BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32460.1
Length=1792
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482173 jgi|Araly1|482173|fgenesh2_kg.4__1233__AT2G32460.2 2484 0.0
Ahg497036 jgi|Araly1|497036|fgenesh2_kg.9__1__AT4G13480.1 82.4 1e-14
> Ahg482173 jgi|Araly1|482173|fgenesh2_kg.4__1233__AT2G32460.2
Length=1723
Score = 2484 bits (1345), Expect = 0.0
Identities = 1647/1780 (93%), Gaps = 71/1780 (4%)
Strand=Plus/Plus
Query 1 atatatacaaaaatatatacaatatacaaacatcgtatatatCAAGTAACAGAGAGAAAA 60
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATATATACAAATATATATAC-ATATACAAACATCGTATATATCAAGTAACAGAGAGAAAA 59
Query 61 ATCTTTTTTCTTCCTCTCCTTGATCGGAGGGTCGCCGTGTTGAAAAGGATGGATGGTGGT 120
||| |||||||||||||||||||||||||||||||||||||| ||| | ||| |
Sbjct 60 ATC-TTTTTCTTCCTCTCCTTGATCGGAGGGTCGCCGTGTTG-AAA--A-GGA------T 108
Query 121 GGAGAGACGACGGCGACGGCTACGATGGAGGGGAGAGGGTTGAAGAAAGGGCCGTGGACA 180
| || || | |||||||||||||||||||||||||||||||||||||
Sbjct 109 ------------G-GATGG-T--GATGGAGGGGAGAGGGTTGAAGAAAGGGCCGTGGACA 152
Query 181 ACGACGGAGGATGCGATCTTGACGGAGTACGTGAGAAAACACGGTGAAGGTAATTGGAAC 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 153 ACGACGGAGGATGCGATCTTGACGGAGTACGTGAGGAAACACGGTGAAGGTAATTGGAAC 212
Query 241 GCCGTGCAAAAGAACTCAGGTTTGCTCCGGTGTGGCAAAAGTTGCC-GTCTACGGTGGGC 299
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 213 GCCGTGCAAAAGAACTCAGGTTTGCTCCGGTGTGGCAAAAGTTGCCGGT-TACGGTGGGC 271
Query 300 GAATCATCTCCGGCCAAATCTAAAGAAAGGATCTTTTACTCCTGATGAAGAAAAGATCAT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 GAATCATCTCCGGCCAAATCTAAAGAAAGGATCTTTTACTCCTGATGAAGAAAAGATCAT 331
Query 360 CATCGACCTTCACGCTAAGCTTGGAAACAAATGGGCTCGTATGGCTTCTCAGTTACCTGG 419
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 332 CATCGAGCTTCACGCTAAGCTCGGAAACAAATGGGCTCGTATGGCTTCTCAGTTACCGGG 391
Query 420 AAGAACAGACAATGAGATCAAGAACTATTGGAACACGAGGATGAAGAGAAGACAAAGAGC 479
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 AAGAACAGACAACGAGATCAAGAACTATTGGAACACGAGGATGAAGAGAAGACAAAGAGC 451
Query 480 TGGTTTGCCTTTATACCCTCATGAGATTCAACATCAAGGGATTGATATTGATGATGAGTT 539
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 452 TGGTTTGCCTTTATACCCTCATGAGATTCAACATCAAGGAATTGATAATGATGATGAGTT 511
Query 540 TGAGTTTGATTTAACTTCCTTTCAGTTCCAAAACCAAGATCTTGATCATAACCACCAAAA 599
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 512 TGAGTTTGATTTAACTTCCTTCCAGTTCCAAAACCAAGATCTTGATCATAACCACCAAAA 571
Query 600 TATGATTCAGTACACTAATTCTTCTAATACTTCATCATCCTCGTCTTCATTCTCTTCTTC 659
