BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32280.1
Length=900
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482157 jgi|Araly1|482157|fgenesh2_kg.4__1217__AT2G32280.1 1279 0.0
> Ahg482157 jgi|Araly1|482157|fgenesh2_kg.4__1217__AT2G32280.1
Length=873
Score = 1279 bits (692), Expect = 0.0
Identities = 831/893 (93%), Gaps = 29/893 (3%)
Strand=Plus/Plus
Query 17 AGACTTTCCACTACCCATTCTCATTCTCTCTTCAACTAATATTCTTCCCCGGCCCTCATA 76
||||||| |||||||||||||||| | |||||||||||| |||| | | |||||| |
Sbjct 1 AGACTTTTCACTACCCATTCTCATCCCCTCTTCAACTAACATTC-T---C-TCCCTCAGA 55
Query 77 AAGAAGCTTCTCCTGTTCTTTATTCACATTTTCCAAAATTGTATCTTCTTAAAGTATCTC 136
||||||||||| | | || || | | |||| |||| | |||| ||||||||||
Sbjct 56 AAGAAGCTTCT-C----C-TT-TT--C----T-CAAAGTTGTTTGTTCTCAAAGTATCTC 101
Query 137 CAACAAAACTAAATCC--TACTAAGTTAAGAGATTTGAAAATGACAAAGATAGGAGGTAT 194
| |||||||| ||||| || | ||| ||||||||| |||||||||||||||||||||||
Sbjct 102 CTACAAAACTTAATCCTATAGTTAGTGAAGAGATTTTAAAATGACAAAGATAGGAGGTAT 161
Query 195 TCTTGTTTGTCTAGTCATTGTGGGCTTAGATGTAGCTGCTGCAATCCTCGGAATCCAAGC 254
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 162 TCTTGTTTGTTTAGTCATTGTGGGCTTAGATGTAGCAGCTGCAATCCTCGGAATCCAAGC 221
Query 255 TGAAGTCGCCCAAAATCAGGTGAAGCACATGAGGCTTTGGTTATTTGAGTGCAGAGAGCC 314
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 TGAAGTCGCCCAAAACCAGGTGAAGCACATGAGGCTTTGGTTATTTGAGTGCAGAGAGCC 281
Query 315 GAGCCAGGACGCGTTCAGGCTCGGTCTAGGTGCAGCCGCGATATTGGTAATGGCTCATGT 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 GAGCCAGGACGCGTTCAGGCTCGGTCTAGGTGCAGCCGCGATATTGGTAATGGCTCATGT 341
Query 375 CCTACTTAACTTGGTCGGAGGCTGTCTTTGTATTTGCTCTCAAGACGAGTTTCAAAGATC 434
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 CCTACTAAACTTGGTCGGAGGCTGTCTTTGTATTTGCTCTCAAGACGAGTTTCAAAGATC 401
Query 435 TTCTTCCACTAGACAAATCTCCATGGCTTGTCTTGTCCTCACTTGGATCGTATTCGCTGT 494
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 402 TTCTTCCACTAGACAAATCTCCATGGCTTGTCTCGTCCTCACTTGGATCGTATTCGCCGT 461
Query 495 TGGATTTGGGAGTATAGTGATTGGGACGATGTCGAACAGTAAGTCAAGATCCTCTTGTGG 554
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 462 TGGATTCGGGAGTATAGTGATCGGGACGATGTCGAACAGTAAGTCAAGATCCTCTTGTGG 521
Query 555 ATTCACACATCACCATTTTCTCTCCATTGGAGGGATTTTGTGTTTTCTTCATGCCCTCTT 614
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 ATTCACACATCACCACTTTCTCTCCATTGGAGGGATTTTGTGTTTTCTTCATGCCCTCTT 581
Query 615 CTGTGTTGCTTATTACGTTTCTGCCACTGCGGCCAAAGATGAAGCTAAGTGACAAAGTGT 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 CTGTGTTGCTTATTACGTTTCTGCCACTGCGGCCAAAGATGAAGCTAAGTGACAAAGTGT 641
Query 675 CACGGTTAATGATGGAACAGGTAGGTCCTTGTTCTTGACTATATTTATGTATAATCATA- 733
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 642 CACGGTTAATGATGGAACAGGTAGGTCCTTGTCCTTGACAATATTTATGTATAATCATAC 701
Query 734 TA-A-CCTAGTTTCAATTTATTTCTTCTTATGAATCGTTTCACTTATTTCGAAGTCACTT 791
|| | ||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 702 TATAACCTAGTTTCAATTTATTTCTTTTTCTGAATCGTTTCACTTATTTCGAAGTCACTT 761
Query 792 TTGTAATTTTGAAA-GCTGTGTCATTTTGA-AAAAT-A-TGGAAAAGCTTTTATGTCACG 847
||||||||| |||| || |||||||||||| |||| | |||||||||||||||||||||
Sbjct 762 TTGTAATTT-GAAAAGCCGTGTCATTTTGAGAAAAACAATGGAAAAGCTTTTATGTCACG 820
Query 848 CTCTGTTGTCGCATGTGGGGTTAAAATGCACTAGTGATAATGACATTCGGTGG 900
|||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 821 CTCTGTTGTCGCATGTGGGGTTAAAATGCACTAGTGATAATGACGTTTGGTGG 873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33357552375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5