BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32430.1
Length=1960
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933809 jgi|Araly1|933809|scaffold_401797.1 2015 0.0
Ahg311603 jgi|Araly1|311603|fgenesh1_pm.C_scaffold_1000383 1214 0.0
> Ahg933809 jgi|Araly1|933809|scaffold_401797.1
Length=1270
Score = 2015 bits (1091), Expect = 0.0
Identities = 1210/1268 (95%), Gaps = 6/1268 (0%)
Strand=Plus/Plus
Query 316 TGAAGAGAATAAATAATGTCGACGAAGATCAAAGGAGAGCTTTTTCCCTCCAGAAGTTTA 375
||||||||| ||||||||||||||||||||||||||||||||||| | |||||||| |||
Sbjct 7 TGAAGAGAA-AAATAATGTCGACGAAGATCAAAGGAGAGCTTTTTTCGTCCAGAAGCTTA 65
Query 376 GTATCTAAAAAATGGACATTTTTACTCTGCTTTGGGAGCTTCTGCTTCGGAATATTATTC 435
||||| || |||||||||||||||||||||||||||||||||||||| || ||| | |||
Sbjct 66 GTATCCAAGAAATGGACATTTTTACTCTGCTTTGGGAGCTTCTGCTTTGGGATACTCTTC 125
Query 436 ACCGATAGGATGTGGATTATTCCGGAGTCTAAAGACATGCCTCGACCATCTGTAAGTACA 495
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 126 ACCGATAGGATGTGGATTATTCCAGAGTCTAAAGACATGTCTCGACCATCTGTAAGTACA 185
Query 496 GAAGCTGAAAGA-TTGAAGCTGATCTCTGAGGGCTGTGATCCGAAAACCCTCTACCAGAA 554
|||||||||||| || |||||||||||||||||||||||||| |||| |||||||||||
Sbjct 186 GAAGCTGAAAGACTT-AAGCTGATCTCTGAGGGCTGTGATCCCAAAAATCTCTACCAGAA 244
Query 555 AGAAGTAAATCGTGATCCTCAGGCATTGTTTGGAGAAGTTTCCAAGACTCATAACGCTAT 614
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||
Sbjct 245 AGAAGTAAATCGTGATCCTCAGGCTTTGCTTGGAGAAGTTTCCAAGACTCATAATGCTAT 304
Query 615 ACAGACATTGGATAAGACTATTTCAAGCTTAGAGATGGAGTTAGCTGCAGCAAGATCGGC 674
|||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 305 ACAGACATTGGATAAGACCATTTCAAGTTTAGAGATGGAGTTAGCCGCAGCAAGATCAGC 364
Query 675 TCAGGAGTCTTTAG-TAAACGGTGCTCCTATATCTAATGATATGGAGAAGAAGCAATTAC 733
||||||||||| | |||||||||||||||| || |||||| ||||||||||||||||||
Sbjct 365 ACAGGAGTCTTT-GATAAACGGTGCTCCTATGTCGAATGATGTGGAGAAGAAGCAATTAC 423
Query 734 CGGGGAAAAGACGGTATTTGATGGTTGTAGGGATTAATACTGCTTTTAGTAGCCGAAAGA 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 CGGGGAAAAGACGGTATTTGATGGTTGTAGGGATTAATACTGCTTTTAGTAGCCGAAAGA 483
Query 794 GAAGAGATTCTGTTCGAACAACTTGGATGCCTTCAGGTGAGAAAAGAAAGAAGTTGGAAG 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 484 GAAGAGATTCTGTTCGAACAACTTGGATGCCTTCAGGTGAGAAAAGAAAGAAGTTAGAGG 543
Query 854 AAGAGAAGGGAATTATTATACGGTTTGTGATTGGTCATAGTGCCACGGCTGGCGGAATTC 913
