BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32295.1
Length=1714
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482159 jgi|Araly1|482159|fgenesh2_kg.4__1219__AT2G32295.1 1805 0.0
> Ahg482159 jgi|Araly1|482159|fgenesh2_kg.4__1219__AT2G32295.1
Length=1486
Score = 1805 bits (977), Expect = 0.0
Identities = 1056/1094 (97%), Gaps = 6/1094 (1%)
Strand=Plus/Plus
Query 613 GTGGTTTTGTATTTCTCAGCTGTGATTATTCTGATAATCCCTTTCAATATCTTCTACATG 672
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 394 GTGGTTTTGTATTTCTCAGCTGTGATTATTCTGATAATCCCTTTCGATATCTTCTACATG 453
Query 673 TCGTCTCGCTACTATTTGCTTTGGACTTTTTGGCGAATACTCTTCCCTGTGCATGCAGTG 732
|||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 454 CCGTCTCGCTACTGTTTGCTTTGGACTTTTTGGCGAATACTCTTCCCGGTGCAGGCAGTG 513
Query 733 ACTTTTTCAGACTTCTTTCTAGCTGATATCCTGACTTCAATGTCAAAGGTTTTGTCGGAT 792
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 514 ACTTTTTCGGACTTCTTTCTAGCTGATATCCTGACTTCAATGTCAAAGGTTTTATCGGAT 573
Query 793 TTAGAACGTTCAGTATGTCGTATGGTCCATCGACAGGTGGCTACTGTTGCATGGTTTGAA 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 TTAGAACGTTCAGTATGTCGTATGGTCCATCGACAGGTGGCTACTGTTGCATGGTTTGAA 633
Query 853 GCTGATTCGGTTTGCGGGAGTCATTCTGCTGCAATTCCCTTGGTTCTTGTTCTACCTTAT 912
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 GCCGATTCGGTTTGCGGGAGTCATTCTGCTGCAATTCCCTTGGTTCTTGTTCTACCTTAT 693
Query 913 CTTTTCCGGCTGTTCCAATGCATTCGTCAGTACAAAGATAGCAAGGACATTGCAAACATC 972
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 694 CTTTTCCGGCTGTTCCAATGCATTCGTCAGTATAAAGATAGCAAGGACATTGCAAACATC 753
Query 973 TACAATGCTGGGAAGTATTTAACAGCGGTGCCTGTCATCTTTCTCTCAGCCCTCAAGTAT 1032
|||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 754 TACAATGCTGGGAAATATTTAACGGCGGTGCCTGTCATCTTTCTTTCAGCCCTCAAGTAT 813
Query 1033 TATATCGATCCAGATACATGGACT-TACTCCATACAGCCGGCATGGATCCTCTCTGGTCT 1091
| |||||||||||||||||||| | |||||||| |||||||||||||||||| |||||||
Sbjct 814 TTTATCGATCCAGATACATGGA-TGTACTCCATTCAGCCGGCATGGATCCTCGCTGGTCT 872
Query 1092 AGCTAACACTTTCTTCTCCTTCTTTTGGGATATATTACGCGATTGGGATCTAAGTGTCTT 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 AGCTAACACTTTCTTCTCCTTCTTTTGGGATATATTACGCGATTGGGATCTAAGTGTCTT 932
Query 1152 CACTCGGATTTTCAAATTCACCAGACCAAATCTTTTCTCCCATCTACTATATGGACGCCG 1211
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 933 CACTCGGATTTTCAAATTCAGCAGACCAAATCTTTTCTCCCATCTACTATATGGACGCCG 992
Query 1212 TTGGGTATATGTTTGGGTAATCGGAAGCAATCTGGTACTAAGGTGGACATGGACATATAA 1271
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 993 TTGGGTATATGTTTGGGTAATCGGAAGCAATCTGGTACTAAGGTGGACATGGACGTATAA 1052
Query 1272 GTTATCTGCTCATCTCCGTAACAACTACATAACGGTCTTCATCATCACTGCCTTGGAGAT 1331
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1053 GTTATCTGCTCATCTCCGTAACAACTACATCACGGTCTTCATCATCACTGCCTTGGAGAT 1112
