BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32390.3
Length=2749
Score E
Sequences producing significant alignments: (Bits) Value
Ahg344999 jgi|Araly1|344999|fgenesh1_pg.C_scaffold_4001341 2832 0.0
Ahg470513 jgi|Araly1|470513|fgenesh2_kg.1__467__AT1G05200.2 1352 0.0
Ahg932642 jgi|Araly1|932642|scaffold_400630.1 244 2e-63
> Ahg344999 jgi|Araly1|344999|fgenesh1_pg.C_scaffold_4001341
Length=2877
Score = 2832 bits (1533), Expect = 0.0
Identities = 1690/1767 (96%), Gaps = 6/1767 (0%)
Strand=Plus/Plus
Query 11 ATGGGATTTTTC--G-TGA-T-GA-TTAGAGATGTTTCCATGGGATTTATGCTCCTATGT 64
|||||||||||| | ||| | || |||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGGGATTTTTCGTGATGATTAGAGTTAGAGATGTTTCCATGGGACTTATGCTCCTATGT 60
Query 65 ATTTCTGCTTTGTGGGTTTTGCCAATACAAGGTGCTGGTAGAGAAAGTTTCTCAAGAAAC 124
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 GTTTTTGCTTTGTGGGTTTTGCCAATACAAGGAGCTGGTAGAGAAAGTTTCTCAAGAAAC 120
Query 125 TCTTCTTCTTCTTCTCTGCCAAGCTCTGTAAACGTTGGAGCTCTGTTTACTTATGATTCT 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTTCTTCTTCTTCTCTGCCAAGCTCTGTAAACGTTGGAGCTCTGTTTACTTATGATTCT 180
Query 185 TTCATTGGAAGAGCGGCCAAACTTGCGTTTGTGGCGGCCATTGAAGACATTAATGCTGAC 244
||| |||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||
Sbjct 181 TTCGTTGGAAGAGCGGCCAAACTTGCGTTTGTGGTGGCCATTGACGACGTTAATGCTGAT 240
Query 245 CAGAGTATCCTCAGGGGCACCAAGCTTAATATTGTCTTCCAGGACACTAATTGCAGTGGA 304
|||||||| ||||||||||||||||||||||| |||||||||||| | ||||||||||||
Sbjct 241 CAGAGTATTCTCAGGGGCACCAAGCTTAATATCGTCTTCCAGGACGCAAATTGCAGTGGA 300
Query 305 TTTGTTGGCACCATGGGAGCTTTGCAGCTAATGGAGAACAAGGTGGTTGCAGCCATTGGT 364
||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 301 TTTGTAGGCACCATGGGAGCTTTGCAGCTAATGGAGAACAGGGTTGTTGCAGCCATTGGT 360
Query 365 CCACAATCTTCAGGAATTGGTCACATAATCTCCCATGTAGCTAATGAGCTTCATGTACCT 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCACAATCTTCAGGAATTGGTCACATAATCTCCCATGTAGCTAATGAGCTTCATGTACCT 420
Query 425 TTCTTGTCATTTGCAGCAACGGACCCGACTCTTTCTTCGCTTCAATACCCTTATTTCCTT 484
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 CTCCTGTCATTTGCAGCAACGGACCCGACTCTTTCTTCGCTTCAGTACCCTTATTTCCTT 480
Query 485 CGTACCACACAGAATGATTACTTCCAGATGAATGCAATCACGGATTTTGTATCCTATTTT 544
|||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||
Sbjct 481 CGTACCACACAGAACGACTACTTCCAGATGAATGCAATCGCGGATTTTGTATCCTATTTC 540
Query 545 CGATGGAGAGAAGTTGTTGCGATCTTTGTGGATGATGAGTATGGTAGGAATGGAATATCT 604
