BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32380.1
Length=749
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482166 jgi|Araly1|482166|fgenesh2_kg.4__1226__AT2G32380.1 811 0.0
Ahg344996 jgi|Araly1|344996|fgenesh1_pg.C_scaffold_4001338 760 0.0
> Ahg482166 jgi|Araly1|482166|fgenesh2_kg.4__1226__AT2G32380.1
Length=661
Score = 811 bits (439), Expect = 0.0
Identities = 516/553 (93%), Gaps = 5/553 (1%)
Strand=Plus/Plus
Query 21 agaa-aaacaaaatccattgaagaaggagaagaagaaaaaaaaTGGGAGCATTTTGCAAG 79
|||| ||| |||||||||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 31 AGAACAAAAAAAATCCATTGAAGAA--A-AAGAA-AAAAAAAATGGGAGCATTTTGCAAG 86
Query 80 TTGATCGATGCGGTTCTCTTCTTATACTTTGCTCTCATGGCGGTAATTGCGCCGCTTATC 139
|| |||||||||||||||||||||||||| ||||| |||||||| ||||| ||||| |||
Sbjct 87 TTAATCGATGCGGTTCTCTTCTTATACTTCGCTCTAATGGCGGTCATTGCACCGCTCATC 146
Query 140 GACGGTCAAACGAGTCTTCCCGGCGATATCTTCCCGGCGTTTATCGTCGATCTGAATCGC 199
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 147 GACGGTCAAACAAGTCTCCCCGGCGATATCTTCCCGGCGTTTATCGTCGATCTGAACCGC 206
Query 200 TGGTACATTGATGAATTTGGAGATTATCTAGTCAAAGAGAAGCCGCATTTCCTAGTCGGA 259
|||||||| |||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct 207 TGGTACATCGATGAATTTGGAGATTATCTAGTCAAGGATAAGCCGCATTTCCTCGTCGGA 266
Query 260 CTCGTCTGGCATGAGCTTTTGCTTCTTTGGCCGCTCTCAATCGTCAACGTCTACGCAATT 319
||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 267 CTCGTCTGGCACGAGCTTCTGCTTCTTTGGCCGCTCTCGATCGTCAACGTCTACGCAATT 326
Query 320 CTCGCTGGGAAATCGTGGTTTGGTACCACCTCAATGGTGTACGGAGCTTCCGTCGTGACT 379
||||| |||||||| ||||| ||||||| || |||||||||||||||||||||||||||
Sbjct 327 CTCGCCGGGAAATCTTGGTTCAGTACCACTTCCATGGTGTACGGAGCTTCCGTCGTGACT 386
Query 380 TCTATGGCTGCTATACTGGGAGAGATGATAGGATCAGGGAAGGCATCTGAGAAATTGTTG 439
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 387 TCTATGGCTGCTATACTGGGAGAGATGATAGGTTCAGGGAAGGCATCTGAGAAATTGTTG 446
Query 440 ATGATGTATGTGCCATTCATGGGTGTTGGTATTCTAGCTCTTCTTCGTGGTCTTCTTTCT 499
|| || ||||||||||||||||| |||||||||||||||||||||| |||||||| |||
Sbjct 447 ATAATTTATGTGCCATTCATGGGAATTGGTATTCTAGCTCTTCTTCGCGGTCTTCTCTCT 506
Query 500 CAATCCAACAAAAGTGGTGGAGCTGTTGGCAAGAGACCTGCTATTTTGGCCAGGAGAAAG 559
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 507 CAATCCAACAAAAGCGGTGGAGCTGTTGGTAAGAGACCTGCTATTTTGGCCAGGAGAAAG 566
Query 560 CGTGCTTGAGGTA 572
|||||||||||||
Sbjct 567 CGTGCTTGAGGTA 579
> Ahg344996 jgi|Araly1|344996|fgenesh1_pg.C_scaffold_4001338
Length=507
Score = 760 bits (411), Expect = 0.0
Identities = 475/507 (94%), Gaps = 0/507 (0%)
Strand=Plus/Plus
Query 62 ATGGGAGCATTTTGCAAGTTGATCGATGCGGTTCTCTTCTTATACTTTGCTCTCATGGCG 121
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1 ATGGGAGCATTTTGCAAGTTGATCGATGCAGTTCTCTTCTTATACTTTGCTCTAATGGCG 60
Query 122 GTAATTGCGCCGCTTATCGACGGTCAAACGAGTCTTCCCGGCGATATCTTCCCGGCGTTT 181
| |||||||||| |||||| |||||| ||||||||||| ||||||||||||||||||
Sbjct 61 ATCGTTGCGCCGCTCATCGACAGTCAAATAAGTCTTCCCGGAGATATCTTCCCGGCGTTT 120
Query 182 ATCGTCGATCTGAATCGCTGGTACATTGATGAATTTGGAGATTATCTAGTCAAAGAGAAG 241
|||||||||||||||| |||||||| |||||||||||||||||||||| ||| ||||||
Sbjct 121 CTCGTCGATCTGAATCGTTGGTACATCGATGAATTTGGAGATTATCTAGCCAAGGAGAAG 180
Query 242 CCGCATTTCCTAGTCGGACTCGTCTGGCATGAGCTTTTGCTTCTTTGGCCGCTCTCAATC 301
||||||||||| || |||||| ||||||| |||||| ||||||||||||||||||| |||
Sbjct 181 CCGCATTTCCTCGTAGGACTCATCTGGCACGAGCTTCTGCTTCTTTGGCCGCTCTCGATC 240
Query 302 GTCAACGTCTACGCAATTCTCGCTGGGAAATCGTGGTTTGGTACCACCTCAATGGTGTAC 361
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 241 GTCAACGTCTACGCAATTCTCGCCGGGAAATCTTGGTTTGGTACCACCTCAATGGTGTAC 300
Query 362 GGAGCTTCCGTCGTGACTTCTATGGCTGCTATACTGGGAGAGATGATAGGATCAGGGAAG 421
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 301 GGAGCTTCCGTCGTGACTTCTATGGCTGCTATACTGGGAGAGATGGTAGGTTCAGGGAAG 360
Query 422 GCATCTGAGAAATTGTTGATGATGTATGTGCCATTCATGGGTGTTGGTATTCTAGCTCTT 481
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 361 GCATCTGAGAAATTGTTGATGATGCATTTGCCATTCATGGGTGTTGGTATTCTAGCTCTT 420
Query 482 CTTCGTGGTCTTCTTTCTCAATCCAACAAAAGTGGTGGAGCTGTTGGCAAGAGACCTGCT 541
||||||||||||||||||| ||||| |||||| ||||||||| ||||||||||||||||
Sbjct 421 CTTCGTGGTCTTCTTTCTCGATCCAGCAAAAGCAGTGGAGCTGATGGCAAGAGACCTGCT 480
Query 542 ATTTTGGCCAGGAGAAAGCGTGCTTGA 568
|||||||||||||||||||||||||||
Sbjct 481 ATTTTGGCCAGGAGAAAGCGTGCTTGA 507
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27600991908
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5