BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32350.1
Length=763
Score E
Sequences producing significant alignments: (Bits) Value
Ahg359335 jgi|Araly1|359335|fgenesh1_pg.C_scaffold_125000003 1170 0.0
Ahg933800 jgi|Araly1|933800|scaffold_401788.1 883 0.0
> Ahg359335 jgi|Araly1|359335|fgenesh1_pg.C_scaffold_125000003
Length=729
Score = 1170 bits (633), Expect = 0.0
Identities = 698/730 (96%), Gaps = 2/730 (0%)
Strand=Plus/Plus
Query 35 ATGGAAATCAGCGAACAAGAATCTGTGTTGGAGGTCAAGAAACGTCTAGGACAGTTTCTT 94
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGGAAATCAGCGAACAAGAATCTGTGTTGGAGGTCAAGAAACGTTTAGGACAGTTTCTT 60
Query 95 CAGATACCAACATCTTCTATAACTCTCTTTGTCTCTTGTTGGGAACTCATCGACGGTCTT 154
||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAGATCCCAGCATCTTCTTTAACTCTCTTTGTCTCTTGTTGGGAACTCATCGACGGTCTT 120
Query 155 GACATCGAAGATTACCCAATCATCTCTCACGGCACCAGAATCGACCTCACCGTAACTCCC 214
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 GACATCGAAGATTACCCAATCATCTCTCACGGCACCAGAATCGACCTCACCGTGACTCCC 180
Query 215 CTTTTCACCGCACCGTCTTTTATCCACGCCG-CCGTTAGGAAAATTCACGTCACCGTCAA 273
|||||||||||||||||||||||| || ||| || |||| ||||| ||||||||||||||
Sbjct 181 CTTTTCACCGCACCGTCTTTTATCAAC-CCGGCCATTAGAAAAATCCACGTCACCGTCAA 239
Query 274 GTTCCCGTCAAAACAGTTCACCGTCGAAGTAGACAGAACCGAAACGGTAAGTAGCTTAAA 333
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 240 GTTCCCTTCAAAACAGTTCACCGTTGAAGTAGACAGAACCGAAACGGTAAGTAGCTTGAA 299
Query 334 GGACAAGATTCACATTGTTGAGAACACACCGATAAAGCGAATGCAGTTATACTATTCTGG 393
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 300 GGACAAGATTCACATTGTGGAGAACACACCGATAAAGCGAATGCAGTTATACTATTCCGG 359
Query 394 GATCGAGCTAGCTGATGATTATCGAAACCTAAACGAATATGGAATCACAGAATTCTCAGA 453
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 360 GATTGAGCTAGCTGATGATTATCGAAACCTAAACGAATATGGAATCAGTGAATTCTCAGA 419
Query 454 GATTGTGGTGTTTCTTAAGTCAATCAACCGTGCGAAAGACGTCGCTCCGGTAAGGAAACT 513
||||||||||||||| ||||| |||||||| || |||||||| |||||||| ||||||||
Sbjct 420 GATTGTGGTGTTTCTCAAGTCGATCAACCGAGCCAAAGACGTTGCTCCGGTGAGGAAACT 479
Query 514 CTGTTTCTTGGTGCAGACGTCATCGAGTTTATTCAACGGTGCGCGAATTCCAGTGGAGAT 573
||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct 480 CTGTTTCTTGGTGCAGACGTCATCGAGTTTATTCAACGGTGCGAGGATTCCTGTGGAGAT 539
Query 574 TAAGGACACTTGCACCATCTCGGAGATGCGAGAAGGGTTACAAGCTAACAAGACGTTGCC 633
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 540 TAAGGACACTTGCACCATCTCGGAGATGAGAGAAGGGTTACAAGCTAACAAGACGTTGCC 599
Query 634 AAGAGACGAGTATATATTCGTACACAAGCAACGGATTATGCGAGAGAATTGTAGTCTTCG 693