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 541 CGATGGAGAGAAGTTGTTGCGATCTTTGTGGATGATGAGTATGGTAGGAACGGGATATCT 600
Query 605 GTATTAGGTGATGCTTTAGCCAAGAAACGTGCCAAGATCTCTTACAAGGCTGCATTTCCA 664
|| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 601 GTCTTAGGCGATATTTTAGCCAAGAAACGTGCCAAGATCTCTTACAAGGCTGCATTTACA 660
Query 665 CCTGGTGCAGATAATAGCTCAATCAGTGATTTATTGGCTTCTGTTAATCTGATGGAATCT 724
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CCTGGTGCAGATAGTAGCTCAATCAGTGATTTATTGGCTTCTGTTAATCTGATGGAATCT 720
Query 725 CGCATCTTTGTTGTTCATGTGAATCCTGATTCGGGTTTAAACATATTCTCTGTCGCCAAA 784
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 721 CGCATCTTTGTTGTTCATGTGAATCCTGATTCGGGTTTAAACATATACTCTGTCGCCAAA 780
Query 785 TCTCTTGGAATGATGGGAAGTGGCTATGTCTGGATCACTACTGATTGGCTTCTTACAGCT 844
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 781 TCTCTTGGAATGATGGGAAGTGGCTATGTCTGGATCACCACTGATTGGCTTCTTACAGCT 840
Query 845 TTGGATTCCATGGAACCGTTGGATCCCAGAGCTTTGGATCTCTTGCAAGGAGTGGTTGCA 904
|||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||
Sbjct 841 TTGGATTCCATGGAACCGTTGGATACCAAAGCTATGGATCTCTTGCAAGGAGTGGTTGCA 900
Query 905 TTTCGTCATTACACACCTGAGAGTGACAACAAGAGACAGTTTAAAGGAAGATGGAAAAAC 964
||| |||||||||||||||||||||||||||| | || |||||||| |||||||||||||
Sbjct 901 TTTGGTCATTACACACCTGAGAGTGACAACAAAAAACGGTTTAAAGCAAGATGGAAAAAC 960
Query 965 CTTAGATTCAAGGAGAGTCTAAAAAGTGATGATGGCTTCAATTCTTACGCGCTGTATGCT 1024
||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 961 CTTAGATCCAAGGAGAGTTTAAAAAGTGATGACGGCTTCAATTCTTACGCGCTGTATGCT 1020
Query 1025 TACGATTCTGTTTGGTTGGTAGCTCGCGCTCTCGATGTTTTCTTCAGCCAAGGCAATACA 1084
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1021 TACGATTCTGTTTGGTTGGTAGCTCATGCTCTCGATGTTTTCTTCAGCCAAGGCAATACA 1080
Query 1085 GTGACTTTCTCTAATGATCCAAGTCTGAGGAATACCAACGATAGCGGCATTAAGCTATCA 1144
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1081 GTGACTTTCTCTAATGATCCAAATCTGAGGAATACCAACGATAGCAACATTAAGCTATCA 1140
Query 1145 AAACTTCACATTTTCAATGAAGGGGAGAGGTTCTTGCAGGTCATTCTTGAGATGAATTAT 1204
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AAACTTAACATTTTCAATGAAGGGGAGAGGTTCTTGCAGGTCATTCTTGAGATGAATTAT 1200
Query 1205 ACAGGTCTGACTGGACAAATCGAGTTTAATTCAGAGAAAAACCGGATTAATCCAGCCTAC 1264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 ACAGGTCTGACTGGACAAATCGAGTTTAATTCAGAGAAAAACCGGATTAATCCAGCCTAC 1260
Query 1265 GACATTCTGAACATAAAAAGTACAGGTCCACTGAGAGTTGGATACTGGTCGAATCATACA 1324
