BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G32295.1 Length=1714 Score E Sequences producing significant alignments: (Bits) Value Ahg482159 jgi|Araly1|482159|fgenesh2_kg.4__1219__AT2G32295.1 1805 0.0 > Ahg482159 jgi|Araly1|482159|fgenesh2_kg.4__1219__AT2G32295.1 Length=1486 Score = 1805 bits (977), Expect = 0.0 Identities = 1056/1094 (97%), Gaps = 6/1094 (1%) Strand=Plus/Plus Query 613 GTGGTTTTGTATTTCTCAGCTGTGATTATTCTGATAATCCCTTTCAATATCTTCTACATG 672 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 394 GTGGTTTTGTATTTCTCAGCTGTGATTATTCTGATAATCCCTTTCGATATCTTCTACATG 453 Query 673 TCGTCTCGCTACTATTTGCTTTGGACTTTTTGGCGAATACTCTTCCCTGTGCATGCAGTG 732 |||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 454 CCGTCTCGCTACTGTTTGCTTTGGACTTTTTGGCGAATACTCTTCCCGGTGCAGGCAGTG 513 Query 733 ACTTTTTCAGACTTCTTTCTAGCTGATATCCTGACTTCAATGTCAAAGGTTTTGTCGGAT 792 |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 514 ACTTTTTCGGACTTCTTTCTAGCTGATATCCTGACTTCAATGTCAAAGGTTTTATCGGAT 573 Query 793 TTAGAACGTTCAGTATGTCGTATGGTCCATCGACAGGTGGCTACTGTTGCATGGTTTGAA 852 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 574 TTAGAACGTTCAGTATGTCGTATGGTCCATCGACAGGTGGCTACTGTTGCATGGTTTGAA 633 Query 853 GCTGATTCGGTTTGCGGGAGTCATTCTGCTGCAATTCCCTTGGTTCTTGTTCTACCTTAT 912 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 634 GCCGATTCGGTTTGCGGGAGTCATTCTGCTGCAATTCCCTTGGTTCTTGTTCTACCTTAT 693 Query 913 CTTTTCCGGCTGTTCCAATGCATTCGTCAGTACAAAGATAGCAAGGACATTGCAAACATC 972 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 694 CTTTTCCGGCTGTTCCAATGCATTCGTCAGTATAAAGATAGCAAGGACATTGCAAACATC 753 Query 973 TACAATGCTGGGAAGTATTTAACAGCGGTGCCTGTCATCTTTCTCTCAGCCCTCAAGTAT 1032 |||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 754 TACAATGCTGGGAAATATTTAACGGCGGTGCCTGTCATCTTTCTTTCAGCCCTCAAGTAT 813 Query 1033 TATATCGATCCAGATACATGGACT-TACTCCATACAGCCGGCATGGATCCTCTCTGGTCT 1091 | |||||||||||||||||||| | |||||||| |||||||||||||||||| ||||||| Sbjct 814 TTTATCGATCCAGATACATGGA-TGTACTCCATTCAGCCGGCATGGATCCTCGCTGGTCT 872 Query 1092 AGCTAACACTTTCTTCTCCTTCTTTTGGGATATATTACGCGATTGGGATCTAAGTGTCTT 1151 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 873 AGCTAACACTTTCTTCTCCTTCTTTTGGGATATATTACGCGATTGGGATCTAAGTGTCTT 932 Query 1152 CACTCGGATTTTCAAATTCACCAGACCAAATCTTTTCTCCCATCTACTATATGGACGCCG 1211 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 933 CACTCGGATTTTCAAATTCAGCAGACCAAATCTTTTCTCCCATCTACTATATGGACGCCG 992 Query 1212 TTGGGTATATGTTTGGGTAATCGGAAGCAATCTGGTACTAAGGTGGACATGGACATATAA 1271 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 993 TTGGGTATATGTTTGGGTAATCGGAAGCAATCTGGTACTAAGGTGGACATGGACGTATAA 1052 Query 1272 GTTATCTGCTCATCTCCGTAACAACTACATAACGGTCTTCATCATCACTGCCTTGGAGAT 1331 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1053 GTTATCTGCTCATCTCCGTAACAACTACATCACGGTCTTCATCATCACTGCCTTGGAGAT 1112 Query 1332 