BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32340.1
Length=1256
Score E
Sequences producing significant alignments: (Bits) Value
Ahg344992 jgi|Araly1|344992|fgenesh1_pg.C_scaffold_4001334 809 0.0
Ahg887806 jgi|Araly1|887806|Al_scaffold_0125_4 490 1e-137
> Ahg344992 jgi|Araly1|344992|fgenesh1_pg.C_scaffold_4001334
Length=1044
Score = 809 bits (438), Expect = 0.0
Identities = 522/562 (93%), Gaps = 8/562 (1%)
Strand=Plus/Plus
Query 526 AAGGCCGCCAAGAAGCTTGAGGTTTTTCCTGGTGCTGAATTTCGTGTGGGATTTGAAGAG 585
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 487 AAGGCCGCCAAGAAGCTTGAAGTTTTTCCTGGTGCTGAATTTCGTGTGGCATTTGAAGAG 546
Query 586 GCAAACAAATATGGTGGCAG-AGTGTTTCTTGGCGATCGCT-CAGTACAGATCACGTTAC 643
|||||||||||||||||| | |||||||| ||||||||| | |||||||||||||| |||
Sbjct 547 GCAAACAAATATGGTGGC-GCAGTGTTTCCTGGCGATCG-TCCAGTACAGATCACGCTAC 604
Query 644 AGAGAACATGGGGTAAGATGCCTCTATGGCATAAAATAAAACTAGTGTATAGCATAGTAA 703
|||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 605 AGAGAACATGGGGTAAAATGCCTCTATGGCACAAAATAAAACTAGTGTACAGCATAGTGT 664
Query 704 GTCAAGCTGTCTTTCTGCCG-AACCCTAAGGAACTTGAGAAGATGCTGAAAGACCTGGGC 762
||||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||
Sbjct 665 CTCAAGCTGTCTTTCTGCCGAAACCC-GAGGAACTTGAGAAGATGCTGAAAGACATGAGC 723
Query 763 GATGGGGATATGCTGACATTGGCGATTCAAGAAATGAGCACGGAATTTCCGACTCTCATG 822
|||| |||||||||||||||| ||||||||||||||||| |||||||||| ||||||||
Sbjct 724 GATGCTGATATGCTGACATTGGTGATTCAAGAAATGAGCAAGGAATTTCCGTCTCTCATG 783
Query 823 GAGACACTTGTGCATGAGCGAGATAAGTACATGGCATATCAATTGTTGAGAATTGCAAGT 882
||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct 784 GAGACACTTGTGCATGAGCGAGATAAGTACATGGCATATTATTTGTTGAGACTTGCAAGT 843
Query 883 GAGCATAGTTCAGTCGTGGCAGTTGTGGGTAGAGGACATCTTCAAGGGATCAAGAAGAAT 942
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 844 GAGCATAGTTCAGTCGTGGCAGTTGTCGGTAGAGGGCATCTTCAAGGGATCAAGAAGAAT 903
Query 943 TGGAACCAAACTATAAACATAAAGGAACTGAT-GGAGTTACCGACAAATGAATCCATATT 1001
||||||||| ||||||||||||||||||| || ||||||||||||||||||||| || ||
Sbjct 904 TGGAACCAACCTATAAACATAAAGGAACT-ATTGGAGTTACCGACAAATGAATCGATTTT 962
Query 1002 TACTGTAAAGAATATTCTGAAATATATGGTGGTTGTAGTCGTTGGAACAGCCATAGTTTC 1061
||||||||||||||||||||||||| ||||||||| ||||| || ||||||||||||||
Sbjct 963 TACTGTAAAGAATATTCTGAAATATCTGGTGGTTGCAGTCGCCGGGACAGCCATAGTTTC 1022
Query 1062 CGGAATGTATCTTGCTAAGTAA 1083
||| ||||||||||||||||||
Sbjct 1023 CGGCATGTATCTTGCTAAGTAA 1044
Score = 344 bits (186), Expect = 9e-94
Identities = 268/305 (88%), Gaps = 15/305 (5%)
Strand=Plus/Plus
Query 129 TTCGATATGTGATAGTGGTGATGGTGATATATGCGCTGTAGCAGATTATGTTGAGTGTGT 188
|||||| |||| |||||||||| |||||| || | |||||| ||||||||||| ||||
Sbjct 198 TTCGATCGGTGAAAGTGGTGATGATGATATCTGTGGTGTAGCGGATTATGTTGA--GTGT 255
Query 189 GGCG-GTG-GA-GACGACGGAGAAGTTGGAGCTGCCTGAGGAATTTGCGAAAAGCGTTAT 245
||| || || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 -GCGTTTGAGACGAAGACGGAGAAGTTGGAGCTGCCTGAGGAATTTGCGAAAAGCGTTAT 314
Query 246 GGTTCTAACGTGCGAATCCACAGCTGAGGGTGGATCTTGTGATGTGTACTTAGTTGGCAC 305
|||||||||||| || ||||||| ||| ||||||||||||||||| ||||| ||||||||
Sbjct 315 GGTTCTAACGTGTGAGTCCACAGTTGAAGGTGGATCTTGTGATGTTTACTTGGTTGGCAC 374
Query 306 TGCTCACGTATCACAGGAATCATGTCGAGAAGTTGAAGCTGTAATCAGCGCCTTGAAACC 365
|||||| | | |||||||||||||||||||| |||||||||| ||||||||||
Sbjct 375 TGCTCA--T------G-AATCATGTCGAGAAGTTGAAACTGTAATCAGATCCTTGAAACC 425
Query 366 ACAGGCTGTCTTTTTGGAGTTGTGTTCAAGTCGATTGTCTATTCTCACACCTCAGACTGT 425
