BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32300.1
Length=995
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482160 jgi|Araly1|482160|fgenesh2_kg.4__1220__AT2G32300.1 1382 0.0
> Ahg482160 jgi|Araly1|482160|fgenesh2_kg.4__1220__AT2G32300.1
Length=909
Score = 1382 bits (748), Expect = 0.0
Identities = 862/916 (94%), Gaps = 11/916 (1%)
Strand=Plus/Plus
Query 1 GCACAAAACATCATCATCTCTTGATCTATCTTTCAGTTCTCTTGTCAATTTTCCCCCAAA 60
|||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||
Sbjct 1 GCACAAAACATCATCATCTCTTTATCTATCTTTCA-ATCTCTTGTTGATTTTCCCCCAAA 59
Query 61 AAGAAAAAGGATATAAGAAGA-T--AATGGCATCTAGAGAAATGCTGATCATAATCTCGG 117
||||||||| | | ||||||| | ||||||||||||||| |||||||||||||||||||
Sbjct 60 AAGAAAAAGAAGAGAAGAAGATTAGAATGGCATCTAGAGACATGCTGATCATAATCTCGG 119
Query 118 TCCTCGCTACTACACTCATTGGTTTAACAGTAGCTACTGACCATACCATTGGTGGTCCTA 177
| | | ||||||||| | |||||| |||||||||||||||| ||||||||||||||||
Sbjct 120 TAGTAACCACTACACTCGTCGGTTTAGCAGTAGCTACTGACCACACCATTGGTGGTCCTA 179
Query 178 GTGGTTGGACTGTAGGAGCTAGTCTTCGAACTTGGGCTGCAGGACAAACATTTGCTGTTG 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 180 GTGGTTGGACTGTAGGAGCTAGTCTTCGAACTTGGGCTGCAGGACAAACATTTGCTGTCG 239
Query 238 GAGACAATCTTGTTTTCTCCTACCCTGCTGCGTTCCACGACGTCGTTGAAGTCACAAAAC 297
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 240 GAGACAATCTTGTTTTCTCCTACCCTGCTGCATTCCACGACGTCGTTGAAGTCACAAAAC 299
Query 298 CCGAATTCGATAGCTGTCAAGCGGTTAAACCGCTTATAACGTTTGCTAATGGAAACTCCT 357
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CCGAATTTGATAGCTGTCAAGCGGTTAAACCGCTTATAACGTTTGCTAATGGAAACTCCT 359
Query 358 TGGTTCCTCTTACTACTCCTGGAAAAAGGTACTTCATTTGTGGAATGCCGGGACATTGTA 417
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGGTTCCTCTTATTACTCCTGGAAAAAGGTACTTCATTTGTGGAATGCCGGGACATTGTA 419
Query 418 GCCAAGGGATGAAACTTGAAGTAAACGTTGTTCCAACCGCAACCGTAGCACCAACCGCAC 477
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 420 TCCAAGGGATGAAACTTGAAGTAAACGTTGTTCCAACTGCAACCACAGCACCAACCGCAC 479
Query 478 CGCTTCCAAACACCGTCCCATCTCTAAACGCGCCTTCACCTTCTTCTGTTCTACCTATTC 537
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 480 CGCTTCCAAACACCGTCCCATCTCTAAACGCGCCTTCGCCTTCTTCTTTTCTACCTATTC 539
Query 538 AACCTCTTTTACCTCTTAACCCTGTCCC-AGttctctctccatcttcttctactccactt 596
| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 540 AGCCTCTTTTACCTCTTAACCCTGTCCCCA-TTCTCTCTCCATCTTCTTCTACTCCACTT 598
Query 597 ccttcctcctctctgcctctcattcctccactttctccGGCACTATCTCCGGCTACTGCA 656
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 599 CCTTCCTCCTCTCTGCCTCTCATTCCACCACTTTCTCCGGCACTATCTCCGGCTACTCCA 658
Query 657 GCGGGGACTTCTCTGCCGTTATTCCCAGGCTCACCAGGTAGCTCTAGCAGCACAACATCC 716
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 659 GCGGGGACTTCTCTGCCGTTGTTCCCAGGCTCACCAGGTAGCTCTAGCAGCACA---TCC 715
Query 717 ACCAAAACCGTCGGGACCTTCCCTTCTAGTACTACCGGTACAACGGCCGATCTTGCTGGC 776
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 716 ACCAAAACCGTCGGGACGTTCCCTTCTAGTACTACCGATACAACGGCCGATCTTGCTGGT 775
Query 777 GCAGACTCTCCTCCGGCTGACTCCTCCTCTGCCGCGAAAACACTTGTTTTAGGATTTGGA 836
|||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 776 GCAGGTTCTCCTCCGGCTGACTCCTCTTCTGCCGCGAAAACACTTGTTTTGGGATTTGGA 835
Query 837 TTCATGGTTGCTATGATGCTTCATTTGTTCTAAGTGTTCtttttttAAGTGGAGAGAAAT 896
||||||||||||||||| |||||||||||||||||||| | |||| ||||||||||| ||
Sbjct 836 TTCATGGTTGCTATGATTCTTCATTTGTTCTAAGTGTT-TCTTTT-AAGTGGAGAGAGAT 893
Query 897 TTGTTTGTAGAGGGAA 912
||||||| |||||||
Sbjct 894 TTGTTTGCGGAGGGAA 909
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36979229490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5