BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32440.1
Length=1787
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482171 jgi|Araly1|482171|fgenesh2_kg.4__1231__AT2G32440.1 2772 0.0
Ahg470506 jgi|Araly1|470506|fgenesh2_kg.1__460__AT1G05160.1 1094 0.0
> Ahg482171 jgi|Araly1|482171|fgenesh2_kg.4__1231__AT2G32440.1
Length=1791
Score = 2772 bits (1501), Expect = 0.0
Identities = 1701/1797 (95%), Gaps = 16/1797 (1%)
Strand=Plus/Plus
Query 1 CTATATGCAGGGTATGATATAACATCTAGAGGATACAAGAGGTGGTCAGGTGCAAAAGAT 60
|||| |||||||| ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1 CTATCTGCAGGGTTTGATATAACATCTAGAGGATACAAGAGGTGGTCAGTTGAAAAAGAT 60
Query 61 TGAGttttttttATAGGAGAGTGTTTACGACTGAAGCTATGACGGAAACGGGTTTGATTC 120
||| |||| || || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 TGA--AATTTTGATTGGGGAGTGTTTACGACTGAAGCTATGACGGAACCGGGTTTGATTC 118
Query 121 TCATGTGGTTCCCTTTGATAATATTGGGATTGTTTGTTTTGAAATGGGTGCTGAAGAGAG 180
| ||||||||||||||||| | ||||||||||||||||||||||||||| | ||||| |
Sbjct 119 TGATGTGGTTCCCTTTGATGGTTTTGGGATTGTTTGTTTTGAAATGGGTGTTAAAGAGTG 178
Query 181 TGAATGTTTGGATTTATGTGTCCAAACTTGGTGAGAAAAAACACTATCTGCCACCAGGTG 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TGAATGTTTGGATTTATGAGTCCAAACTTGGTGAGAAAAAACACTATCTGCCACCAGGTG 238
Query 241 ATTTGGGATGGCCAGTCATAGGCAACATGTGGTCCTTTCTTAGAGCTTTCAAAACATCTG 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 ATTTGGGATGGCCAATCATAGGCAACATGTGGTCCTTTCTTAGAGCTTTCAAAACATCTG 298
Query 301 ATCCTGAATCCTTCATCCAATCCTACATCACCAGGTATGGGCGTACCGGGATTTATAAAG 360
||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct 299 ATCCTGAATCCTTCATCCAATCCTACATCACAAGGTATGGGCGTACTGGTATTTATAAAG 358
Query 361 CACACATGTTTGGGTACCCATGTGTACTAGTAACAACACCAGAGACTTGTAGGCGAGTTC 420
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 359 CACACATGTTTGGGTACCCATGTGTACTAGTAACAACACCAGAGACTTGTCGACGAGTTC 418
Query 421 TAACAGATGATGATGCCTTCCACATAGGTTGGCCAAAATCTACCATGAAACTCATTGGCA 480
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TAACAGATGATGATGCCTTTCACATAGGTTGGCCAAAATCTACCATGAAACTCATTGGCA 478
Query 481 GGAAGTCCTTTGTTGGTATCTCCTTTGAAGAACACAAGAGGCTCAGGCGTTTGACTTCTG 540
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 479 GGAAGTCCTTTGTCGGTATCTCCTTTGAAGAACACAAGCGGCTCAGGCGTTTGACTTCTG 538
Query 541 CTCCTGTCAATGGCCCTGAAGCTCTCTCTGTATACATACAGTTCATTGAAGAAACTGTTA 600
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 539 CTCCTGTCAATGGCCCTGAAGCTCTCTCTGTCTACATACAATTCATTGAAGAAACTGTTA 598