|||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1261 GACATTCTAAACATAAAAAGTACAGGTCCACAGAGAGTTGGGTACTGGTCGAATCATACA 1320
Query 1325 GGTTTCTCAGTCGCGCCTCCAGAGACATTATACTCTAAGCCTTCAAACACATCTGCAAAA 1384
||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GGTTTCTCAGTTGTGCCTCCGGAGACATTATACTCTAAGCCTTCAAACACATCTGCAAAA 1380
Query 1385 GACCAACGTCTTAATGAGATCATATGGCCAGGGGAAGTAATAAAGCCACCTCGGGGTTGG 1444
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 AACCAACGTCTTAATGAGATCATATGGCCAGGGGAAGTAATAAAGCCACCTCGGGGTTGG 1440
Query 1445 GTTTTCCCTGAAAATGGAAAGCCGCTGAAAATCGGGGTGCCTAACCGTGTAAGCTACAAA 1504
||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1441 GTTTTCCCTGACAATGGAAAGCCTCTGAAAATCGGGGTGCCTAACCGTGTGAGCTACAAA 1500
Query 1505 AACTATGCTTCTAAGGACAAGAACCCGCTTGGTGTTAAAGGCTTTTGCATCGACATCTTT 1564
|||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||
Sbjct 1501 AACTATGCTTCTAAGGACAAGAACCCACTTGGTGTTAAAGGCTATTGCATTGACATCTTT 1560
Query 1565 GAAGCTGCGATTCAATTGCTTCCATATCCCGTTCCACGTACTTATATACTATATGGGGAC 1624
||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1561 GAAGCTGCGGTTCAATTGCTTCCATATCCCGTTCCACGTACTTACATACTATACGGGGAC 1620
Query 1625 GGGAAGAAAAATCCTTCATATGACAATCTCATAAGTGAAGTTGCTGCAAATATTTTCGAT 1684
|||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||
Sbjct 1621 GGGAAGAAAAATCCTTCATATGACAACCTCATAAGTGAAGTTGCTGAAAATAGTTTCGAT 1680
Query 1685 GTAGCTGTTGGGGATGTTACCATCATTACAAACAGAACCAAGTTTGTAGATTTCACGCAG 1744
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1681 GCAGCTGTTGGGGATGTTACCATTATTACAAACAGAACCAAGTTTGTAGATTTCACGCAG 1740
Query 1745 CCATTTATAGAATCAGGGCTTGTGGTG 1771
|||||||||||||||||||||||||||
Sbjct 1741 CCATTTATAGAATCAGGGCTTGTGGTG 1767
Score = 1245 bits (674), Expect = 0.0
Identities = 747/783 (95%), Gaps = 2/783 (0%)
Strand=Plus/Plus
Query 1950 AGCTAACATCTCGGATAGAAGGAATGGACACTTTAATAGCAAGCAACGAACCCATTGGAG 2009
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2096 AGCTAACATCTCGGATAGAAGGAATGGACACTCTAATAGCAAGCAACGAACCCATTGGAG 2155
Query 2010 TCCAAGATGGTACCTTTGCGTGGAAATTTCTGGTCAATGAACTTAACATAGCTCCATCAA 2069
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2156 TCCAAGATGGTACCTTTGCGTGGAAATATCTGGTCAATGAACTTAACATAGCTCCATCAA 2215
Query 2070 GAATCATTCCGCTTAAAGACGAAGAAGAATATCTCTCTGCTCTTCAACGTGGTCCCAGAG 2129
|||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2216 GAATCATTCCACTGAAAGATGAAGAAGAATATCTCTCTGCTCTTCAACGTGGTCCCAGAG 2275
