BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32410.1
Length=1896
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933807 jgi|Araly1|933807|scaffold_401795.1 2490 0.0
> Ahg933807 jgi|Araly1|933807|scaffold_401795.1
Length=1612
Score = 2490 bits (1348), Expect = 0.0
Identities = 1528/1616 (95%), Gaps = 8/1616 (0%)
Strand=Plus/Plus
Query 90 GACTCGAGCACGAACCAACAATGGCGGAACCCAAAACCAAGTATGATCGTCAGCTAAGGA 149
|||||||||| ||||||||||||||||||||||| |||||||| |||||||| || ||||
Sbjct 1 GACTCGAGCAAGAACCAACAATGGCGGAACCCAAGACCAAGTACGATCGTCAACTCAGGA 60
Query 150 TTTGGGGAGAATTAGGTCAATCAGCTCTTGAAACCGCGAGCATATGTTTGCTCAATTGTG 209
||||||||||| |||||||||| |||||||||| ||||||||| ||||||||||||||||
Sbjct 61 TTTGGGGAGAACTAGGTCAATCGGCTCTTGAAAACGCGAGCATCTGTTTGCTCAATTGTG 120
Query 210 GTCCAACTGGCTCTGAGGCTCTAAAGAATCTTGTTATTGGTGGAATCGGAAGTATCACCA 269
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 GCCCAACTGGCTCTGAGGCTCTAAAGAATCTTGTTCTTGGTGGAATCGGAAGTATCACCA 180
Query 270 TTGTCGACGGATCTAAAGTAGAAATTGGCGACCTTGGAAACAATTTCATGGTGGATGCGA 329
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCGTTGACGGATCTAAAGTAGAAATTGGCGACCTTGGAAACAATTTCATGGTGGATGCGA 240
Query 330 AGAGCGTTGGTCAGTCAAGAGCCAAAACGGTCTGTGGCTTTCTTCAGGAGCTTAACGATT 389
|||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||
Sbjct 241 AGAGCGTTGGTCAGTCAAAAGCCAAAACTGTCTGTGGCTTTCTTCAGGAGATTAACGATG 300
Query 390 CTGTTAAAGCAAATTTTGTTGAGGAGAATCCAGACACTTTGATATCGACAGACCCATCTT 449
|||||||| |||| ||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 301 CTGTTAAATCAAACTTTGTTGAGGAGAATCCAGACACATTGATTTCGACTGACCCATCTT 360
Query 450 TCTTCTCTCAGTTCACTCTAGTTATCGCCACTCAGCTAGTAGAAGATTCAATGGTGAAAT 509
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 361 TCTTCTCTCAGTTCACTCTAGTTATCGCCACTCAGCTAGTGGAAGATTCAATGGTGAAAT 420
Query 510 TAGATAGAATCTGCCGGGAAGCAAACGTCATGTTGGTTTTGGCTCGCTCCTATGGACTTA 569
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 421 TAGATAGAATCTGCCGGGAAGCAAAGGTCATGTTGGTTTTGGCTCGCTCCTATGGCCTTA 480
Query 570 CTGGGTTTGTTCGTATCAGTGTAAAGGAACACACCGCTATTGAGACAAAGCCTGATCATT 629
||||||||||||||||| |||||||||| ||||||||||| ||| |||||||||||||||
Sbjct 481 CTGGGTTTGTTCGTATCTGTGTAAAGGAGCACACCGCTATCGAGTCAAAGCCTGATCATT 540
Query 630 CTCTTGATGATCTCCGCTTGAATAGTCCATGGCCTGAGCTGAAGAGCTATGTGGAGTCCA 689
|||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||
Sbjct 541 CTCTTGATGATCTCCGCTTGAATAATCCATGGCCTGAACTGAAGAGGTATGTGGAGTCCA 600
Query 690 TTGATCTAAATGTAGAAGAACCCGCTGCCCATAAGCACATTCCTTACGTCGTCATTCTAG 749
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTGATTTAAATGTAGAAGAACCCGCTGCCCATAAGCACATTCCTTACGTCGTCATTCTAG 660
Query 750 TCAAGGTGGCTGAAGAATGGGCTC-AACACCATAGCGGCAACCTTCCATCAACCAGGGAA 808
|||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||
Sbjct 661 TCAAGGTGGCTGAAGAATGGGCTCAAAC-CCATAGCAGCAACCTTCCATCAACCAGGGAA 719
Query 809 GAGAAAAACGAGTTTAAGGACTTAGTTAAGTCCAAGATGGTATCAGCGGATGAAGAAAAT 868
|||||||||||||||||||| ||||||||||||||||||| |||| |||||||||| ||
Sbjct 720 GAGAAAAACGAGTTTAAGGATTTAGTTAAGTCCAAGATGGCATCAACGGATGAAGATAAC 779
