BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G32370.1

Length=2863
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg887803 jgi|Araly1|887803|Al_scaffold_0125_1                       457    2e-127


> Ahg887803 jgi|Araly1|887803|Al_scaffold_0125_1
Length=381

 Score =  457 bits (247),  Expect = 2e-127
 Identities = 334/375 (89%), Gaps = 9/375 (2%)
 Strand=Plus/Plus

Query  240  ATGTCTCAGTCAAACATGGTACCAGTGGCTaacaacggagacaacaacaacgacaacgaa  299
            |||||||||||||||||||||||||||| ||||||||||||     |  |  ||||||||
Sbjct  1    ATGTCTCAGTCAAACATGGTACCAGTGGTTAACAACGGAGATGGTGA-TA--ACAACGAA  57

Query  300  aacaacaacaacaacaacaacaaTGGTGGAACTGACAACACTAATGCTGGAAATGATTCT  359
            |||||||||   | |||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct  58   AACAACAACGTTAGCAACAACAATGGTGGAGCTGACAACACTAATGCTGGAAATCATTCT  117

Query  360  GGAGATCAAGATTTCGACAGTGGGAATACCTCAAGTGGCAATCATGGAGAAGGGTTGGGA  419
            |||||||||||  |||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct  118  GGAGATCAAGAACTCGAAAGTGGGAATACCTCAAGTGGCAATCATGGAGAAGGGTTGCGA  177

Query  420  AACAATCAAGCTCCTCGTCATAAGAAGAAAAA-ATACAATCGTCACACCCAACTTCAGAT  478
            ||||| |||||||||| || |||||| ||||| |||| ||||||||| |||| |||||||
Sbjct  178  AACAACCAAGCTCCTCCTCCTAAGAA-AAAAAGATACCATCGTCACAGCCAAATTCAGAT  236

Query  479  TTC-GGAGATGGAAGCTTTCTTCAGAGAGTGTCCTCACCCAGATGACAAACAAAGGTACG  537
            | | |||| ||||||| ||||||| |||||||||||||||||||||||| |||||| |||
Sbjct  237  T-CAGGAGTTGGAAGCATTCTTCAAAGAGTGTCCTCACCCAGATGACAAGCAAAGGAACG  295

Query  538  -ACCTTAGCGCTCAATTGGGATTGGACCCTGTTCAGATCAAATTCTGGTTCCAGAACAAA  596
             || |||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct  296  CAC-TTAGCGTTCAATTGGGATTGGACCCTGTTCAGGTCAAGTTCTGGTTCCAGAACAAA  354

Query  597  CGCACTCAAAACAAG  611
            |||||||||| ||||
Sbjct  355  CGCACTCAAAGCAAG  369



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 108062025065


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5