Query 2130 GCGGTGGCGTGGCAGCCATTGTCGACGAGCTTCCTTACATTAAAGCTCTCTTGTCAAACA 2189
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2276 ACGGTGGTGTGGCAGCCATTGTCGACGAGCTTCCTTACATTAAAGCTCTCTTGTCAAACA 2335
Query 2190 GCAACTGCAAGTTTCGAACAGTTGGACAGGAATTCACTCGGACAGGCTGGGGATTTGCGT 2249
||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2336 GCAACTGCAAGTTCCGTACAGTTGGACAGGAATTCACCCGGACAGGCTGGGGATTTGCGT 2395
Query 2250 TCCAGAGAGACTCTCCTCTAGCTGTGGACATGTCGACAGCGATCCTGCAACTGGCTGAAG 2309
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2396 TCCAGAGAGACTCTCCTCTAGCTGTGGACATGTCGACTGCGATCCTGCAACTGGCTGAAG 2455
Query 2310 AAGGAAAACTCGAGAAAATCCGCAAGAAATGGCTTACCTACGACCACGAATGTACAATGC 2369
|||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 2456 AAGGAAAACTCGAGAAAATCCGCAAGAAATGGCTTACCTATGACCACGAGTGCACAATGC 2515
Query 2370 AGATTTCAGATACAGAAAACTATCAAATATCGGTACAGAGTTTCTGGGGACTCTTCCTAA 2429
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2516 AGATTTCAGACACAGAAAACTATCAAATCTCGGTACAGAGTTTCTGGGGACTCTTCCTAA 2575
Query 2430 TATGTGGCGTCGTTTGGTTCATTGCACTCACACTCTTCTGCTGGAAAGTTTTCTGGCAAT 2489
| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2576 TCTGTGGCATCGTTTGGTTCATTGCACTAACACTCTTCTGCTGGAAAGTTTTCTGGCAAT 2635
Query 2490 ACCAACGGTTAAGACCAGAAGAGAGTGATGAAGTACAGGCGAGGAGCGAGGAGGCTGGTT 2549
|||||||||||||||||||||| ||||||| |||| |||||||||||||||||| ||||
Sbjct 2636 ACCAACGGTTAAGACCAGAAGAAAGTGATGGGGTACGGGCGAGGAGCGAGGAGGCGGGTT 2695
Query 2550 CTTCTAGAGGGAAAAGTTTGAGAGCAGTGAGTTTCAAGGATTTGATCAAAGTTGTTGATA 2609
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 2696 CTTCTAGAGGGAAAAGTTTGAGAACGGTGAGTTTCAAGGATTTGATCAAAGTTGTTGATA 2755
Query 2610 AGAGAGAAGCAGAGATTAAGGAGATGCTTAAGGAGAAGAGCAGTAAGAAACTCAAAG-AT 2668
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 2756 AGAGAGAAGCAGAGATCAAGGAGATGCTTAAGGAGAAGAGCAGTAAGAAACTCAAAGCA- 2814
Query 2669 GGCCAAAGTTCAGCTGAGAATTCGCAGTCGAAAGATCACGAAACTCCACAGTGAGATATA 2728
|||||||| | || ||||||||||||||| ||||||||||||||||||| || ||||| |
Sbjct 2815 GGCCAAAGGTGAGGTGAGAATTCGCAGTCAAAAGATCACGAAACTCCACGGTTAGATAGA 2874
Query 2729 TAA 2731
|||
Sbjct 2875 TAA 2877
Score = 183 bits (99), Expect = 4e-45
Identities = 114/121 (94%), Gaps = 1/121 (1%)
Strand=Plus/Plus
Query 1764 TTG-TGGTGCCGTCATCTGGATTCTTGAACATCGATTTAACGAAGAATTCCGCGGACCTC 1822
||| ||| |||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct 1862 TTGTTGGAGCCGTCATTTGGATTCTTGAACACCGCTTTAACGAAGAATTCCGCGGACCTC 1921