Query 601 ATACTGATCTAGAAAAATGGTCCAAAATGGGAGAAATCGAGTTCTTATCTCATTTGCGTA 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTACTGATCTAGAAAAATGGTCCAAAATGGGAGAAATCGAGTTCTTATCTCATTTGCGTA 658
Query 661 AGCTTACGTTTAAGGTCATTATGTACATATTTCTCAGCAGTGAGAGTGAGCATGTCATGG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGCTTACGTTTAAGGTCATTATGTACATATTTCTCAGCAGTGAGAGTGAGCATGTCATGG 718
Query 721 ATTCATTGGAACGGGAGTATACCAACCTTAACTATGGAGTTCGAGCAATGGGTATTAATC 780
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ATGCATTGGAACGGGAATATACCAACCTTAACTATGGAGTTCGAGCAATGGGTATTAATC 778
Query 781 TTCCTGGGTTTGCTTATCATAGAGCTTTGAAGGCAAGGAAAAAACTTGTAGCTGCCTTTC 840
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 779 TTCCTGGGTTTGCTTATCATAGAGCTTTGAAGGCAAGGAAAAAGCTTGTAGCCGCCTTTC 838
Query 841 AGTCCATAGTGACTAACCGAAGAAATCAAAGGAAGCAGAATATTTCATCCAATAGAAAAG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AGTCCATAGTGACTAACCGAAGAAATCAAAGGAAGCAGAATATTTCATCCAATAGAAAAG 898
Query 901 ATATGCTGGATAATCTAATAGATGTTAAAGATGAAAACGGAAGAGTCTTAGATGATGAGG 960
| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 899 ACATGCTGGATAATCTAATAGATGTTAAAGATGAAAACGGAAGAGTTTTAGATGACGAGG 958
Query 961 AAATTATTGACCTTTTGTTGATGTATCTTAATGCGGGTCATGAATCTTCTGGACACCTCA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AAATTATTGACCTTTTGTTGATGTATCTTAATGCGGGTCATGAATCTTCTGGACACCTCA 1018
Query 1021 CTATGTGGGCTACCATTTTGATGCAAGAACACCCT-ATGATTCTGCAAAAGGCTAAGGAA 1079
||||||||||||||||||||||||||||||||||| | ||||| |||||||| ||||||
Sbjct 1019 CTATGTGGGCTACCATTTTGATGCAAGAACACCCTGAA-ATTCTACAAAAGGCAAAGGAA 1077
Query 1080 GAACAAGAGAGGATCGTAAAAAAGAGAGCACCGGGACAGAAGTTGACGCTTAAAGAGACA 1139
|| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1078 GAGCAAGAGAGGATCGTAAAAAACAGAGCGCCGGGACAGAAGTTGACGCTTAAAGAGACA 1137
Query 1140 CGTGAAATGGTGTATCTTTCTCAGGTTATTGATGAGACCCTTCGAGTAATTACATTCTCT 1199
|||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1138 CGTGAAATGGAGTATCTTTCTCAGGTTATTGATGAGACACTTCGAGTAATAACATTCTCT 1197
Query 1200 CTGACGGCCTTCAGGGAAGCAAAGAGTGATGTCCAAATGGATGGCTATATAATTCCAAAA 1259
|| ||||| ||| |||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 1198 CTTACGGCTTTCCGGGAAGCAAAGAGTGACGTCCAAATAGATGGCTATATCATTCCAAAA 1257
Query 1260 GGCTGGAAGGTTCTGACTTGGTTTAGGAACGTCCATTTGGACCCTGAAATCTACCCGGAT 1319
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1258 GGCTGGAAGGTTCTGACTTGGTTTAGGAACGTCCATTTGGACCCAGAGATCTACCCGGAT 1317