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 544 AAGAGAAGGGAATTATTATACGGTTTGTGATTGGTCATAGTGCCACCGCCGGCGGAATTC 603
Query 914 TAGACCGATCCATTGAAGCAGAGGACAAGAAGCATGGAGATTTCTTGAGATTGGACCATG 973
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 604 TAGACCGATCCATTGAAGCAGAGGATAGGAAGCATGGAGATTTCTTGAGATTGGACCATG 663
Query 974 TTGAAGGATACCTTGAGTTATCAGGCAAAACGAAAACATATTTTTCTACAGCTGTTTCGA 1033
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 664 TTGAAGGATACCTTGAGTTATCAGGCAAAACGAAAACATATTTTTCTACCGCTGTTTCAA 723
Query 1034 AGTGGGATGCAGAGTTCTATGTCAAAGTAGATGATGATGTTCATGTAAATATCGCAACTC 1093
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 AGTGGGATGCAGAATTCTATGTCAAAGTAGATGATGATGTTCATGTAAATATCGCAACTC 783
Query 1094 TTGGGGAAACTCTTGTTAGACACAGGAAGAAACATCGAGTCTATCTCGGCTGCATGAAAT 1153
||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 784 TTGGGGAGACTCTTGTCAGACACAGGAAGAAACATCGAGTCTATATCGGCTGCATGAAAT 843
Query 1154 CTGGTCCAGTACTATCTCAAAAAGGAGTTAGATACCATGAGCCTGAGTATTGGAAATTTG 1213
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 844 CTGGTCCAGTCCTATCTCAAAAAGGAGTTAGATACCATGAGCCTGAATATTGGAAATTTG 903
Query 1214 GTGAGAATGGAAACAAGTACTTCCGTCACGCTACTGGACAGTTATACGCCATTTCTAGAG 1273
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 904 GTGAGAATGGAAACAAGTACTTCCGTCACGCTACTGGACAGTTATACGCCATTTCAAGAG 963
Query 1274 ACTTGGCTTCTTACATTTCCCTTAATCAGCATGTTCTGCACAAATATGCAAATGAGGATG 1333
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 ACTTGGCTTCTTACATTGCCCTTAATCAGCATGTTCTGCACAAATATGCAAATGAGGATG 1023
Query 1334 TTACATTAGGTGCTTGGTTTATCGGGCTTGATGTGACACATATCGATGATAGAAGACTAT 1393
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1024 TTACATTAGGTGCTTGGTTTATCGGGCTTGATGTTACACATATCGATGATAGAAGACTAT 1083
Query 1394 GTTGTGGCACTCCTCCTGATTGTGAATGGAAGGCACAAGCAGGCAACATATGTGTAGCTT 1453
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 GTTGCGGCACTCCTCCGGATTGTGAATGGAAGGCACAAGCAGGCAACATATGTGTAGCTT 1143
Query 1454 CATTCGACTGGACGTGTAGCGGTATCTGCAGATCAGCTGATCGGATAAAAGAGGTTCACA 1513
|||| |||||||| ||||| ||||||||||||||||||||||| || ||||| |||||||
Sbjct 1144 CATTTGACTGGACCTGTAGTGGTATCTGCAGATCAGCTGATCGAATTAAAGAAGTTCACA 1203
Query 1514 AGCGATGTGGTGAACCGGAAAACGCTATTTGGAAAGCCAGATTTTGAGGCCCTTCCACTA 1573
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1204 AGCGATGTGGTGAACCAGAAAACGCTATTTGGAAAGCCAGATTTTGAGGCC-TTCCACAA 1262
Query 1574 CATATACA 1581
||||||||