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 572 TATGATTCAATACACTAATTCTTCTAATACTTCATCATCTTCGTCTTCATTCTCTTCTTC 631
Query 660 ATCTTCTCAACCATCAAAAAGGCTGCGTCC---TGATCCTTTAGTCTCTACTAATCCCGG 716
|||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 632 ATCTTCTCAACCTTCAAAAAGGCTGCGTCCTGATGATCCTTTAGTCACTACTAATCCCGG 691
Query 717 CCTAAACCCGATCCCCGATTCTTCGATGGATTTTCAAATGTTCTCTCTTTACAACAATAG 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 CCTAAACCCGATCCCCGATTCTTCGATGGATTTTCAAATGTTCTCTCTTTACAACAATAG 751
Query 777 CCTTGAGAATGACAATAACCAGTTTGGTTTCTCTGTTCCTTTGTCCTCATCATCCTCGTC 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 CCTTGAGAATGACAATAACCAGTTTGGTTTCTCTGTTCCTTTGTCCTCATCATCCTCGTC 811
Query 837 TAACGAGGTGTGTAATCCCAACCACATCCTTGAGTACATCTCCGAGAATTCGGACACAAG 896
||| | ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 812 CAAC-------G--ATCCCAACCACATCCTTGAGTTCATCTCCGAGAATTCGGACACAA- 861
Query 897 A-AATACCAATAAGAAAGACATTGATGCTATGAGTTATAGTTCATTGCTTATGGGAGATC 955
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 862 ACAATACAAATAAGAAAGACATTGATGCTATGAGTTATAGTTCATTGCTTATGGGAGATC 921
Query 956 TTGAGATAAGATCGAGTTCTTTCCCTTTAGGACTAGACAATAGCGTCCTAGAGCTTCCTT 1015
||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 922 TTGAGATAAGACCGAGTTCTTTCCCTTTAGGACTAGAAAATTCCGTCCTAGAGCTTCCTT 981
Query 1016 CAAACCAAAGACCGACCCATTCGTTCAGTTCTAGTCCTATTATTGACAATGGTGTCCATC 1075
||||||||| ||||||||||||||||||||||| ||||||| | ||||||||||||||||
Sbjct 982 CAAACCAAACACCGACCCATTCGTTCAGTTCTAATCCTATTCTCGACAATGGTGTCCATC 1041
Query 1076 TTGAGCCACCTTCTGGCAATAGTGGACTACTTGATGCCCTCTTGGAGGAGTCTCAAGCCT 1135
|||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1042 TTGAGCCACCAGCTGGCAACAGTGGACTACTTGATGCTCTCTTGGAGGAGTCTCAAGCCT 1101
Query 1136 TGTCTCGAGGCGGACTCTTCAAGGACGTTAGGGTTTCCTCCAGTGACCTATGTGAGGTTC 1195
|||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1102 TGTCTCGAGGCGGAGTCTTCAAGGACGTTAGGGTTTCCTCGAGTGATCTATGTGAGGTTC 1161
Query 1196 AAGATAAAAGGGTGAAGATGGACTTTGAGAATCTTTTAATAGATCATCTAAACTCTTCTA 1255
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1162 AAGATAAGAGGGTGAAGATGGACTTTGAGAATCGGTTAATAGATCATCTAAACTCTTCTC 1221
Query 1256 ATCATTCATCATTGGGAGCAAACCCTAATATTCACAACAAGTACAATGAGCCAAC---AA 1312
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1222 ATCATTCATCATTGGGAACAAACCCTAATATTCACAACAAGTACAATGAGCCAACATTAA 1281
Query 1313 TGGT-AAAAGTAACGGTGGATGATGATGATGAATTATTGACGAGCCTTCTCAACAACTTC 1371
