BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32470.1
Length=1723
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482175 jgi|Araly1|482175|fgenesh2_kg.4__1235__AT2G32480.1 617 6e-176
Ahg941786 jgi|Araly1|941786|scaffold_602330.1 545 3e-154
Ahg941784 jgi|Araly1|941784|scaffold_602328.1 196 4e-49
Ahg941785 jgi|Araly1|941785|scaffold_602329.1 163 4e-39
Ahg489131 jgi|Araly1|489131|fgenesh2_kg.6__2265__AT5G22792.1 163 4e-39
> Ahg482175 jgi|Araly1|482175|fgenesh2_kg.4__1235__AT2G32480.1
Length=1541
Score = 617 bits (334), Expect = 6e-176
Identities = 363/376 (97%), Gaps = 6/376 (2%)
Strand=Plus/Minus
Query 1350 ACAAACACATCTTTTATAAGGGATAACAAGAGTAGAACTATTACATGAATATGTATGTAC 1409
||||||||||||||||||| ||||||||||||||||||||||||||| | | |||||||
Sbjct 1541 ACAAACACATCTTTTATAATGGATAACAAGAGTAGAACTATTACATG-A-A--TATGTAC 1486
Query 1410 CATAAATTCATCACCA--TCTTTGTGTTGGATAGCCAAATTTGTTCTAAACTCTCAACCT 1467
|||||||||||||||| | ||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1485 CATAAATTCATCACCATGTGTTTGTGTTGGATAACCAAATTTGATCTAAACTCTCAACCT 1426
Query 1468 CTTCACACTAAAGTTTCTCTCTTCCTCCTCAAAGAGATAACTACAACATTTCTTTGATGA 1527
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1425 CTTCACACTAAAGTTTCTCTCTTCCTCCTCAAAGAGATAACTACAACATTTCTTTGATAA 1366
Query 1528 AATCAAGGCTAAGTGTGTCCTTAACGATGAGAAACAATCCAAGGAATATCACAAGCATGA 1587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 AATCAAGGCTAAGTGTGTCCTTAACGATGAGAAACAATCCAAGGAATATCACAAGCATGA 1306
Query 1588 TCCCTGAAGACATTATCCCTTGTTCTACCTCTACAGGAAGCTTCTTCCCTCCTCTAACAG 1647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 TCCCTGAAGACATTATCCCTTGTTCTACCTCTACAGGAAGCTTCTTCCCTCCTCTAACAG 1246
Query 1648 CTTCCAACAATATCAATGCCAATGTTCCACCGTCAAGAGCCGGTAACGGCAAGAGATTGA 1707
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1245 CTTCCAACAATATCAATGCCAAAGTTCCACCGTCAAGAGCCGGTAATGGCAAGAGATTGA 1186
Query 1708 TCACCGCAAGGTTGAT 1723
||||||||||||||||
Sbjct 1185 TCACCGCAAGGTTGAT 1170
> Ahg941786 jgi|Araly1|941786|scaffold_602330.1
Length=1223
Score = 545 bits (295), Expect = 3e-154
Identities = 924/1213 (76%), Gaps = 101/1213 (8%)
Strand=Plus/Plus
Query 117 TCA-AAATCTTCTCCCCCACGTAACCTAGATCACTCCGGAAACTCCACA-AAAACCA-TC 173
||| ||| |||||||| || ||||||||||| || |||||||||||||| ||| || ||
Sbjct 31 TCACAAA-CTTCTCCCTCAAGTAACCTAGATGACGCCGGAAACTCCACACCAAA-CATTC 88
Query 174 TCTTTTGATCTCACCTTCGAGATACTATCGATCCTTCCGACCAAATCCAT-ATCCGATTC 232
|| ||||||||||||| |||||||| || | |||||| | |||||| | ||||| |||
Sbjct 89 -CTCTTGATCTCACCTTAGAGATACTCTCTAGACTTCCGGCGAAATCCCTCATCCGGTTC 147
Query 233 CAATCCGTATCAAAGCTCTGGTTCTCAATCATCCGCAGTAAAGAATTCGTTGACTCGTTC 292
||| |||| || ||| |||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 148 CAAGCCGTGTCTAAGTTCTGGTTCTCAATCATCCGCAGTAAAGATTTCGTCGACTCGTTC 207
