BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G32360.1 Length=528 Score E Sequences producing significant alignments: (Bits) Value Ahg482164 jgi|Araly1|482164|fgenesh2_kg.4__1224__AT2G32360.1 649 0.0 Ahg497275 jgi|Araly1|497275|fgenesh2_kg.125__1__AT2G32360.1 643 0.0 > Ahg482164 jgi|Araly1|482164|fgenesh2_kg.4__1224__AT2G32360.1 Length=477 Score = 649 bits (351), Expect = 0.0 Identities = 440/481 (91%), Gaps = 14/481 (3%) Strand=Plus/Plus Query 1 ATGAAGGTGAGTGTGGAGATAATAACGGGAACATTTATAGATACGGACGTGAGTGAAGAT 60 ||||| ||||||||||||||||||||||| || ||||| ||| ||||||||||||||||| Sbjct 1 ATGAAAGTGAGTGTGGAGATAATAACGGGGACGTTTATTGATGCGGACGTGAGTGAAGAT 60 Query 61 GCGACGGTC-AAGCAAATGAAGGAGAAGATCGCGGTGGAGGTGAAATTGCCGGTGACGCG 119 |||||||| ||| || |||||||||||||||||| |||||||||||| |||||||| || Sbjct 61 ACGACGGTCAAAG-AACTGAAGGAGAAGATCGCGGCGGAGGTGAAATTACCGGTGACTCG 119 Query 120 TTTGATACTTGTCATTGGAGATGAAGAGACGAGAA-GATTGGTGATGGAGGATGAAGATG 178 ||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||| Sbjct 120 TTTGATACTTGTCATCGGAGATGAAGAGACGAGAAGGA-TGGTGATGGAGGATGAAGATG 178 Query 179 ACATGATGTTGAGAGATTTAGGAGTGGGAGAAGATTCTCATATCTATTTGTTCTTTAAGC 238 |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 179 ACATGATGCTGAGAGATTTAGGAGTGGGAGAAGATTCTCATATGTATTTGTTCTTTAAGC 238 Query 239 ATCCTGATTTGGTTTCTAAGGAAGAGAGA-TCTAAAGGAG-A-A-GA---TGATGATGAT 291 ||||||||||||||||| |||||||| || |||||||||| | | || |||||||||| Sbjct 239 ATCCTGATTTGGTTTCTGAGGAAGAG-GAATCTAAAGGAGGAGAAGAAGATGATGATGAT 297 Query 292 CCTATGGAGGAGGTTTCTTCGGAAGCAGAGAGTGGAAGAGGAAACGAAGAAGAAGTCGAA 351 ||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||| Sbjct 298 CCTATGGAGGAGGTTTCGTCGGAAGCAGAGAGTCCAAGAGGAAACGAAGAAGAAGACGAA 357 Query 352 AAGGCAAAAATAGACGGtgaagaggaag-atcaagcgatgaaagatgaagaagaagatag 410 ||| ||||||||||||| |||||| ||| ||||||||||||| ||||||||||||||||| Sbjct 358 AAGCCAAAAATAGACGGGGAAGAG-AAGGATCAAGCGATGAAGGATGAAGAAGAAGATAG 416 Query 411 agatgtgaaagtagaagaagatgaagaagagaaggagaaggagaaggatggtgaagcaaa 470 |||| |||||| |||||||||||||||| |||| |||| |||||||||||||||||||| Sbjct 417 CGATGAGAAAGTTGAAGAAGATGAAGAAGCGAAGCAGAATGAGAAGGATGGTGAAGCAAA 476 Query 471 g 471 | Sbjct 477 G 477 > Ahg497275 jgi|Araly1|497275|fgenesh2_kg.125__1__AT2G32360.1 Length=478 Score = 643 bits (348), Expect = 0.0 Identities = 439/481 (91%), Gaps = 14/481 (3%) Strand=Plus/Plus Query 1 ATGAAGGTGAGTGTGGAGATAATAACGGGAACATTTATAGATACGGACGTGAGTGAAGAT 60 ||||| ||||||||||||||||||||||| || ||||| ||| ||||||||||||||||| Sbjct 1 ATGAAAGTGAGTGTGGAGATAATAACGGGGACGTTTATTGATGCGGACGTGAGTGAAGAT 60 Query 61 GCGACGGTC-AAGCAAATGAAGGAGAAGATCGCGGTGGAGGTGAAATTGCCGGTGACGCG 119 |||||||| ||| || |||||||||||||||||| ||||||||||| |||||||| || Sbjct 61 ACGACGGTCAAAG-AACTGAAGGAGAAGATCGCGGCGGAGGTGAAATCACCGGTGACTCG 119 Query 120 TTTGATACTTGTCATTGGAGATGAAGAGACGAGAA-GATTGGTGATGGAGGATGAAGATG 178 ||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||| Sbjct 120 TTTGATACTTGTCATCGGAGATGAAGAGACGAGAAGGA-TGGTGATGGAGGATGAAGATG 178 Query 179 ACATGATGTTGAGAGATTTAGGAGTGGGAGAAGATTCTCATATCTATTTGTTCTTTAAGC 238 |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 179 ACATGATGCTGAGAGATTTAGGAGTGGGAGAAGATTCTCATATGTATTTGTTCTTTAAGC 238 Query 239 ATCCTGATTTGGTTTCTAAGGAAGAGAGA-TCTAAAGGAG-A--AG-A--TGATGATGAT 291 ||||||||||||||||| |||||||| || |||||||||| | || | |||||||||| Sbjct 239 ATCCTGATTTGGTTTCTGAGGAAGAG-GAATCTAAAGGAGGAGGAGGAGATGATGATGAT 297 Query 292 CCTATGGAGGAGGTTTCTTCGGAAGCAGAGAGTGGAAGAGGAAACGAAGAAGAAGTCGAA 351 ||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||| Sbjct 298 CCTATGGAGGAGGTTTCGTCGGAAGCAGAGAGTCCAAGAGGAAACGAAGAAGAAGACGAA 357 Query 352 AAGGCAAAAATAGACGGtgaagaggaag-atcaagcgatgaaagatgaagaagaagatag 410 ||| ||||||||||||| |||||| ||| ||||||||||||| ||||||||||||||||| Sbjct 358 AAGCCAAAAATAGACGGGGAAGAG-AAGGATCAAGCGATGAAGGATGAAGAAGAAGATAG 416 Query 411 agatgtgaaagtagaagaagatgaagaagagaaggagaaggagaaggatggtgaagcaaa 470 |||| |||||| |||||||||||||||| |||| |||| |||||||||||||||||||| Sbjct 417 CGATGAGAAAGTTGAAGAAGATGAAGAAGCGAAGCAGAATGAGAAGGATGGTGAAGCAAA 476 Query 471 g 471 | Sbjct 477 G 477 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19230416856 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5