Query 869 TACAAAGAAGCCCTTCTTGCAGCTTTCAAAGTCTTTGCTCCTACAGGAATCAGCCAAGAG 928
|||||||||||| || | || ||||||||||| |||||||||| ||||||||||||||||
Sbjct 780 TACAAAGAAGCCATTGTAGCCGCTTTCAAAGTTTTTGCTCCTAGAGGAATCAGCCAAGAG 839
Query 929 ATTCAAGACATTAATCATGATAGTTGTGCTGAAGTTGGCTCAAATTCCTCAGATTTTTGG 988
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 840 ATTCAAGACATTATTCATGATAGATGTGCTGAAGTTGGCTCAAATTCCTCAGATTTTTGG 899
Query 989 GTAATGGTAGCAGCACTCAAGGAGTTTATTTCAAATGAAGGTGGTGGGGAGGTACCACTT 1048
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 900 GTAATGGTAGCAGCACTCAAGGAGTTTATTTCAAATGAAGGTGGTGGGGAGCCACCACTT 959
Query 1049 GAAGGTTCCATGCCTGATATGATATCTTCCACAGAGCACTACATCAATTTGCAGAAAATC 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GAAGGTTCCATGCCTGATATGATATCTTCCACAGAGCACTACATCAATTTGCAGAAAATC 1019
Query 1109 TACCATTCCAAAGCGGAAGCTGATTTTCTTTCCATGGAACAGAGAGTAAAAAGTATTCTA 1168
|||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1020 TACCATTCCAAAGCTGAAGCTGATTTTCTTTCCATGGAGCAGAGAGTAAAAAGCATTCTA 1079
Query 1169 GTTAAAGTTGGTCAGGATCCAAGTAGCATCTCAAAGCCAACTATCAAGAGCTTCTGCAAG 1228
|||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||
Sbjct 1080 GTTAAAGTTGGTCAGGATCCAAGTAGCATCCCAAAATCAACTATCAAGATCTTCTGCAAG 1139
Query 1229 AATGCACGAAAACTTAAAGTCTGCAGATAT-AGAACGATAGAAGACGAGTTCA-AAAGTC 1286
|||||| ||||||||||||||||||||||| | ||||||||| |||||||||| ||| ||
Sbjct 1140 AATGCAAGAAAACTTAAAGTCTGCAGATATCA-AACGATAGAGGACGAGTTCAGAAA-TC 1197
Query 1287 CTTCTACAACAGAACTACATAAGTACTTGGCTGATGAGAATTACAGTGGCGCAATTGGAT 1346
||||| |||||||||||||||||||||||||||||||| |||||||| | ||||||||||
Sbjct 1198 CTTCTGCAACAGAACTACATAAGTACTTGGCTGATGAGGATTACAGTAGTGCAATTGGAT 1257
Query 1347 TTTATATTCTTCTTAGAGCTGTTGATAGATTTGCTG-GTACCTATAAGAAGTTTCCTGGA 1405
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1258 TTTATATTCTTCTTAGAGCTGTTGATAGATTTGCTGCG-ACCTATAAGAAGTTTCCTGGA 1316
Query 1406 CAGTTTGATGGATCAACTGATGAGGACGCATCCCAGTTAAAGACTATTGCCCTGAGTCTT 1465
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1317 CAGTTTGATGGATCAACTGATGATGACGCATCCCAGTTAAAGACCATTGCCCTGAGTCTT 1376
Query 1466 CTTAGTGAAATGGGTTGTGACGGCTATGAACTTCAGGAAGAACTGTACAATGAGATGTGT 1525
||||| |||||||||||||||||||||| |||| |||||||||| || | ||||||||||
Sbjct 1377 CTTAGCGAAATGGGTTGTGACGGCTATGTACTTAAGGAAGAACTTTATAGTGAGATGTGT 1436
Query 1526 AGATTTGGTGCTGCAGAGATTCACGTGGTTGCTGCTTTAATAGGAGGAATCACATCTCAA 1585
|||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||
Sbjct 1437 AGATTTGGTGCTGCAGAGATTCACGTGGTTGCTGCTTTCATAGGAGGAGTCGCATCTCAA 1496
Query 1586 GAAGTGATCAAGCTCATCACAAAGCAGTTTGTTCCCAAGCGAGGAACTTTCATCTTCAAC 1645
|||||||||||||| ||||| |||||||||||||||| || |||||||||||||||||||
Sbjct 1497 GAAGTGATCAAGCTTATCACGAAGCAGTTTGTTCCCATGCTAGGAACTTTCATCTTCAAC 1556
Query 1646 GGCATTGATCACAAGTCTCAGTCTTTGACATTATAGAAGATTCTTAGACACTGGTG 1701
||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1557 GGCATTGATCACAGGTCTCAGTCTTTGAAATTATAAAAGATTCTTAGACACTGGTG 1612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71228758150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5