Query 1320 CCAAAGAAATTTGATCCTTCAAGATGGGAGGGATACACACCAAAAGCAGGCACATTCCTT 1379
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1318 CCAAAGAAATTTGATCCTTCAAGATGGCAGGGATACACACCAAAAGCAGGCACATTCCTT 1377
Query 1380 CCTTTTGGTTTGGGAAGCCACCTATGCCCGGGAAACGATCTTGCCAAGCTCGAGATTTCC 1439
||||||||||| |||||||| || ||||| |||||||||||||| |||||||||||||||
Sbjct 1378 CCTTTTGGTTTAGGAAGCCATCTCTGCCCTGGAAACGATCTTGCAAAGCTCGAGATTTCC 1437
Query 1440 ATTTTTCTTCATCATTTCCTCCTCAAATACCGGGTGGAAAGGAGCAATCCCGGATGTCCG 1499
||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 1438 ATTTTTCTTCATCATTTCCTCCTCAAATACCGGGTAGAAAGGAGCAATCCAGGGTGTCCG 1497
Query 1500 GTGATGTTCTTGCCTCACAATCGACCCAAAGATAATTGCCTAGCAAGAATCACCAGAACG 1559
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1498 GTGATGTTCTTGCCTCACAATCGACCCAAAGATAATTGCTTAGCAAGAATCACCAAAACG 1557
Query 1560 ATGCCATAATCATCATCTTCAAACTAGTAGACCCCTT-AGCAAATATATAAGCTTCGTCT 1618
| ||| ||||||||||||||||||||||||||||||| | |||||||||||||||| | |
Sbjct 1558 ACGCCGTAATCATCATCTTCAAACTAGTAGACCCCTTTACCAAATATATAAGCTTCTTTT 1617
Query 1619 CAGGTTTCCATTGTCTTCATCTTCTCTTAGAACTTGATCCAAACCGGTTCGGTTTGTGAA 1678
|||||||||||||||| | ||||||||||||||| ||||||||| ||| |||||||||||
Sbjct 1618 CAGGTTTCCATTGTCTCC-TCTTCTCTTAGAACTCGATCCAAACTGGTCCGGTTTGTGAA 1676
Query 1679 TTTGGTTTACTAGGA--TGTAT--CA--ATAGTTTGAAGGATTTGTC-AAAGTAATGTTG 1731
||||||||||||| | | ||| || |||||||||||||||| || |||||||||||
Sbjct 1677 TTTGGTTTACTAGCAAATATATGTCACCATAGTTTGAAGGATTT-TCCAAAGTAATGTTC 1735
Query 1732 AAATTTTTCT-CTGGTTTAGCTTCAAATTTGGTTATAAAAAAGTAAAATCGAATTTC 1787
||| ||| || ||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1736 AAACTTT-CTTCTGGTTTAGTTTCAAATTTGGTTATAAAAAAGCAAAATCGAATTTC 1791
> Ahg470506 jgi|Araly1|470506|fgenesh2_kg.1__460__AT1G05160.1
Length=2014
Score = 1094 bits (592), Expect = 0.0
Identities = 1210/1500 (81%), Gaps = 76/1500 (5%)
Strand=Plus/Plus
Query 94 AAGCTATGACGG--A-AACGGGTTTGATTCTCA-TGTGGTTCCCTTTGATAATATTGGGA 149
|||||||| ||| | |||| ||| || || || | ||||| ||| |||| | ||||||
Sbjct 294 AAGCTATGGCGGAAACAACGAGTTGGA-TCCCAGTATGGTTTCCTCTGATGGTGTTGGGA 352
Query 150 TTG-TTTGTTTTGAAATGGGTGCTGAAGA-GAGTGAATGTTTGGATTTATGTGTCCAAAC 207
|| |||| | |||| ||| || | |||| | |||||||| ||| | |||| ||||| |
Sbjct 353 -TGTTTTGGTCTGAATTGGTTGGTTAAGATG-GTGAATGTGTGGCTCTATGAGTCCAGCC 410
Query 208 TTGGTGAGAAAAAACACTATCTGCCACCAGGTGATTTGGGATGGCCAGTCATAGGCAACA 267
|||| ||||| | ||||||||||| |||||||||||||| ||||| |||| |||||||