Sbjct 1263 CATATACA 1270
> Ahg311603 jgi|Araly1|311603|fgenesh1_pm.C_scaffold_1000383
Length=1224
Score = 1214 bits (657), Expect = 0.0
Identities = 1052/1242 (85%), Gaps = 30/1242 (2%)
Strand=Plus/Plus
Query 331 ATGTCGACGAAGATCAAAGGAGAGCTTTTTCCCTCCAGAAGTTTAGTATCTAAAAAATGG 390
||||||||||||| ||||||||| | || | || ||||| || ||||| | |||||||
Sbjct 1 ATGTCGACGAAGAACAAAGGAGA--ATATT-CTTCTAGAAGCTTCGTATCGAGAAAATGG 57
Query 391 AC-ATTTTTACTCTGCTTTGGGAGCTTCTGCTTCGGAATATTATTCACCGATAGGATGTG 449
|| | | ||||||||||| || ||||||||| ||||||| || ||||||||| |||||||
Sbjct 58 ACGA-TATTACTCTGCTTAGGAAGCTTCTGCGTCGGAATGTTCTTCACCGATCGGATGTG 116
Query 450 GATTATTCCGGAGTCTAAAGACATGCCTCGACCATCTGTAAGTACAGAAGCTGAAAGATT 509
|| ||||||||| ||||||| |||| |||| |||||||| | || |||||||| |||||
Sbjct 117 GAATATTCCGGAATCTAAAGGCATGTCTCGTCCATCTGT-A--ACCGAAGCTGAGAGATT 173
Query 510 GAAGCTGATCTCTGAGGGCTGTGATCCGAAAACCCTCTACCAGAAAGAAGT-AAATCGTG 568
||| ||||||||||| ||||| |||| ||||| || |||||||||||||| ||| | |
Sbjct 174 GAAACTGATCTCTGAAGGCTGCAATCCAAAAACTCTTTACCAGAAAGAAGTCAAA-AGAG 232
Query 569 ATCCTCAGGCATTGTTTGGAGAAGTTTCCAAGACTCATAACGCTA-TACAGACATTGGAT 627
|||||||||| |||||||||||||| |||| || |||| || | ||||||||||||||
Sbjct 233 ATCCTCAGGCTTTGTTTGGAGAAGTAGCCAATACACATATTGC-ATTACAGACATTGGAT 291
Query 628 AAGACTATTTCAAGCTTAGAGATGGAGTTAGCTGCAGCAAGATCGGCTCAGGAGTCTTTA 687
||||| |||||||||||||||||||||||||||||||| || || | |||||| ||||||
Sbjct 292 AAGACCATTTCAAGCTTAGAGATGGAGTTAGCTGCAGCTAGGTCAGTTCAGGAATCTTTA 351
Query 688 GTAAACGGTGCTCCTATATCTA-ATGATATGGAGAAGAAGCAATTACCGGGGAAA-AGAC 745
||||||||||||| |||| | ||||||||| |||||||||| | ||| ||| ||||
Sbjct 352 CAAAACGGTGCTCCTGTATC-AGATGATATGGGGAAGAAGCAACCGCTGGG-AAAGAGAC 409
Query 746 GGTATTTGATGGTTGTAGGGATTAATACTGCTTTTAGTAGCCGAAAGAGAAGAGATTCTG 805
||| ||||||||| || ||||||||||| |||||||||||| |||||||||||||||||
Sbjct 410 GGTTTTTGATGGTCGTCGGGATTAATACAGCTTTTAGTAGCAGAAAGAGAAGAGATTCTA 469
Query 806 TTCGAACAACTTGGATGCCTTCA-GGTGAGAAAAGAAAGA-AGTTGGAAGAAGAGAAGGG 863
||||| |||| ||||||||| || ||||| ||||| |||| | | | |||| ||||||||
Sbjct 470 TTCGAGCAACGTGGATGCCT-CAAGGTGAAAAAAGGAAGAGACTAG-AAGAGGAGAAGGG 527
Query 864 AATTATTATACGGTTTGTGATTGGTCATAGTGCCACGGCTGGCGGAATTCTAGACCGATC 923
||||| || || || || |||||||| ||||||||| | || ||||||||||| ||| |
Sbjct 528 GATTATCATCCGATTCGTCATTGGTCACAGTGCCACGACCGGGGGAATTCTAGATCGAGC 587
Query 924 CATTGAAGCAGAGGACAAGAAGCATGGAGATTTCTTGAGATTGGACCATGTTGAAGGATA 983