|||| |||| ||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1282 TGGTGAAAA-CAACGGTGGATGATGATGATGACTTATTGATGAGCCTTCTCAACAACTTC 1340
Query 1372 CCTTCAACCACAACACCTTTGCCTGATTGGTATCGGGTGACAGAAATGCAAAACGAGGCC 1431
|||||| |||||||||| |||||||||||||| |||||||| ||||| |||||||| |||
Sbjct 1341 CCTTCAGCCACAACACCGTTGCCTGATTGGTACCGGGTGACGGAAATCCAAAACGAAGCC 1400
Query 1432 TCATATCTTGCCCCACCAAGTGG---AATTCTTATGGGAAACCATCAAGGTAACGGCAGG 1488
||||||||||| ||||| || || |||||| ||||||||||||||||||||||| |||
Sbjct 1401 TCATATCTTGCTCCACCGAGCGGATCAATTCTAATGGGAAACCATCAAGGTAACGGGAGG 1460
Query 1489 GTGGAACCACCCACGGTGCCGCCTTCGTCCAGTGTAGATCCTATGGCCTCGTTGGGGTCA 1548
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1461 GTGGAACCACCCACGGTGCCACCTTCGTCCAGTGTAGATCCTATGGCCTCGTTGGGGTCA 1520
Query 1549 TGCTATTGGAGCAACATGCCTAGCATCTGTTAGTTTGGAACCTGCC-CATGAGCAAAAAT 1607
||||||||||||||||||||||||||||||||||||||||||| || |||||| |||| |
Sbjct 1521 TGCTATTGGAGCAACATGCCTAGCATCTGTTAGTTTGGAACCT-CCTCATGAGTAAAA-T 1578
Query 1608 CATATTTCTTTGATTTGaaaaaaaGAGAAAGCTAATTGTGAGCTTAACTTGTGTTTAATG 1667
||| || |||||||||| |||| |||||||||||||||||||| || |||| ||| ||
Sbjct 1579 CAT-TT-CTTTGATTTGGAAAA--GAGAAAGCTAATTGTGAGCTCAATTTGTCTTTGTTG 1634
Query 1668 TGTAAAATCTTCTTCAAAGTGTTTTCAACTTGGGATGTGCTATGAACTGT-ATGTTAACA 1726
||||||||||||||||| | ||||| ||||||||||||| | |||||||||
Sbjct 1635 TGTAAAATCTTCTTCAA--------C---TTGGGCTGTGCTATGAACTTTTATGTTAACA 1683
Query 1727 TGTTTTCAAGGAACAAAAGAGAAATTGAAAGAGATGAGGA 1766
|||||||||||||||||||||||||| |||||||||||||
Sbjct 1684 TGTTTTCAAGGAACAAAAGAGAAATTAAAAGAGATGAGGA 1723
> Ahg497036 jgi|Araly1|497036|fgenesh2_kg.9__1__AT4G13480.1
Length=802
Score = 82.4 bits (44), Expect = 1e-14
Identities = 140/185 (76%), Gaps = 12/185 (6%)
Strand=Plus/Plus
Query 273 TGGCAAAAGTTGCCGTCTACGGTGGGCGAATCATCTCCGGCCAAATCTAAAGAAAGGATC 332
||||||||| ||| | ||| | |||| ||| | || | ||| |||| |||| |||| |
Sbjct 129 TGGCAAAAGCTGCAGACTAAGATGGGTTAATTACCTTAGACCAGATCTCAAGAGAGGA-C 187
Query 333 -TTTTACTCCTGATGAAGAAAAGATCATCA-TCGACCTTCACGCTAAGCT-TGGAAACAA 389
| |||||| |||||||||| || || | | || || ||||||||| | ||||| |
Sbjct 188 AGATCACTCCTCATGAAGAAAATATAAT-ACTTGAGCTACACGCTAAG-TGGGGAAATAG 245
Query 390 ATGGGC-TCGTATGGCTTC-TCAG-TTACCTGGAAGAACAGACAATGAGATCAAGAACTA 446
||| | || || || | | || ||||| |||||||||||||||||||||||||||||
Sbjct 246 GTGGTCTTC-AATTGC-ACGT-AGTTTACCAGGAAGAACAGACAATGAGATCAAGAACTA 302
Query 447 TTGGA 451
|||||
Sbjct 303 TTGGA 307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67267372670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5