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ACGAGACGAGTATATATTCGTACACAAGCAACGGATTATGCGAGAGAATTGTAGTCTTCG 659
Query 694 GTGGCATGGTGTTGAAAATGGTGACACTCTTTTTGTGTTTAAAGGGTCTATTAGTCGTGA 753
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GTGGCATGGTGTTGAAAATTGTGACACTCTTTTTGTGTTTAAAGGGTCTATTAGTCGTGA 719
Query 754 AGGTTTCTGA 763
||||| ||||
Sbjct 720 AGGTTACTGA 729
> Ahg933800 jgi|Araly1|933800|scaffold_401788.1
Length=637
Score = 883 bits (478), Expect = 0.0
Identities = 540/570 (95%), Gaps = 3/570 (1%)
Strand=Plus/Plus
Query 9 TTGTTTCATACACACAAGAATTCACAATGGAAATCAGCGAACAAGAATCTGTGTTGGAGG 68
|||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1 TTGTTTCATATACACAAGAATTCACCATGGAAATCAGTGAACAAGAATCTGTGTTGGAGG 60
Query 69 TCAAGAAACGTCTAGGACAGTTTCTTCAGATACCAACATCTTCTATAACTCTCTTTGTCT 128
||||||||||| ||||||||||||||||||| ||| |||||||| |||||||||||||||
Sbjct 61 TCAAGAAACGTTTAGGACAGTTTCTTCAGATCCCAGCATCTTCTTTAACTCTCTTTGTCT 120
Query 129 CTTGTTGGGAACTCATCGACGGTCTTGACATCGAAGATTACCCAATCATCTCTCACGGCA 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTTGTTGGGAACTCATCGACGGTCTTGACATCGAAGATTACCCAATCATCTCTCACGGCA 180
Query 189 CCAGAATCGACCTCACCGTAACTCCCCTTTTCACCGCACCGTCTTTTATCCACGCCG-CC 247
|||||||||||||||||||||||||| ||||||||||||||||||||||| || ||| ||
Sbjct 181 CCAGAATCGACCTCACCGTAACTCCCTTTTTCACCGCACCGTCTTTTATCAAC-CCGGCC 239
Query 248 GTTAGGAAAATTCACGTCACCGTCAAGTTCCCGTCAAAACAGTTCACCGTCGAAGTAGAC 307
||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 240 GTTAGAAAAATCCACGTCACCGTCAAGTTCCCGTCAAAACAGTTCACCGTTGAAGTAGAC 299
Query 308 AGAACCGAAACGGTAAGTAGCTTAAAGGACAAGATTCACATTGTTGAGAACACACCGATA 367
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 300 AGAACCGAAACGGTAAGTAGCTTGAAGGACAAGATTCACATTGTGGAGAACACACCGATA 359
Query 368 AAGCGAATGCAGTTATACTATTCTGGGATCGAGCTAGCTGATGATTATCGAAACCTAAAC 427
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 360 AAGCGAATGCAGTTATACTATTCCGGGATTGAGCTAGCTGATGATTATCGAAACCTAAAC 419
Query 428 GAATATGGAATCACAGAATTCTCAGAGATTGTGGTGTTTCTTAAGTCAATCAACCGTGCG 487
||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 420 GAATATGGAATCAGTGAATTCTCAGAGATTGTGGTGTTTCTCAAGTCGATCAACCGAGCC 479
Query 488 AAAGACGTCGCTCCGGTAAGGAAACTCTGTTTCTTGGTGCAGACGTCATCGAGTTTATTC 547
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AAAGACGTTGCTCCGGTGAGGAAACTCTGTTTCTTGGTGCAGACGTCATCGAGTTTATTC 539
Query 548 AACGGTGCGCGAATTCCAGTGGAGATTAAG 577
||||||||| | ||||| |||||||| |||
Sbjct 540 AACGGTGCGAGGATTCCTGTGGAGAT-AAG 568
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28134712746
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5