Query 293 CTGACTAGGTCAAAGACACGGCCGCGTCTCCTTTTCACTTTCAA-ACACTTGGATTCC-G 350
||||||||||||||||| || || ||| ||||||| || ||||| | |||| |||||| |
Sbjct 208 CTGACTAGGTCAAAGACTCGACCTCGTTTCCTTTTAACCTTCAAGA-ACTTCGATTCCCG 266
Query 351 -ACAAGCTTTTCATCTACTCAGCTCCTGATCACGACAACG--GA-AAATCCTCTC-CGGG 405
| || | |||||||| |||||||||||| ||| | || || |||||||| | | |
Sbjct 267 GA-AA-CGTTTCATCTTCTCAGCTCCTGAACACCAAAAAAATGACAAATCCTC-CACAGT 323
Query 406 CATAGCCAGACACGACATGACGATCTCGAATT-TCG--TCAACTACATCAGATCTCC-CC 461
| |||||||||||||||||||||||| ||| || || ||||||||| || ||
Sbjct 324 TTTCGCCAGACACGACATGACGATCTCGGCCGATCGGGTCTACCACATCAGATGTCGTCC 383
Query 462 CTGTCAACGGATTCGTTTGTTGCACACGTGGTTCAT-CGATCGCGGTTTGTAATCCAACC 520
| || ||||| ||||| || ||||| |||||| || |||||||||||||||||||||||
Sbjct 384 C-GTGAACGGTTTCGTCTGCTGCACGCGTGGTG-ATTCGATCGCGGTTTGTAATCCAACC 441
Query 521 ACGAGACAAATAGTAAAACTGCCCGATGTTGT-TACCAACGAAA-ATTACATGCACGTAC 578
|| ||||||||||| ||| |||| ||||||| | |||||| || | || || ||| ||
Sbjct 442 ACTAGACAAATAGTGAAATTGCCAGATGTTGAAT-CCAACGGAAGAC-ACGTGTACGCAC 499
Query 579 GTCTCGGATACGATCCAGTGGAAGATCAATACAAAGTGTTGT-TGGT--TGTGAT--GAT 633
||||||||||||||||||| |||||||||||||||||||||| || | ||| | |||
Sbjct 500 GTCTCGGATACGATCCAGTCGAAGATCAATACAAAGTGTTGTGTG-TAATGTTTTTCGAT 558
Query 634 G-TT-CGACG-GCTA--T--A-GA-ACA-GATACAGATCAGGAATATTTCGTTTTCAC-- 681
|| | | | |||| | | | ||| | ||| | | ||| || |||||||||
Sbjct 559 CCTTAC-A-GTGCTAAGTGTAAGCGACAAGGTACCCAACCGGAGCCTTACGTTTTCACAT 616
Query 682 -GCTAAGTTCTCAACAAAAAGAGTGGAGAAAGATTGAAAACAC-CACTGGAGAAACTTAT 739
|| || | |||| ||||||||||||||||||||||||| ||| || || | |||||
Sbjct 617 TGC-AA-T-CTCAGCAAAAAGAGTGGAGAAAGATTGAAATCACGCAA-GGTGTTGCTTAT 672
Query 740 CACAT-GGTCTATGGAGGGATATGCATAGATGGTGCTATATACTATGGGGTTTCACAG-T 797
| | | |||| |||||||||||||||| |||||||||||||||| ||| | | || | |
Sbjct 673 CGC-TCGGTCGATGGAGGGATATGCATCGATGGTGCTATATACTTTGGAGATGGAC-GCT 730
Query 798 CAATAATAGTTAAATTCGATGTTAGGTCTGAGAAGATGGAATTCATTCAAGCACACGAAG 857
||| |||||||| |||||||||||| ||||||| | |||| | |||||||||| ||||
Sbjct 731 CAAGAATAGTTAGATTCGATGTTAGATCTGAGACGTTGGAGCTAATTCAAGCACCCGAAA 790
Query 858 TAT-CACATA-TCGCGCCACCATACTATTCCACTCTTTTATATTTGTCTAGCGATA-T-G 913
|| ||| || || || | | | | |||| |||||||| ||| | | || | | |
Sbjct 791 -ATTCAC-TAATCACGGAAACGTCCGATTCTGCTCTTTTAAATTACAAT-G-GAAAATTG 846
Query 914 ATCCGTATGGAGAATCATTCCAAT-GAAGAGGTAAGATTTTGGATTCTAGAGGATGCTGA 972
| || | || || ||| || | || ||| || ||| ||||||||||||||||||||
Sbjct 847 GGCGGTGTTGATTATAATTACACTAGA-GAGACAATATTGTGGATTCTAGAGGATGCTGA 905
Query 973 GAAACTCAGAGTT-TCGCATATGGCG-TGTG----A--TG-TG--TGGGATGATTCACTT 1021
||||| ||| | ||| | || | | | || | | || |||||||||| ||||
Sbjct 906 GAAACA-AGAATGGTCGGA-ATTGAGGTTTGCCCGACCTTCTGAGTGGGATGATTTACTT 963