Sbjct 411 TTGGGGAGAACAGGCACTATCTGCCGCCAGGTGATTTGGGTTGGCCTTTCATTGGCAACA 470
Query 268 TGTGGTCCTTTCTTAGAGCTTTCAAAACATCTGATCCTGAATCCTTCATCCAATC-C-TA 325
||| ||| ||||| ||| | ||||| || ||||| ||||| ||||||| || | | | |
Sbjct 471 TGTTGTCGTTTCTCAGATCGTTCAAGACTTCTGACCCTGATTCCTTCA-CC-AGCACTTT 528
Query 326 CATCACCAGGTATGGGCGTACCGGGATTTATAAAGCACACATGTTTGGGTACCCATGTGT 385
||||| |||||||| | || || || ||||||||||||||||| ||| ||||| || |
Sbjct 529 CATCAAAAGGTATGGACCTAAAGGTATCTATAAAGCACACATGTTCGGGAACCCAAGTAT 588
Query 386 ACTAGTAACAACACCAGAGACTTGTAGGCGAGTTCTAACAGATGATGATGCCTTCCA-CA 444
| |||||||||||||||| ||||| |||| || || |||||||||||||| ||| | |
Sbjct 589 AATAGTAACAACACCAGACACTTGCCGGCGTGTGCTGACAGATGATGATGCATTCAAGC- 647
Query 445 TAGGTTGGCCAAAATCTACCATGAAACTCATTGGCAGGAAGTCCTTTGTTGGTATCTCCT 504
||||||||||| |||||| ||| |||||||||| |||||||| || |||||||||| |
Sbjct 648 CAGGTTGGCCAACATCTACAATGGAACTCATTGGAAGGAAGTCATTCATTGGTATCTCAT 707
Query 505 TTGAAGAACACAAGAGGCTCAGGCGTTTGACTTCTGCTCCTGTCAATGGCCCTGAAGCTC 564
| || ||||||||| |||||||||| |||||| ||||||| |||||||||| |||||| |
Sbjct 708 TCGAGGAACACAAGCGGCTCAGGCGCTTGACTGCTGCTCCAGTCAATGGCCATGAAGCCC 767
Query 565 TCTCT-GTATACATACAGTTCATTGAAG-AAACTGTTAATACTGATCTAGAAAAATGGTC 622
||||| | ||||||| || |||||||| |||| |||| ||| | ||| || || ||| |
Sbjct 768 TCTCTACT-TACATACCGTACATTGAAGAAAAC-GTTATTACCGTTCTTGACAAGTGGAC 825
Query 623 CAAAATGGGAGAAATCGAGTTCTT-ATCTCATTTGCGTAAGCTTACGTTTAAGG-TCATT 680
||||||||||| |||||||||| | ||||| ||||||||||||| ||| ||| ||||
Sbjct 826 TAAAATGGGAGAGTTCGAGTTCTTGA-CTCATCTGCGTAAGCTTACCTTT-AGGATCATC 883
Query 681 ATGTACATATTTCTCAGCAGTGAGAGTGAGCATGTCATGGATTCATTGGAACGGGAGTAT 740
|||||||| ||||||||| |||||||||| |||| |||||| |||||||||| || |||
Sbjct 884 ATGTACATCTTTCTCAGCTCTGAGAGTGAGAATGTAATGGATGCATTGGAACGAGAATAT 943
Query 741 ACCAAC-CTTAACTATGGAGTTCGAGCAATGGGTA-TTAATCTTCCTGGGTTTGCTTATC 798
| || | ||||||||||||||||||||||| || | | ||| ||||||| ||||||||||
Sbjct 944 A-CAGCTCTTAACTATGGAGTTCGAGCAAT-GGCAGTCAATATTCCTGGATTTGCTTATC 1001
Query 799 ATAGAGCTTTGAAGGCAAGGAAAAAACTTGTAGCTGCCTTTCAGTCCATAGTGACTAACC 858
||||||| | ||||| ||||||| ||||||||||||||||||||||||||||||| | |
Sbjct 1002 ATAGAGCACTCAAGGCGAGGAAAACACTTGTAGCTGCCTTTCAGTCCATAGTGACTGAGC 1061
Query 859 GAAGAAATCAAAGGAAGCAGAATATTTCATCCAA-TA-GAAAAGATATGCTGGATAATCT 916
| |||||||||||| ||||||| |||| | |||| || |||| |||||| | || |||||
Sbjct 1062 GCAGAAATCAAAGGGAGCAGAACATTTTA-CCAAATAAGAAA-GATATGTTAGACAATCT 1119
Query 917 AAT-AGATGTTAAAGATGAAAACGGAAGAGTC-TTAGATGATGAGGAAATTATTGACCTT 974