Query 1823 CTAGGCGTCAAATCATTACAGTCTTCTGGTTTAGCTTCTCAACAATGTTCTTCTCTCACA 1882
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1922 CTAGGCGTCAAATCATTACCGTCTTCTGGTTTAGCTTCTCTACAATGTTCTTCTCTCACA 1981
Query 1883 G 1883
|
Sbjct 1982 G 1982
> Ahg470513 jgi|Araly1|470513|fgenesh2_kg.1__467__AT1G05200.2
Length=3278
Score = 1352 bits (732), Expect = 0.0
Identities = 1359/1655 (82%), Gaps = 70/1655 (4%)
Strand=Plus/Plus
Query 142 GCCAAGCTCTGTAAACGTTGGAGCTCTGTTTACTTATGATTCTTTCATTGGAAGAGCGGC 201
|||||||||||| || ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 428 GCCAAGCTCTGTGAATGTTGGAGCTCTGTTTACTTATGATTCTTTTATCGGAAGAGCGGC 487
Query 202 CAAACTTGCGTTTGTGGCGGCCATTGAAGACATTAATGCTGACC-AGAGTATCCTCAGGG 260
|||| |||||| | ||||| || || || |||||||||||| | | | | || | ||
Sbjct 488 TAAACCCGCGTTTATAGCGGCAATGGATGATGTTAATGCTGACCTA-ACTGTACTTAAGG 546
Query 261 GCACCAAGCTTAATATTGTCTTCCAGGACACTAATTGCAGTGGATTTGTTGGCACCATGG 320
||| ||||||||||||||| || || ||| | ||||||||||||||| | ||||||||||
Sbjct 547 GCATCAAGCTTAATATTGTTTTTCAAGACTCAAATTGCAGTGGATTTATAGGCACCATGG 606
Query 321 GAGCTTTGCAGCTAATGGAGAACAAGGTGGTTGCAGCCATTGGTCCACAATCTTCAGGAA 380
||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 607 GAGCTTTGCAGCTGATGGAAAACAAAGTGGTTGCAGCCATTGGTCCACAATCTTCAGGGA 666
Query 381 TTGGTCACATAATCTCCCATGTAGCTAATGAGCTTCATGTACCTTTCTTGTCATTTGCAG 440
||| |||||| |||||| ||||| |||||||||||||||||||| |||||||||||| ||
Sbjct 667 TTGCTCACATGATCTCCTATGTATCTAATGAGCTTCATGTACCTCTCTTGTCATTTGGAG 726
Query 441 CAACGGACCCGACTCTTTCTTCGCTTCAATACCCTTATTTCCTTCGTACCACACAGAATG 500
||||||| |||||||| || || || ||||| ||||||||||| || ||||| |||||||
Sbjct 727 CAACGGATCCGACTCTCTCCTCTCTGCAATATCCTTATTTCCTCCGCACCACGCAGAATG 786
Query 501 ATTACTTCCAGATGAATGCAATCACGGATTTTGTATCCTATTTTCG-ATGGAGAGAAGTT 559
|||||||||| ||| |||||||| | |||||| |||| |||| || ||||||| ||||
Sbjct 787 ATTACTTCCAAATGCATGCAATCGCAGATTTTCTATCATATTC-CGGATGGAGACAAGTC 845
Query 560 GTTGCGATCTTTGTGGATGATGAGTATGGTAGGAATGGAATATCTGTAT-TAGGTGATGC 618
||||||| || | |||||||| | ||||||||| || |||||||| | |||| ||||
Sbjct 846 ATTGCGATATTCATTGATGATGAATGTGGTAGGAACGGGATATCTGT-TCTAGGCGATG- 903
Query 619 T-TTAGCCAAGAAACG-TGCCAAGATCTCTTACAAGGCTGCATTTCCACCTGGTGCAGAT 676
| |||||||||||||| | ||| ||||||||||||||||||| || | ||||||||||||
Sbjct 904 TATTAGCCAAGAAACGCT-CCAGGATCTCTTACAAGGCTGCAATTACTCCTGGTGCAGAT 962
Query 677 AATAGCTCAATCA-GTGATTTATTGGCTTCTGTTAATCTGATGGAATCTCGCATCTTTGT 735