Query 1022 G-GGAAGTACGTAAGGGCCAAGGAAGAGATTCATACCGGCAAGCTTATGG-GGATTTATC 1079
| ||| ||| | | | ||| ||||| ||||||||| ||||||| || || ||
Sbjct 964 GAGGAT-TACTTTACCTCTGAGGGAGAGAGTCATACCGGTGAGCTTATTATGG-TTGATT 1021
Query 1080 CACGGTTACAATCGTCAAAATATAAACCGTTTAGTGTTTGCGT-TTACCATTTTAACAAA 1138
|||||||| | | ||| | | | ||||||||||||||| | |||| ||||| | | |
Sbjct 1022 CACGGTTA-A-TA-TCA---TCTGAGCCGTTTAGTGTTTGC-TATTACGATTTTCATAGA 1074
Query 1139 GTGGGGTTaaaaaaaaCAGAGATCCAAGGAAGTAACG-ACGATGATATT-AGATTTCGTT 1196
| | | |||| || | ||| ||||||||| | || | ||||| ||| ||| | |||
Sbjct 1075 GAGAGCTTAAGAAGAGTGGAGGTCCAAGGAATTG-CGGATGATGA-ATTTAGACGT-GTT 1131
Query 1197 G-TGGGATTGGTATGCGAACTCATGAGATATTGA-TTTTGGAGGTTACATTGAGAATATT 1254
||||||||||| |||||||| |||||| ||| |||| |||||| |||||||||||
Sbjct 1132 TATGGGATTGGTAAGCGAACTCGTGAGATTTTGGGTTTTCCAGGTTATGTTGAGAATATT 1191
Query 1255 AGGTTCTTGTGAG 1267
|||||||||||||
Sbjct 1192 AGGTTCTTGTGAG 1204
> Ahg941784 jgi|Araly1|941784|scaffold_602328.1
Length=828
Score = 196 bits (106), Expect = 4e-49
Identities = 466/629 (74%), Gaps = 67/629 (11%)
Strand=Plus/Plus
Query 669 ATTTCGTTTTCACGCTAAGTTCTCAACAAAAAGAGTGGAGAAAGATTGAAAACACCACTG 728
||| |||||||||| |||| ||||||||||||||||||||||||||||||| |||| |
Sbjct 215 ATTACGTTTTCACGTTAAGCTCTCAACAAAAAGAGTGGAGAAAGATTGAAATCACC-CAA 273
Query 729 GAGAA-ACTTATCA-CATGGT-CTATGGAGGGATATGCATAGATGGTGCTATATACTATG 785
|| | |||||| | || ||| | ||| ||| |||||||| |||||||||||||||||||
Sbjct 274 GATATTACTTAT-ATCACGGTAC-ATGAAGGAATATGCATGGATGGTGCTATATACTATG 331
Query 786 GGGTTTCACAG-TCAATAATAGTTAAATTCGATGTTAGGTCTGAGAAGATGGAATTCATT 844
| | | || | ||| ||||| || |||||||||||| ||||||||| |||| | |||
Sbjct 332 GAGATGGAC-GCTCAGGAATAGATATATTCGATGTTAGATCTGAGAAGCTGGAGCTAATT 390
Query 845 CAAGCAC-ACGAAGTATCACATATCGCGCCACCATACTATTCCACTCTTTTATATTTGTC 903
||| || | |||| ||| |||| |||| || | | |||| ||||| || |||
Sbjct 391 CAAATACCA-GAAGGGTCAGATATAGCGC-AC--T--T-TTCCGCTCTTATAAATTACAA 443
Query 904 TAGCGATAT-GATCCGTATGGAGAATCATTCCAATGAAGAGGTAAGATTTTGGATTCTAG 962
| || | || | | || | ||||| || | || ||| ||| ||||||||||
Sbjct 444 TGGCAA-ATTGGGCGGTGT--AGAAT-ATG--ATTGCC----TAATATTGTGGATTCTAG 493
Query 963 AGGATGCTGAGAAAC-TCAGAGTTTCGCATATGGCGTGTGA--T-G-TGT-G-G-G-A-T 1012
|||||||| |||||| | || | | || | ||||||||| | | | | | | | | |
Sbjct 494 AGGATGCTAAGAAACATAAGTGGT-CGGAGATGGCGTGTCCCCTAGCTTTTGAGTGGAGT 552
Query 1013 GATTCACTTGGGAAGT-ACGTAAGGGCCAA-GGAAGAGATTCATACCGGCAAGCTTATGG 1070
|||| ||||||| | | || ||| | |||| || |||||||||||||| |||||||||
Sbjct 553 GATTTACTTGGGGA-TCACATAACGTCCAATGGG-GAGATTCATACCGGTGAGCTTATGG 610
Query 1071 -GGATTTATCCACGGTTACAATCGTCAAAATATAAACCGTTTAGTGTTTGCGT-TTACCA 1128
|| || ||||| ||||| | |||| | ||| ||||||||||||||| | |||| |
