BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32360.1
Length=528
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482164 jgi|Araly1|482164|fgenesh2_kg.4__1224__AT2G32360.1 649 0.0
Ahg497275 jgi|Araly1|497275|fgenesh2_kg.125__1__AT2G32360.1 643 0.0
> Ahg482164 jgi|Araly1|482164|fgenesh2_kg.4__1224__AT2G32360.1
Length=477
Score = 649 bits (351), Expect = 0.0
Identities = 440/481 (91%), Gaps = 14/481 (3%)
Strand=Plus/Plus
Query 1 ATGAAGGTGAGTGTGGAGATAATAACGGGAACATTTATAGATACGGACGTGAGTGAAGAT 60
||||| ||||||||||||||||||||||| || ||||| ||| |||||||||||||||||
Sbjct 1 ATGAAAGTGAGTGTGGAGATAATAACGGGGACGTTTATTGATGCGGACGTGAGTGAAGAT 60
Query 61 GCGACGGTC-AAGCAAATGAAGGAGAAGATCGCGGTGGAGGTGAAATTGCCGGTGACGCG 119
|||||||| ||| || |||||||||||||||||| |||||||||||| |||||||| ||
Sbjct 61 ACGACGGTCAAAG-AACTGAAGGAGAAGATCGCGGCGGAGGTGAAATTACCGGTGACTCG 119
Query 120 TTTGATACTTGTCATTGGAGATGAAGAGACGAGAA-GATTGGTGATGGAGGATGAAGATG 178
||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||
Sbjct 120 TTTGATACTTGTCATCGGAGATGAAGAGACGAGAAGGA-TGGTGATGGAGGATGAAGATG 178
Query 179 ACATGATGTTGAGAGATTTAGGAGTGGGAGAAGATTCTCATATCTATTTGTTCTTTAAGC 238
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 179 ACATGATGCTGAGAGATTTAGGAGTGGGAGAAGATTCTCATATGTATTTGTTCTTTAAGC 238
Query 239 ATCCTGATTTGGTTTCTAAGGAAGAGAGA-TCTAAAGGAG-A-A-GA---TGATGATGAT 291
||||||||||||||||| |||||||| || |||||||||| | | || ||||||||||
Sbjct 239 ATCCTGATTTGGTTTCTGAGGAAGAG-GAATCTAAAGGAGGAGAAGAAGATGATGATGAT 297
Query 292 CCTATGGAGGAGGTTTCTTCGGAAGCAGAGAGTGGAAGAGGAAACGAAGAAGAAGTCGAA 351
||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||
Sbjct 298 CCTATGGAGGAGGTTTCGTCGGAAGCAGAGAGTCCAAGAGGAAACGAAGAAGAAGACGAA 357
Query 352 AAGGCAAAAATAGACGGtgaagaggaag-atcaagcgatgaaagatgaagaagaagatag 410
||| ||||||||||||| |||||| ||| ||||||||||||| |||||||||||||||||
Sbjct 358 AAGCCAAAAATAGACGGGGAAGAG-AAGGATCAAGCGATGAAGGATGAAGAAGAAGATAG 416
Query 411 agatgtgaaagtagaagaagatgaagaagagaaggagaaggagaaggatggtgaagcaaa 470
|||| |||||| |||||||||||||||| |||| |||| ||||||||||||||||||||
Sbjct 417 CGATGAGAAAGTTGAAGAAGATGAAGAAGCGAAGCAGAATGAGAAGGATGGTGAAGCAAA 476
Query 471 g 471
|
Sbjct 477 G 477
> Ahg497275 jgi|Araly1|497275|fgenesh2_kg.125__1__AT2G32360.1
Length=478
Score = 643 bits (348), Expect = 0.0
Identities = 439/481 (91%), Gaps = 14/481 (3%)
Strand=Plus/Plus
Query 1 ATGAAGGTGAGTGTGGAGATAATAACGGGAACATTTATAGATACGGACGTGAGTGAAGAT 60
||||| ||||||||||||||||||||||| || ||||| ||| |||||||||||||||||
Sbjct 1 ATGAAAGTGAGTGTGGAGATAATAACGGGGACGTTTATTGATGCGGACGTGAGTGAAGAT 60
Query 61 GCGACGGTC-AAGCAAATGAAGGAGAAGATCGCGGTGGAGGTGAAATTGCCGGTGACGCG 119
|||||||| ||| || |||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 61 ACGACGGTCAAAG-AACTGAAGGAGAAGATCGCGGCGGAGGTGAAATCACCGGTGACTCG 119
Query 120 TTTGATACTTGTCATTGGAGATGAAGAGACGAGAA-GATTGGTGATGGAGGATGAAGATG 178
||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||
Sbjct 120 TTTGATACTTGTCATCGGAGATGAAGAGACGAGAAGGA-TGGTGATGGAGGATGAAGATG 178
Query 179 ACATGATGTTGAGAGATTTAGGAGTGGGAGAAGATTCTCATATCTATTTGTTCTTTAAGC 238
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 179 ACATGATGCTGAGAGATTTAGGAGTGGGAGAAGATTCTCATATGTATTTGTTCTTTAAGC 238
Query 239 ATCCTGATTTGGTTTCTAAGGAAGAGAGA-TCTAAAGGAG-A--AG-A--TGATGATGAT 291
||||||||||||||||| |||||||| || |||||||||| | || | ||||||||||
Sbjct 239 ATCCTGATTTGGTTTCTGAGGAAGAG-GAATCTAAAGGAGGAGGAGGAGATGATGATGAT 297
Query 292 CCTATGGAGGAGGTTTCTTCGGAAGCAGAGAGTGGAAGAGGAAACGAAGAAGAAGTCGAA 351
||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||
Sbjct 298 CCTATGGAGGAGGTTTCGTCGGAAGCAGAGAGTCCAAGAGGAAACGAAGAAGAAGACGAA 357
Query 352 AAGGCAAAAATAGACGGtgaagaggaag-atcaagcgatgaaagatgaagaagaagatag 410
||| ||||||||||||| |||||| ||| ||||||||||||| |||||||||||||||||
Sbjct 358 AAGCCAAAAATAGACGGGGAAGAG-AAGGATCAAGCGATGAAGGATGAAGAAGAAGATAG 416
Query 411 agatgtgaaagtagaagaagatgaagaagagaaggagaaggagaaggatggtgaagcaaa 470
|||| |||||| |||||||||||||||| |||| |||| ||||||||||||||||||||
Sbjct 417 CGATGAGAAAGTTGAAGAAGATGAAGAAGCGAAGCAGAATGAGAAGGATGGTGAAGCAAA 476
Query 471 g 471
|
Sbjct 477 G 477
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19230416856
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5