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 426 GCAGGCTGTCTTTGTGGAGTTGTGTACAAGTCGATTGTCTATTCTCACACCTCAGACTGT 485
Query 426 GAAGG 430
|||||
Sbjct 486 GAAGG 490
> Ahg887806 jgi|Araly1|887806|Al_scaffold_0125_4
Length=858
Score = 490 bits (265), Expect = 1e-137
Identities = 315/339 (93%), Gaps = 4/339 (1%)
Strand=Plus/Plus
Query 747 GCTGAAAGACCTGGGCGATGGGGATATGCTGACATTGGCGATTCAAGAAATGAGCACGGA 806
|||||||||| || |||||| |||||||||||| || ||||||||||||||||| |||
Sbjct 522 GCTGAAAGACATGAGCGATGCTGATATGCTGACAATGATGATTCAAGAAATGAGCAAGGA 581
Query 807 ATTTCCGA-CTCTCATGGAGACACTTGTGCATGAGCGAGATAAGTACATGGCATATCAAT 865
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 582 ATTTCC-ATCTCTCATGGAGACACTTGTGCATGAGCGAGATAAGTACATGGCATATCTAT 640
Query 866 TGTTGAGAATTGCAAGTGAGCATAGTTCAGTCGTGGCAGTTGTGGGTAGAGGACATCTTC 925
|||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 641 TGTTGAGACTTGCAAGTGAGCATAGTTCAGTCGTGGCAGTTGTCGGTAGAGGGCATCTTC 700
Query 926 AAGGGATCAAGAAGAATTGGAACCAAACTATAAACATAAAGGAACTGAT-GGAGTTACCG 984
|||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||
Sbjct 701 AAGGGATCAAGAAGAATTGGAACCAACCTATAAACATAAAGGAACT-ATTGGAGTTACCG 759
Query 985 ACAAATGAATCCATATTTACTGTAAAGAATATTCTGAAATATATGGTGGTTGTAGTCGTT 1044
||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 760 ACAAATGAATCGATTTTTACTGTAAAGAATATTCTGAAATATCTGGTGGTTGTAGTCGCC 819
Query 1045 GGAACAGCCATAGTTTCCGGAATGTATCTTGCTAAGTAA 1083
|| ||||||||||||||||| ||||||||||||||||||
Sbjct 820 GGGACAGCCATAGTTTCCGGCATGTATCTTGCTAAGTAA 858
Score = 353 bits (191), Expect = 1e-96
Identities = 305/357 (85%), Gaps = 19/357 (5%)
Strand=Plus/Plus
Query 29 GAGATTTTTCGTTAA-CCAACAGCTTAGTGAATGTGGACAAGGAGGACCTTCGTAGGGAG 87
||||||||| ||||| | || ||| |||| |||||||| |||||||| |||| |||||||
Sbjct 68 GAGATTTTTTGTTAAGCGAA-AGCATAGTAAATGTGGAGAAGGAGGAGCTTCTTAGGGAG 126
Query 88 GAAGCAGATAGCGACGC-AGGTTCAGTGATTATCTGCGACCATTCGATATGTGATAGTGG 146
|||| ||||||| |||| | |||||||||||| | ||||| ||||||| |||| |||||
Sbjct 127 GAAGTAGATAGCAACGCTA-GTTCAGTGATTACCGGCGACGATTCGATCGGTGAAAGTGG 185
Query 147 TGATGGTGATATATGCGCTGTAGCAGATTATGTTGAGTGTGTGGCG-GTG-GA-GACGAC 203
||||| |||||| || | |||||| ||||||||||| |||| ||| || || || |||
Sbjct 186 TGATGATGATATCTGTGGTGTAGCGGATTATGTTGA--GTGT-GCGTTTGAGACGAGGAC 242
Query 204 GGAGAAGTTGGAGCTGCCTGAGGAATTTGCGAAAAGCGTTATGGTTCTAACGTGCGAATC 263
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 243 GGAGAAGTTGGAGCTGCCTGAGGAATTTGCGAAAAGCGTTATGGTTCTAACGTGTGAGTC 302
Query 264 CACAGCTGAGGGTGGATCTTGTGATGTGTACTTAGTTGGCACTGCTCACGTATCACAG-G 322
||||| ||| ||||||||||||||||| ||||| |||||||||||||| ||||||||| |
Sbjct 303 CACAGTTGAAGGTGGATCTTGTGATGTTTACTTGGTTGGCACTGCTCATGTATCACAGAG 362
Query 323 --------AATCATGTCGAGAAGTTGAAGCTGTAATCAGCGCCTTGAAACCACAGGC 371
|||||||||||||||||||| |||||||||| |||||||||| |||||
Sbjct 363 CCTCCTTGAATCATGTCGAGAAGTTGAAACTGTAATCAGATCCTTGAAACCGCAGGC 419
Score = 159 bits (86), Expect = 3e-38
Identities = 102/109 (94%), Gaps = 4/109 (4%)
Strand=Plus/Plus
Query 527 AGGCCGCCAAGAAGCTTGAGGTTTTTCCTGGTGCTGAATTTCGTGTGGGATTTGAAGAGG 586
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 416 AGGCCGCCAAGAAGCTTGAGGTTTTTCCTGGTGCTGAATTTCGTGTGGCATTTGAAGAGG 475
Query 587 CAAACAAATATGGTGGCAG-AGTGTTTCTTGGCGATCGCTC-AGTACAG 633
|||||||||||||||| | |||||||| ||||||||| || |||||||
Sbjct 476 CAAACAAATATGGTGGT-GCAGTGTTTCCTGGCGATCG-TCCAGTACAG 522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46929310827
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5