TTACAGGCGATTCCAATGGGCGTTTTTCCGTATAGAGAACGTGTGGTATAAAATCAACAA 1391 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1113 TTACAGGCGATTCCAATGGGCGTTTTTCCGTATAGAGAACGTGTGGTACAAAATCAACAA 1172 Query 1392 TCCCAAGCATACTGCTCATCAATCTAATCCTCTTTCACTCCAACATGATATCGACAGTGA 1451 ||||||||||||| ||||||||||||||||||||||||| ||| | ||||||||||| || Sbjct 1173 TCCCAAGCATACTTCTCATCAATCTAATCCTCTTTCACTGCAAAACGATATCGACAGCGA 1232 Query 1452 ACATGAGAAATTACTCGCGCATAGTCACAGCCCCGGTGTATAAAAATCTCAATGTTCTTG 1511 |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 1233 ACATGAGAAATTACTCGCTCACAGTCACAGCCCCGGTGTATAAAAATCTCAATGTTCTTG 1292 Query 1512 TTGTTTTGTGCTAAGTTCTGAAAAGTTTTGAATAACAACACATACAAAGTACTCTGTTAC 1571 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1293 TTGTTTTGTGCTAAGTTCTGGAAAGTTTTGAATAACAACACATACAAAGTACTCTGTTAC 1352 Query 1572 TTATACTGTAACTTGTAACTTCCATTACAGAGAGAGAGA----CTACACTGGCTCTATAA 1627 ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1353 TTATACTGTAAATTGTAACTTCCATTACAGAGAGAGAGAGAGACTACACTGGCTCTATAA 1412 Query 1628 TGTACATGAAGATGTGTAATTGTGTAATTTCTCTTGTATTAATATTAACTTCACCTGTTC 1687 |||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 1413 TGTACAGGAAGATGTGTAATTGTGTAATTTCTCTTGGATTAATATTATCTTCACCTGTTC 1472 Query 1688 TTGTAAGAGATAAA 1701 |||||| ||||||| Sbjct 1473 TTGTAAAAGATAAA 1486 Score = 649 bits (351), Expect = 0.0 Identities = 382/397 (96%), Gaps = 1/397 (0%) Strand=Plus/Plus Query 124 ATGCCTGTCAATAATCCTCACTTGCGCAAATCTGGAAGTAGACACATCGTCACTAATCTC 183 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGCCTGTGAATAATCCTCACTTGCGCAAATCTGGAAGTAGACACATCGTCACTAATCTT 60 Query 184 GGAGATAATGACTTGAAGACTGCAAGTATGCTTCTGAGTACTTATGCGAAATTGCAAACT 243 |||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||| Sbjct 61 GGAGATAATGACTTGAAGACCGCAAGTATGCTTCTCAGTACATATGCGAAATTGCAAACT 120 Query 244 CCTATATTCCTTCGAAGTCTCAAGGTTGCTCTGTATATTGGTGGTCTTTATGTTTGTGGA 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CCTATATTCCTTCGAAGTCTCAAGGTTGCTCTGTATATTGGTGGTCTTTATGTTTGTGGA 180 Query 304 AAGGTTGGATTGGAATCTGTAATGAAAATGGGCGTAGAGACAAGAGAACTGTTCTTTTAT 363 ||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||| Sbjct 181 AAGATTGGATTGGAATCTGTAATGAAAATGGGAGTAGACACAAGAGAACTGTTCTTCTAT 240 Query 364 GAGACATTTCTGTATTATAACCCTCTCCTTCTCATTACGCTGATGGTCTGGCTCTGGGGT 423 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 241 GAGACATTTCTGTATTATAACCCTCTCCTTCTCATTACACTGATGGTCTGGCTCTGGGGT 300 Query 424 GTTAATTTGTGGGTTTTTTCTCGGTCTGGAGTAGATTATGCAGCAATCTTTTATCTAGGA 483 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 301 GTTAATTTGTGGGTTTTTTCTCGGTCTGGAGTCGATTATGCAGCTATCTTTTATCTAGGA 360 Query 484 TCAGATCATCTTAGTCACAGAGAGATATGGAAGTGTG 520 |||||||||||||||||| ||||||||||||| ||| Sbjct 361 CCAGATCATCTTAGTCACAAAGAGATATGGAAG-GTG 396 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64296333560 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5