|| ||||| ||||||| |||||||||||||||||||||| |||||||||||||||| ||
Sbjct 588 TATAGAAGCTGAGGACAGGAAGCATGGAGATTTCTTGAGACTGGACCATGTTGAAGGGTA 647
Query 984 CCTTGAGTTATCAGGCAAAACGAAAACATATTTTTCTACAGC-TGTTTCGAAGTGGGATG 1042
||| ||||| |||||||| |||||||| || ||||||||||| | |||| | ||||||||
Sbjct 648 CCTAGAGTTGTCAGGCAAGACGAAAACTTACTTTTCTACAGCAT-TTTCCATGTGGGATG 706
Query 1043 CAGAGTTCTATGTCAAAGTAGATGATGATGTTCATGTAAATATCGCAACTCTTGGGGAAA 1102
|||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 707 CAGATTTCTATGTCAAAGTAGATGATGATGTTCATGTCAATATAGCAACTCTTGGGGAAA 766
Query 1103 CTCTTGTTAGACACAGGAAGAAAC-ATCGAGTCTATCTCGGCTGCATGAAATCTGGTCCA 1161
||||||| |||||| |||| |||| | || |||||| | || |||||||||||||| ||
Sbjct 767 CTCTTGTCAGACACCGGAAAAAACCA-CGGGTCTATATTGGTTGCATGAAATCTGGCCCT 825
Query 1162 GTACTATCTCAAAAAGGAGTTAGATACCATGAGCCTGAGTATTGGAAATTTGGTGAGAAT 1221
|| || ||||||||||| || || ||||||||||| ||||| |||||||||||||| |||
Sbjct 826 GTCCTCTCTCAAAAAGGGGTGAGGTACCATGAGCCAGAGTACTGGAAATTTGGTGAAAAT 885
Query 1222 GGAAACAAGTACTTCCGTCACGCTACTGGACAGTTATACGCCATTTCTAGAGACTTGGCT 1281
|| ||||| ||||||||||| ||||||||||| |||||||||||||| || |||||||||
Sbjct 886 GGGAACAAATACTTCCGTCATGCTACTGGACAATTATACGCCATTTCAAGGGACTTGGCT 945
Query 1282 TCTTACATTTCCCTTAATCAGCATGTTCTGCACAAATATGCAAATGAGGATGTTACATTA 1341
||||| || || | |||||||||||||| ||||| ||||| || || |||||| | |||
Sbjct 946 TCTTATATATCAATCAATCAGCATGTTCTTCACAAGTATGCGAACGAAGATGTTTCGTTA 1005
Query 1342 GGTGCTTGGTTTATCGGGCTTGATGTGACACATATCGATGATAGAAGACTATGTTGTGGC 1401
|| ||||||||||| ||| ||||||| | ||| || ||||| |||||| |||| || ||
Sbjct 1006 GGAGCTTGGTTTATTGGGATTGATGTTAAACACATTGATGACAGAAGATTATGCTGCGGA 1065
Query 1402 ACTCCTCCTGATTGTGAATGGAAGGCACAAGCAGGCAACATATGTGTAGCTTCATTCGAC 1461
||||||||||||||||||||||| |||||||| || ||||| |||||||| |||||||||
Sbjct 1066 ACTCCTCCTGATTGTGAATGGAAAGCACAAGCTGGAAACATCTGTGTAGCATCATTCGAC 1125
Query 1462 TGGA-CGTGTAGCGGTATCTGCAGATCAGCTGATCGGATAAAAGAGGTTCA-CAAGCGAT 1519
|||| | || || || |||||||||||||| ||||| || ||||||||||| | | || |
Sbjct 1126 TGGAGC-TGCAGTGGAATCTGCAGATCAGCAGATCGCATCAAAGAGGTTCATCGA-CGTT 1183
Query 1520 GTGGTGAAC-CGGAAAACGCTATTTGGAAAGCCAGATTTTGA 1560
|||||||| || |||| ||| |||||| |||| |||||||
Sbjct 1184 GTGGTGAAGGCG-AAAAGGCTCTTTGGAGTGCCACATTTTGA 1224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73666533830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5