| | |||||||||||||| | |||||| | || ||||| || |||||||| || ||
Sbjct 1120 TCTTA-ATGTTAAAGATGAAGAGGGAAGAA-CATTGGATGACGAAGAAATTATCGATGTT 1177
Query 975 -TTGTTGATGTATCTTAATGCGGGTCATGAATCTTCTGGACAC-CTCACTATGTGGGCTA 1032
|| | ||||||||||||||| ||||||||||| ||||| ||| | || |||||||||||
Sbjct 1178 CTTCT-GATGTATCTTAATGCCGGTCATGAATCCTCTGGCCACAC-CATTATGTGGGCTA 1235
Query 1033 CCATTTTGATGCAAGAACACCCT-ATGATTCTGCAAAAGGCTAAGG-AA--GAACAAGAG 1088
||||||| | |||||||||||| | | |||| |||| ||| |||| || ||||||||
Sbjct 1236 CCATTTTTCTACAAGAACACCCTGA-GTTTCTTCAAAGGGCAAAGGTAAATGAACAAGAA 1294
Query 1089 AGGATCGTAAAAAAGAGAGCACCG--GGACAGAA-G-T-TGACGCTTAAAGAGACACGTG 1143
| |||| | ||||| || || | | || || || | | | || || ||||| || || |
Sbjct 1295 ATGATCCTTAAAAATAG-GC-CTGAAGGTCAAAAAGGTCTAACTCTAAAAGAAACCCG-G 1351
Query 1144 -AAATGGTGTATCTT-TCTCAGGTTATTGATGAGACCCTTCGAGTAATTACATTCTCTCT 1201
|||||| || |||| || |||||| | |||||||| |||||||| || |||||||| ||
Sbjct 1352 CAAATGGAGT-TCTTATCGCAGGTTGTAGATGAGACACTTCGAGTGATAACATTCTCACT 1410
Query 1202 GACGGCCTT-CAGGGAAGCAAAGAGTGATGTCCAAATGGATGGCTATATAATTCCAAAAG 1260
|| || || | |||| ||||||| ||| ||| ||||| |||||||| | || |||||||
Sbjct 1411 CACTGCTTTTC-GGGAGGCAAAGACTGACGTCGAAATGAATGGCTATTTGATCCCAAAAG 1469
Query 1261 GCTGGAAGGTTCTGACTTGGTTTAGGAACGTCCAT-TTGGACCCTGAAATCTACCCGGAT 1319
| ||||||||| |||| ||||||||| | ||||| ||| |||||||| |||| ||||||
Sbjct 1470 GTTGGAAGGTTTTGACATGGTTTAGGGATGTCCACATTG-ACCCTGAAGTCTATCCGGAT 1528
Query 1320 CCAAAGAAA-TTTGATCCTTCAAGATGGGAG---GGATACACACCAAAAGCAGGCACATT 1375
|||| |||| ||||||||||| |||||||| || | | ||||||||| || | ||
Sbjct 1529 CCAA-GAAAATTTGATCCTTCTAGATGGGATAATGGTTTCGTACCAAAAGCTGGTGCGTT 1587
Query 1376 CCTTCCTTTTGGTT-TGGGAAGCCACCTATGCCCGGGAAACGATCTTGCCAAGCTCGAGA 1434
||||||||||||| ||| |||||| |||||||| ||||| ||||| || ||||||||||
Sbjct 1588 CCTTCCTTTTGGTGCTGG-AAGCCATCTATGCCCAGGAAATGATCTCGCGAAGCTCGAGA 1646
Query 1435 TTTCCATTTTTCTTCATCATTTCCTCCTCAAATACCGGGTGGAAA-GGAGCAATCCCG-G 1492
| || ||||||||||||||||||||||| ||||| | |||| ||| ||||||| ||| |
Sbjct 1647 TATCAATTTTTCTTCATCATTTCCTCCTGAAATATCAGGTG-AAACGGAGCAACCCCAAG 1705
Query 1493 ATGTCCGGTGATGT-TCTTGCCTCACAATC-GACCCAAA-GATAATTGCCTAGCAAGAAT 1549
||||| ||||||| | |||||||||| | |||| || ||||||||| | ||||||||
Sbjct 1706 -TGTCCAGTGATGTAT-TTGCCTCACAC-CAGACC-AACTGATAATTGCTTGGCAAGAAT 1761
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67076921445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5