Sbjct 611 TGG-TTAATCCAGGGTTA-AG--GTCA---TCTAAGCCGTTTAGTGTTTGC-TATTACGA 662
Query 1129 TTTTAACAAAGTGGGGTTaa-aa-aa-aaCAGAG-A--TCCAAGGAAGTAAC-GACGATG 1181
|||||| | || | | ||| || || || || | | | |||||| | | || ||||
Sbjct 663 TTTTAATAGAGAGAGAATAAGAATAAGAAAAGTGGAGGTTGAAGGAATTG-CTGATGATG 721
Query 1182 ATATT-AGAT-TTCGTTG-TGGGATTGGTATGCGAACTCATGAGATATTGA-TTTTGGAG 1237
| ||| ||| || || ||||||||||| |||||||| |||||| ||| |||| ||
Sbjct 722 A-ATTTAGACGTT--TTCATGGGATTGGTAAGCGAACTCGTGAGATGTTGTGTTTTCCAG 778
Query 1238 GTTACATTGAGAATATTAGGTTCTTGTGA 1266
||||| |||||||||||| ||||||||||
Sbjct 779 GTTACGTTGAGAATATTAAGTTCTTGTGA 807
> Ahg941785 jgi|Araly1|941785|scaffold_602329.1
Length=209
Score = 163 bits (88), Expect = 4e-39
Identities = 151/181 (83%), Gaps = 6/181 (3%)
Strand=Plus/Plus
Query 117 TCAAAATCTTCTCCCCCACGTAACCTAGATCACTCCGGAAACTCCACAA-AAACCA-TCT 174
||| || |||||||| || ||||||||| |||| ||| ||||||||||| ||| || ||
Sbjct 31 TCACAACCTTCTCCCTCAAGTAACCTAGTTCACGCCGAAAACTCCACAACAAA-CATTC- 88
Query 175 CTTTTGATCTCACCTTCGAGATACTATCGATCCTTCCGACCAAATCCAT-ATCCGATTCC 233
|| ||||||||||| |||||||||| | | |||||| || ||||| ||||||||||
Sbjct 89 CTCTTGATCTCACCATCGAGATACTCGCTAGACTTCCGGGGAATTCCATCATCCGATTCC 148
Query 234 -AATCCGTATCAAAGCTCTGGTTCTCAATCATCCGCAGTAAAGAATTCGTTGACTCGTTC 292
||| ||| ||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 149 AAATACGTGTCAAAGCTCTGGTTCTCAATCATCCGCAGTAAAGATTTCACAGACTCGTTC 208
Query 293 C 293
|
Sbjct 209 C 209
> Ahg489131 jgi|Araly1|489131|fgenesh2_kg.6__2265__AT5G22792.1
Length=609
Score = 163 bits (88), Expect = 4e-39
Identities = 232/297 (78%), Gaps = 28/297 (9%)
Strand=Plus/Plus
Query 578 CGTCTCGGATACGATCCAGTGGAAGATCAATACAAAGTGTTGTTGGTTGTGATGATGTTC 637
||||| |||||||||||||| ||||||||||||||||||||| | | |||||||||||||
Sbjct 13 CGTCTAGGATACGATCCAGTCGAAGATCAATACAAAGTGTTG-T-G-TGTGATGATGTTC 69
Query 638 GACGGCTA---------T-AG-A-ACAGATACAGATCAGGAATATTTCGTTTTCACGCTA 685
|| ||||| | | | | ||| | ||| ||||| |||||||| |||| ||
Sbjct 70 GATGGCTACGGCCGCGGTGGGAATAAAGACATAGAACAGGAGCATTTCGTTATCACACTG 129
Query 686 AGTTCTCAACAAAAAGAGTGGAGAAAGATTGAAAACACCACTGGAGAAACTTATCACA-- 743
|| |||||||||||||||||||||||||||||| |||| ||||| |||| ||||
Sbjct 130 AGATCTCAACAAAAAGAGTGGAGAAAGATTGAAGTCACC---GGAGATTCTTA-CACAGA 185
Query 744 TGGTCTATGGAGGGATATGCATAGATGGTGCTATATACTATGG-GGT-TTC-ACAGTCAA 800
|| || | ||||| |||||||| |||||||||||||||||||| ||| || ||| ||
Sbjct 186 TG-TCCAAGGAGGAATATGCATCGATGGTGCTATATACTATGGAGGTGTTGGACACAAAA 244
Query 801 TAATAGTTAAATTCGATGTTAGGTCTGAGAA-GATGGAATTCATTCAAGCACACGAA 856
| ||| || ||| |||||||| || ||||| | |||| || ||| || |||| |||
Sbjct 245 TGTTAGCTAGATTTGATGTTAGATCCGAGAAAG-TGGAGTTTATTAAAACACA-GAA 299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64639145765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5