|||||| |||| | || || |||| |||||||||||||||||||||||| | |||||
Sbjct 963 TCTAGCTCCATCAAG-GACTTGTTGGTTTCTGTTAATCTGATGGAATCTCGGGTTTTTGT 1021
Query 736 TGTTCATGTGAATCCTGATTCGGGTTTAAACATATTCTCTGTCGCCAAATCTCTTGGAAT 795
|||||||||||||||||| || ||||||||| | |||||||| || ||||||||||||||
Sbjct 1022 TGTTCATGTGAATCCTGACTCTGGTTTAAACGTTTTCTCTGTGGCTAAATCTCTTGGAAT 1081
Query 796 GATGGGAAGTGGCTATGTCTGGATCACTACTGATTGGCTTCTTACAGCTTTGGATTCCAT 855
|||||||||||| ||||| |||||| | || || ||||||| ||||||| ||||||||||
Sbjct 1082 GATGGGAAGTGGTTATGTTTGGATCGCAACAGACTGGCTTCCTACAGCTATGGATTCCAT 1141
Query 856 GGAAC-CGTTGGATCCC-AGAGCTTTGGATCTCTTGCAAGGAGTGGTTGCATTTCGTCAT 913
||| | ||| |||| || | | | ||||||||||||||||||||||||| ||||| |||
Sbjct 1142 GGAGCACGT-GGATTCCGACA-CGATGGATCTCTTGCAAGGAGTGGTTGCTTTTCGCCAT 1199
Query 914 TACACACCTGAGAGT-GACAACAAGAGACAGTTTAAAG-GAAGATGGAAAAACCTTAGAT 971
|||||| ||||||| | ||||||||||||| | || |||||| | ||||||
Sbjct 1200 TACACAATTGAGAGTAGTGTG-AAGAGACAGTTTATGGCGA-GATGGAGGAGTCTTAGAC 1257
Query 972 TCAAGGAGAGTCTAAAAAGTGATGATGGCTTCAATTCTTACGCGCTGTATGCTTACGATT 1031
| | || ||||| | |||||| ||||||||| |||| ||||| ||||
Sbjct 1258 -C---------C-AA----TGATG--G-CTTCAACTCTTACGCGATGTACGCTTATGATT 1299
Query 1032 CTGTTTGGTTGGTAGCTCGCGCTCTCGATGTTTTCTTCAGCCAAGGCAATACAGTGACTT 1091
|||| ||||| || ||||| || ||||||||||||||||| || ||||| | | ||||
Sbjct 1300 CTGTCTGGTTAGTTGCTCGTGCCCTCGATGTTTTCTTCAGAGAAAACAATAAAATAACTT 1359
Query 1092 TCTCTAATGATCCAAGTCTG-AGGAATACCAACGATAGCGGCA-TTAAGCTATCAAAACT 1149
|||| || ||||||| ||| | || ||||| | |||| || || |||||||| |||
Sbjct 1360 TCTCCAACGATCCAAATCTACACAAA-ACCAATGGTAGCA-CAATTCAGCTATCAGCACT 1417
Query 1150 TCACA-TTTTCAATGAAGGGGAGAGGTTCT-TGCAGGTCATTCTTGAGATGAATTATACA 1207
| |||||||||||||||||| ||| | || || ||||||||| ||||||| ||||
Sbjct 1418 A-AGTGTTTTCAATGAAGGGGAGAAGTT-TATGAAGATCATTCTTGGGATGAATCATACT 1475
Query 1208 GGTCTGACTGGACAAATCGAGTTTAATTCAGAGAAAAACCGGATTAATCCAGCCTACGAC 1267
||| |||| || | |||| ||||| ||||||| | ||||||| |||| || || || ||
Sbjct 1476 GGTGTGACGGGCCCAATCCAGTTTGATTCAGATAGAAACCGGGTTAACCCGGCTTATGA- 1534
Query 1268 A-TTCTGAACATAAAAAGTACAGGTCCACTG-AGAGTTGGATACTGGTCGAATCATACAG 1325
| |||| ||| || || |||||||||||| | | ||| || |||||||| |||||| | |
Sbjct 1535 AGTTCTAAACTTAGAAGGTACAGGTCCAC-GCACAGTCGGGTACTGGTCAAATCATTCGG 1593
Query 1326 GTTTCTCAGTCGCGCC-TCCAGAGACATTATACTCTAAGCCTTCAAACACATCTGCAA-A 1383
|| |||| || | || ||||||||| || |||||||||||| ||||||||||| || |
