCAGTT  184
            ||||| ||      | ||||| || | ||   || |  |  |||||||||||||||||||
Sbjct  61   TCCGCCGTC-----C-AGCCAACGGT-GG---TG-C--A--TGTCTCAGGTGACTCAGTT  105

Query  185  CG-CTCA-GATGTCTCAGTTGACTCAGGTGTCTCAACTGACTCAGGTGACTCAGCAGCGC  242
             | |||| | || ||||||||||||||||||||||   |  |||     |||||||| ||
Sbjct  106  -GTCTCAAG-TGACTCAGTTGACTCAGGTGTCTCAG--G--TCA-----CTCAGCAGAGC  154

Query  243  CTACACGGTGGAGTCCGTCTTTACCTCCGATATTGGAAGGTGACGAAACCGAGAGTGACC  302
            ||| ||| ||||| |||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct  155  CTAAACGCTGGAGGCCGTCTTTACCTCCAATATTGGAAGGTGACGAAACCGAGAGAGACC  214

Query  303  ACCAAAA---C-------T--CGAGAGTCTCACATGCTTGGTGGTTAAACAAATTACTGA  350
            |||||||   |       |  ||||||||||||||||||||| ||||||| |||||||||
Sbjct  215  ACCAAAATGACCACCAAATTGCGAGAGTCTCACATGCTTGGTCGTTAAACCAATTACTGA  274

Query  351  AGAGATTCCGATGATTT  367
            |||||||| ||| ||||
Sbjct  275  AGAGATTCAGATAATTT  291



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23369348121


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5