BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32290.1
Length=1853
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482158 jgi|Araly1|482158|fgenesh2_kg.4__1218__AT2G32290.1 2771 0.0
> Ahg482158 jgi|Araly1|482158|fgenesh2_kg.4__1218__AT2G32290.1
Length=1795
Score = 2771 bits (1500), Expect = 0.0
Identities = 1676/1762 (95%), Gaps = 8/1762 (0%)
Strand=Plus/Plus
Query 1 AGTTCCGTCAAGTGCAAGGTACCATGACAAGCGTATTAGGAATGATGAACCCTAATCTGA 60
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 AGTTCCGTCAAGCGCAAGGTACCATGACAAGCGTATTAGGAGTGATGAACCCTAATCTGA 60
Query 61 TCAACGGAAGAAATCTCCACAAAGGATCTTCAATTTTTG-TACAAGATAAAGAAACT-AA 118
|||||||||||||||||||||||||||||| |||||||| || ||| | |||||| | ||
Sbjct 61 TCAACGGAAGAAATCTCCACAAAGGATCTTTAATTTTTGTTA-AAGTTGAAGAAA-TAAA 118
Query 119 AAAACGAGTCCAATGGAGATTATCAATCAAGGAGGGATCTCTAAGAACGCATCAAGCCAC 178
|||||||| |||||||||||| |||||||||||| |||| ||||||||| |||||||||
Sbjct 119 AAAACGAGGCCAATGGAGATTCTCAATCAAGGAGAAATCTTTAAGAACGCCTCAAGCCAC 178
Query 179 TGCTTCTTCTGCAACAGAACCAAAGGCGACAGAGTTCAATACGACGACGTATGAAGACAA 238
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 179 TGCTTCTTCTACAACAGAACCAAAGACGACAGAGTTCAATACGACGACGTATGAAAACAA 238
Query 239 AATGTTGACCAACTATGTTCCTGTCTACGTCATGCTTCAGCTTGGAGTCATCACGAACGA 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AATGTTGACCAACTATGTTCCTGTCTACGTCATGCTTCAGCTTGGAGTCATCACGAACGA 298
Query 299 TAACGTTCTTGAAAACGAAGAGAGTCTCAAGAAACAGCTCAAGAAACTGAAACAAAGTCA 358
||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||
Sbjct 299 TAACGTTCTTGAAAACGAAGAGAATCTCAAGAGACAGCTCAAGAAACTGAAACAGAGTCA 358
Query 359 AGTAGATGGAGTGATGGTTGACGTATGGTGGGGAATCGTTGAATCAAAAGGTCCAAAGCA 418
||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 359 AGTAGATGGAGTGATGGTTGATGTTTGGTGGGGAATCGTTGAATCAAAAGGTCCAAACCA 418
Query 419 ATATCAATGGAGTGCTTATAGAAACTTGTTTGCGATCGTACAAAGCTTTGGACTAAAGTT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 419 ATATCAATGGAGTGCTTATAGAAACTTGTTTGCGATCGTACAAAGCTTTGGACTAAAATT 478
Query 479 ACAAGCTATAATGTCGTTTCATAGATGTGGAGGCAACATAGGAGACGATGTCAACATCCC 538
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 479 ACAAGCTATAATGTCGTTTCATAGATGTGGAGGCAACATAGGAGACGATGTTAACATCCC 538
Query 539 GATACCGAAATGGGTACTCGAAATCGGGGATTCGAATCCGGATATCTTCTATACGAACAA 598
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 539 GATACCGAAATGGGTGCTCGAAATCGGGGATTCGAATCCCGATATCTTCTATACGAACAA 598
Query 599 GAGTGGTAATAGAAACAAAGAGTGTTTGTCTCTCTCTGTAGATAACTTGTCTCTCTTCAG 658
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 599 GAGTGGTAATAGAAACAAAGAGTGTTTGTCTCTCTCTGTAGATAACTTGCCTCTTTTCAG 658
Query 659 AGGACGAACAGCTGTTGAGATGTATAGAGACTACATGAAGAGCTTTAGAGAGAACATGGA 718
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 659 AGGAAGAACAGCTGTTGAGATGTGCAGAGACTACATGAAGAGCTTTAGAGAGAACATGGA 718
Query 719 AGATTTCAT-AAGCTCTGGAGTTATAATAGACATTGAAGTAGGGCTTGGTCCTGCTGGAG 777
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AGATTTCATTAA-CTCTGGAGTTATAATAGACATTGAAGTAGGGCTTGGTCCTGCTGGAG 777
Query 778 AGCTTAGATATCCTTCTTACAGTGAGACTCAAGGATGGGTTTTTCCAGGAATTGGGGAAT 837
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 778 AGCTTAGGTATCCTTCTTACAGCGAGACTCAAGGATGGGTTTTTCCAGGAATTGGGGAAT 837
Query 838 TTCAATGTTATGACAAGTATCTAAGATCAGACTATGAAGAAGAAGTTAGAAGAATCGGGC 897
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 838 TTCAATGTTATGACAAGTATCTAAGATCAGACTATGAAGAAGAAGTTAGAAGGATCGGAC 897