Sbjct 1594 GTCTCTCTGTGGT-CCATCCAGAGACCTTGTACTCTAAGCCTCCAAACACATCTACAGCA 1652
Query 1384 AGACCAACGTCTTAATGAGA-TCATATGGCCAGGGGAAGTAA-TAAAGCCACCTCGGGGT 1441
| |||| |||||| ||| || ||||||||||||| ||||||| ||| ||| ||||| |||
Sbjct 1653 A-ACCAGCGTCTTCATG-GAATCATATGGCCAGGCGAAGTAACTAA-GCCTCCTCGTGGT 1709
Query 1442 TGGGT-TTTCCCTGAA-AATGGAAAGCCGCTGAAAATCGGGGTGCCTAACCGTGTAAGCT 1499
||||| ||||| | || |||||||| ||||| | ||||||||||||||||||||| ||||
Sbjct 1710 TGGGTGTTTCC-T-AATAATGGAAAACCGCTCAGAATCGGGGTGCCTAACCGTGTGAGCT 1767
Query 1500 ACAAA-AACTATGCTTCTAAGGACAAGAACCCGCTTGGTGTTAAAGGCTTTTGCATCGAC 1558
| | | || || | ||||||||| |||||||||| ||| |||| ||||| ||||| ||
Sbjct 1768 ATACAGAA-TACGTTTCTAAGGATAAGAACCCGCCTGGCGTTAGAGGCTACTGCATTGAT 1826
Query 1559 ATCTTTGAAGCTGCGATTCAATTGCTTCCATATCCCGTTCCACGTACTTATATACTATAT 1618
|||||||||| || ||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1827 GTCTTTGAAGCCGCAATTGAATTGCTTCCATATCCTGTTCCACGTACTTATATACTATAT 1886
Query 1619 GGGGACGGGAAGAAAAATCCTTCATATGACAATCTCAT-AAGTGAAGTTGCTGCAAATA- 1676
|| |||||||||| ||||||||| || || |||||| | || |||||| | |||| |||
Sbjct 1887 GGAGACGGGAAGAGAAATCCTTCTTACGATAATCTCGTCAA-TGAAGTGGTTGCAGATAA 1945
Query 1677 TTTTCGATGTAGCTGTTGGGGATGTTACCATCATTACAAACAGAACCAAGTT-TGTAGAT 1735
|||| ||||||||||| || ||| | || ||| ||||||||||||| ||| | |||||||
Sbjct 1946 TTTT-GATGTAGCTGTAGGAGATATCACAATCGTTACAAACAGAAC-AAGATATGTAGAT 2003
Query 1736 TTCACGCAGCCATTTATAGAATCAGGGCTTGTGGT 1770
||||| || || |||||||||||||||||||||||
Sbjct 2004 TTCACACAACCGTTTATAGAATCAGGGCTTGTGGT 2038
> Ahg932642 jgi|Araly1|932642|scaffold_400630.1
Length=196
Score = 244 bits (132), Expect = 2e-63
Identities = 154/165 (93%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 492 CACAGAATGATTACTTCCAGATGAATGCAATCACGGATTTTGTATCCTATTTTCGATGGA 551
||||||| || ||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1 CACAGAACGACTACTTCCAGATGAATGCAATCGCGGATTTTGTATCCTATTTCCGATGGA 60
Query 552 GAGAAGTTGTTGCGATCTTTGTGGATGATGAGTATGGTAGGAATGGAATATCTGTATTAG 611
|||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 61 GAGAAGTTGTTGTGATCTTTGTGGATGATGAGTATGGTAGGAACGGGATATCTGTATTAG 120
Query 612 GTGATGCTTTAGCCAAGAAACGTGCCAAGATCTCTTACAAGGCTG 656
| |||| |||||| |||||||||||||||||||| ||||||||||
Sbjct 121 GCGATGTTTTAGCAAAGAAACGTGCCAAGATCTCATACAAGGCTG 165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103719737135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5