BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32310.1
Length=1262
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933796 jgi|Araly1|933796|scaffold_401784.1 614 6e-175
Ahg887808 jgi|Araly1|887808|Al_scaffold_0125_6 268 5e-71
> Ahg933796 jgi|Araly1|933796|scaffold_401784.1
Length=583
Score = 614 bits (332), Expect = 6e-175
Identities = 429/475 (90%), Gaps = 10/475 (2%)
Strand=Plus/Plus
Query 147 TTATGATGAGATAGAG-GATTTTCTCAAGATA-T-T-CGGAGAACCAGAGACACCAGCGT 202
|||||||||||||| | || ||||| ||||| | | ||||||| ||||||||| |||
Sbjct 32 TTATGATGAGATAG-GCGAATTTCTGGAGATATTATATGGAGAACGTGAGACACCATCGT 90
Query 203 TACTAGGAGATGCAGAAACGACACTTCCGTTGAACATCAATCCTCGTCCCGAGCCTGTAC 262
|| ||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||
Sbjct 91 TATTAGGAGATGCAGAAACGACACGTCCGTTGAACATCAATGCTCGTCCCGAGCCTTTAC 150
Query 263 CATCTCAATTTCAATACCAACCACCGCCACCACAACTGCCGTTATCGTCTAGTTTACACG 322
|||||||| ||||| |||||||||||| |||||||||| ||||||||||||| | ||| |
Sbjct 151 CATCTCAAGTTCAAGACCAACCACCGCGACCACAACTGTCGTTATCGTCTAGATCACATG 210
Query 323 CTATACAAGATC-T--TGATCAGTCTAGGCAATTTGGATACAACGAGCCAAATGTTTCTT 379
||||||||||| | |||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 211 ATATACAAGATCTTGATGATCAGTCTAGGCTATTTGGATACAACGAGCCTAATGTTTCTT 270
Query 380 TATGTGAAACAAGCAACAGAACTGCTCAGTTTCAACGTGGACACTTTCACTATCAGGAAC 439
||||||||||||| ||||| ||||||||||||||||||||||||| ||| | ||||||||
Sbjct 271 TATGTGAAACAAGGAACAGGACTGCTCAGTTTCAACGTGGACACTCTCAATCTCAGGAAC 330
Query 440 TAAACACACCATTTGCAA-CAGAGAGCTTAAATTCTTTATTGGCCTCCACTGAAGCGAAC 498
||||||||||||||| || |||||||| ||||||||||||| || ||||||||| || ||
Sbjct 331 TAAACACACCATTTG-AAGCAGAGAGCGTAAATTCTTTATTTGCATCCACTGAAACGGAC 389
Query 499 CAGAACTTATACACAGTGCCACCACATAATTTCGGATATGGTGAGCCCATTGGTTCTTTA 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 CAGAACTTATACACAGTGCCACCACATAATTTCGGATATGGTGAGCCCATTGGTTCTTTA 449
Query 559 TATGAAACTAGTAACAGAACTTATCAGCTTCAACGTGGACACTCTCACTATCAGG 613
| |||||||||||| || ||||||||||||||||||||||||||||| | |||||
Sbjct 450 TGTGAAACTAGTAATAGGACTTATCAGCTTCAACGTGGACACTCTCAATCTCAGG 504
> Ahg887808 jgi|Araly1|887808|Al_scaffold_0125_6
Length=267
Score = 268 bits (145), Expect = 5e-71
Identities = 223/260 (86%), Gaps = 8/260 (3%)
Strand=Plus/Plus
Query 831 atcatcatcatcatcatcaGAAAACCAACAAGATCATCA-TGAAC-AAGTTGTACCACCA 888
|||||||||||||||||||| ||||||||| || || | ||||| |||||||||||||
Sbjct 3 ATCATCATCATCATCATCAGCAAACCAACATGAACA--AGTGAACTCAGTTGTACCACCA 60
Query 889 AATGAACTTGATCCATTGACCATCCAGAGAAATCAATACCGAGAGGAAGCAAAACAGAGA 948
|| || | ||||||||||||| | |||| |||| || ||||||||||||||||||||
Sbjct 61 TATCTACATCATCCATTGACCATAGATAGAAGTCAAGACAGAGAGGAAGCAAAACAGAGA 120
Query 949 TATTTTGAGAAGAAGAGGAGTCGCAAATTCGTGAAGGC-ACACCGATATGAAAGTCGAGC 1007
||||||||||||||||| | ||||||||| ||||| | ||||||||||||||||||| |
Sbjct 121 TATTTTGAGAAGAAGAGCCGCCGCAAATTCATGAAG-CTACACCGATATGAAAGTCGATC 179
Query 1008 ACAAA-CAGCTGCGAAGAAAAAACGAAGCAGAGGTAGATTTGTGAAAAACGATGACGAAT 1066
| || |||||| ||||||||||||||| ||||||| |||||||||| | |||||||||
Sbjct 180 A-AACGCAGCTGTGAAGAAAAAACGAAGAAGAGGTAAATTTGTGAAAGAGGATGACGAAA 238
Query 1067 TCGACAATGACCCCCCAGCT 1086
||| |||||| |||||||||
Sbjct 239 TCGGCAATGATCCCCCAGCT 258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47158048329
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5