Query 898 ATCCAGAGTGGAAACTTCCGGAAAACGCAGGCGAATACAACAGTGTTCCAGGAGAAACAG 957
||||||||||||||||||||||||| ||||| |||||||||| |||||||| ||| || |
Sbjct 898 ATCCAGAGTGGAAACTTCCGGAAAATGCAGGTGAATACAACAATGTTCCAGAAGAGACCG 957
Query 958 AGTTTTTCGAGTACTCGAATGGGACTTACCTTAAGGAAGAAGGAAATTTCTTCTTGTCAT 1017
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 958 AGTTTTTCGAGTACTCGAATGGGACTTACCTTAAGGAAGAAGGAAAGTTCTTCTTGTCAT 1017
Query 1018 GGTACTCCAAAAAGTTACTTCTCCATGGTGATCAGATTCTTGATGAAGCTAATAAAGTAT 1077
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1018 GGTACTCCAGAAAGTTACGTCTCCATGGTGATCAGATTCTTGATGAAGCTAATAAAGTGT 1077
Query 1078 TTCTCGGGTGTAAACTCAAGATAGCAGCAAAAGTCTCTGGAATCCATTGGTGGTACAAAA 1137
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TTCTTGGGTGTAAACTCAAGATAGCAGCAAAAGTCTCTGGAATCCATTGGTGGTACAAAA 1137
Query 1138 CTGAAAGTCATGCTGCAGAACTTACGGCGGGTTATTACAATCTCAAAAACAGAGATGGTT 1197
||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||| |
Sbjct 1138 CTGAAAGTCATGCTGCAGAACTTACCGCAGGTTATTACAATCTCAAAACCAGAGATGGGT 1197
Query 1198 ATCGTGCGATTGCGAAAATAATGCGTAGACATCACGCTATCTTGAATTTCACTTGTCTAG 1257
||||||||||||||||||| ||| |||||||||| || ||||| ||||||||||||||||
Sbjct 1198 ATCGTGCGATTGCGAAAATGATGGGTAGACATCATGCCATCTTAAATTTCACTTGTCTAG 1257
Query 1258 AGATGAAAAACACAGAGCAACCAGCAAAAGCTAAGAGTGGACCTCAAGAACTTGTTCAAC 1317
||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1258 AGATGAAGAACACAGAGCAGCCAGCAAAAGCTAAGAGTGGACCACAAGAACTTGTTCAAC 1317
Query 1318 AAGTTTTGAGCTCTGGATGGAGAGAAGGGATTGAAGTTGCGGGCGAAAACGCGCTTCCAA 1377
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1318 AAGTTTTGAGCTCTGGATGGAGAGAAGGGATTGAAGTTGCGGGCGAAAACGCCCTTCCGA 1377
Query 1378 GATTCGATAGAAATGGATATAACCAGATCATACTAAACGCAAGGCCTAATGG-AGTTAAC 1436
|||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||
Sbjct 1378 GATTCGATAGAAATGGATATAACCAGATAATACTAAACGCAAGGCCTAATGGGA-TTAAC 1436
Query 1437 CAAGATGGTAAACCGAGGATGTTTGGGTTCACATATCTCAGACTGTCTGATAAACTTCTC 1496
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1437 CAAGATGGTAAACCGAGGATGTTTGGGTTCACATATCTCAGGCTATCTGATAAACTTCTC 1496
Query 1497 AATGAACCAAATTTCTCAACGTTTAAAATGTTCTTGAAACGAATGCATGCGAACCAAGAG 1556
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 CGCGAACCGAATTTCTCAAGGTTTAAAATGTTCTTGAAACGAATGCATGCGAACCAAGAG 1556
Query 1557 TATTGTTCAGAGCCTGAAAGGTATAATCACGAGCTGCTTCCGTTGGAAAGATCGAGAAAC 1616
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1557 TATTGTTCAGAGCCTGAAAGGTATAATCACGAGCTGTTTCCTTTGGAAAGATCGAGAAAC 1616
Query 1617 GATGAATCCTTGGAGATGTTTATGGAAGAAACAGAACCATTTGATCCATTTCCATGGCTG 1676
|||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1617 GATGAATCATTGGAGAAGTTTATGGAAGAAACAGAACCAGTTGATCCATTTCCATGGCTG 1676
Query 1677 GACGAGACAGACATGAGTATTAGACCCTTTGAGAGTGTACTGTCTCTATTGCGAAGCACA 1736
|| |||||||| |||||||||||||| ||||||||| ||||||||||||||| |||||||
Sbjct 1677 GAAGAGACAGATATGAGTATTAGACCGTTTGAGAGTATACTGTCTCTATTGCAAAGCACA 1736
Query 1737 TTTTTGAGAAAGAAGTCCTAGA 1758
|| ||||| |||||||||||||
Sbjct 1737 TTCTTGAGGAAGAAGTCCTAGA 1758
Score = 69.4 bits (37), Expect = 9e-11
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 1817 ATTTGAGATAAATATATAAAAGTAAATAATTCATCCT 1853
|||||||||||||||||||||||||||||||||||||
Sbjct 1759 ATTTGAGATAAATATATAAAAGTAAATAATTCATCCT 1795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69590877615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5