Query 1332 TTACAGGCGATTCCAATGGGCGTTTTTCCGTATAGAGAACGTGTGGTATAAAATCAACAA 1391
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1113 TTACAGGCGATTCCAATGGGCGTTTTTCCGTATAGAGAACGTGTGGTACAAAATCAACAA 1172
Query 1392 TCCCAAGCATACTGCTCATCAATCTAATCCTCTTTCACTCCAACATGATATCGACAGTGA 1451
||||||||||||| ||||||||||||||||||||||||| ||| | ||||||||||| ||
Sbjct 1173 TCCCAAGCATACTTCTCATCAATCTAATCCTCTTTCACTGCAAAACGATATCGACAGCGA 1232
Query 1452 ACATGAGAAATTACTCGCGCATAGTCACAGCCCCGGTGTATAAAAATCTCAATGTTCTTG 1511
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1233 ACATGAGAAATTACTCGCTCACAGTCACAGCCCCGGTGTATAAAAATCTCAATGTTCTTG 1292
Query 1512 TTGTTTTGTGCTAAGTTCTGAAAAGTTTTGAATAACAACACATACAAAGTACTCTGTTAC 1571
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1293 TTGTTTTGTGCTAAGTTCTGGAAAGTTTTGAATAACAACACATACAAAGTACTCTGTTAC 1352
Query 1572 TTATACTGTAACTTGTAACTTCCATTACAGAGAGAGAGA----CTACACTGGCTCTATAA 1627
||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1353 TTATACTGTAAATTGTAACTTCCATTACAGAGAGAGAGAGAGACTACACTGGCTCTATAA 1412
Query 1628 TGTACATGAAGATGTGTAATTGTGTAATTTCTCTTGTATTAATATTAACTTCACCTGTTC 1687
|||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1413 TGTACAGGAAGATGTGTAATTGTGTAATTTCTCTTGGATTAATATTATCTTCACCTGTTC 1472
Query 1688 TTGTAAGAGATAAA 1701
|||||| |||||||
Sbjct 1473 TTGTAAAAGATAAA 1486
Score = 649 bits (351), Expect = 0.0
Identities = 382/397 (96%), Gaps = 1/397 (0%)
Strand=Plus/Plus
Query 124 ATGCCTGTCAATAATCCTCACTTGCGCAAATCTGGAAGTAGACACATCGTCACTAATCTC 183
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCCTGTGAATAATCCTCACTTGCGCAAATCTGGAAGTAGACACATCGTCACTAATCTT 60
Query 184 GGAGATAATGACTTGAAGACTGCAAGTATGCTTCTGAGTACTTATGCGAAATTGCAAACT 243
|||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 61 GGAGATAATGACTTGAAGACCGCAAGTATGCTTCTCAGTACATATGCGAAATTGCAAACT 120
Query 244 CCTATATTCCTTCGAAGTCTCAAGGTTGCTCTGTATATTGGTGGTCTTTATGTTTGTGGA 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTATATTCCTTCGAAGTCTCAAGGTTGCTCTGTATATTGGTGGTCTTTATGTTTGTGGA 180
Query 304 AAGGTTGGATTGGAATCTGTAATGAAAATGGGCGTAGAGACAAGAGAACTGTTCTTTTAT 363
||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 181 AAGATTGGATTGGAATCTGTAATGAAAATGGGAGTAGACACAAGAGAACTGTTCTTCTAT 240
Query 364 GAGACATTTCTGTATTATAACCCTCTCCTTCTCATTACGCTGATGGTCTGGCTCTGGGGT 423
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 GAGACATTTCTGTATTATAACCCTCTCCTTCTCATTACACTGATGGTCTGGCTCTGGGGT 300
Query 424 GTTAATTTGTGGGTTTTTTCTCGGTCTGGAGTAGATTATGCAGCAATCTTTTATCTAGGA 483
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 301 GTTAATTTGTGGGTTTTTTCTCGGTCTGGAGTCGATTATGCAGCTATCTTTTATCTAGGA 360
Query 484 TCAGATCATCTTAGTCACAGAGAGATATGGAAGTGTG 520
|||||||||||||||||| ||||||||||||| |||
Sbjct 361 CCAGATCATCTTAGTCACAAAGAGATATGGAAG-GTG 396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64296333560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5