BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32480.1
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482175 jgi|Araly1|482175|fgenesh2_kg.4__1235__AT2G32480.1 2431 0.0
> Ahg482175 jgi|Araly1|482175|fgenesh2_kg.4__1235__AT2G32480.1
Length=1541
Score = 2431 bits (1316), Expect = 0.0
Identities = 1480/1557 (95%), Gaps = 20/1557 (1%)
Strand=Plus/Plus
Query 1 AATCGTACCACTTCACCGTAGTACTCCAAAATCTCCACTTCTCACGAAACAATGCTATTA 60
||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||
Sbjct 1 AATCGTACCACTTCACCGTAGTACTCCAAAACCTCCGCTTC-CACGAAACAATGCTATTA 59
Query 61 AACATTTCTTCTTCTCCAATCTCTCATCGAAACCCTCACTTCCTCTCCAATTTCAACAAC 120
|||||||||||||||||||||||||||||||||||||| || | | |||||||||
Sbjct 60 AACATTTCTTCTTCTCCAATCTCTCATCGAAACCCTCA----CT-T-C---TTCAACAAC 110
Query 121 CCCATCTCTTATTTCCCTCGACGATCCAAAACCCATCTCTCAAAATCTCATTTTTTCCCC 180
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 111 CCCATCTCTTATTTCCCTCGGCGATCCAAAACCCATCTCTCAAAATCTCATCTTTTCCCC 170
Query 181 AAGTTCACTCCTTTATCCAACCAAAGTCTCAAAAACAGAGTCTTGTTCGGAAACAAGAGG 240
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 171 AAGTTCACTCCTTTATCGAACCAGAGTCTCAAAAACAGAGTCTTGTTCGGAAACAAGAGG 230
Query 241 TACCCAGATGGAGAAAGGTTTGATTTTAGATCAAGAGCTATCTCCGGGATTGATTTGGGA 300
| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 231 TGCCCAGATGGAGAAAGGTTTGATTTTAGGGCAAGAGCAATCTCCGGGATTGATTTGGGA 290
Query 301 AGCTTTGAATCTGTTCTTGAAGCTATTGCTGTTCTCACAACGATCATCGTCGTCCATGAA 360
|||||||||||||||||||||||||||||||||||||| ||||||||||| || || |||
Sbjct 291 AGCTTTGAATCTGTTCTTGAAGCTATTGCTGTTCTCACTACGATCATCGTTGTTCACGAA 350
Query 361 TCAGGTCATTTCCTTGCGGCTTCTCTCCAAGGGATCCATGTGAGTAAATTCGCAATTGGG 420
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 351 TCAGGTCATTTCCTAGCGGCTTCTCTTCAAGGGATCCATGTGAGTAAATTCGCAATTGGG 410
Query 421 TTTGGTCCGATTCTAGCTAAGTTCGATTACAACAATGTTGAGTATTCGCTTAGGGCTTTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 TTTGGTCCGATTCTAGCTAAGTTCGATTACAACAATGTTGAGTATTCGCTTAGGGCTTTT 470
Query 481 CCTTTAGGTGGGTTTGTTGGTTTCCCTGATAATGATCCAGATAGTGAGATTCCTATTGAC 540
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 471 CCTTTAGGTGGGTTTGTTGGTTTCCCTGATAATGATCCTGACAGTGAGATTCCTATTGAT 530
Query 541 GATGAGAATCTTCTTAAGAACAGACCAACTCTAGATAGATCAATTGTTGTTTCAGCTGGA 600
||||||||||| |||||||||||||||||| |||| ||||| ||||||||||||||||||
Sbjct 531 GATGAGAATCTGCTTAAGAACAGACCAACTTTAGACAGATCGATTGTTGTTTCAGCTGGA 590
Query 601 ATTATCGCCAATGTGATCTTTGCTTATGCTATAATCTTTGTTCAAGTGTTATCTGTTGGT 660
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 591 ATTATCGCCAATGTGATCTTTGCTTACGCTATAATCTTTGTTCAAGTGCTATCTGTTGGT 650
Query 661 TTACCTGTACAAGAAGCGTTTCCTGGTGTTCTTGTTCCTGAAGTTAAGACCTTTTCTGCT 720
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 TTGCCTGTACAAGAAGCGTTTCCTGGTGTTCTTGTTCCTGAAGTTAAGACCTTTTCTGCT 710
Query 721 GCTTCTCGTGATGGGTTGCTTTCTGGTGATGTAATTC-TCGCTGTGGACGGTACTGAGCT 779
|||||||||||||| |||||||| |||||||||| || |||||||||||||| || ||||
Sbjct 711 GCTTCTCGTGATGGATTGCTTTCGGGTGATGTAA-TCATCGCTGTGGACGGTGCTCAGCT 769
Query 780 GTCTAAAACCGGGCCTGACGCTGTTTCGAAGATTGTTGACATTGTTAAAAGAAACCCGAA 839
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 770 GTCTAAAACCGGGCCTGACGCTGTTTCCAAGATTGTTGACATTGTCAAAAGAAACCCGAA 829
Query 840 GAGTAATGTGGTGTTT-AGAATCGAAAGAGGGGGTGAAGATTTCGATATTCGGGTTACAC 898
|||| ||||| ||||| || |||| |||||| | ||||||||||||||||||| ||||
Sbjct 830 GAGTGATGTGTTGTTTAAG-GTCGAGAGAGGGAATAAAGATTTCGATATTCGGGTAACAC 888
Query 899 CGGATAAGAACTTTGATGGGACGGGGAAGATCGGTGTTCAGTTGTCTCCAAATGTTAGAA 958
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 889 CGGATAAGAACTTTGATGGGACGGGGAAGATTGGTGTTCAGTTGTCTCCAAATGTTAGAA 948
Query 959 TCACTAAGGTGAGACCGAGGAACATTCCGGAAACGTTTAGATTTGTGGGAAGGGAGTTTA 1018
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 949 TCACTAAGGTGAGACCGAGGAACATTCCGGAAACGTTTAGATTCGTGGGAAGGGAGTTTA 1008
Query 1019 TGGGGCTATCTTCTAATGTTTTGGACGGTTTAAAACAAACATTCTTTAACTTCTCTCAGA 1078
|||||||||| |||||||||||||| ||| |||||||||| ||||| ||||| ||||| |
Sbjct 1009 TGGGGCTATCGTCTAATGTTTTGGATGGTCTAAAACAAACGTTCTTCAACTTTTCTCAAA 1068
Query 1079 CAGCAAGTAAAGTAGCAGGTCCTGTGGCAATTATTGCAGTGGGAGCAGAAGTGGCAAGAT 1138
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 CTGCAAGTAAAGTAGCAGGTCCTGTGGCAATTATTGCAGTGGGAGCAGAAGTGGCAAGAT 1128
Query 1139 CAAATATCGACGGGCTTTACCAATTCGCAGCGTTGCTGAATATCAACCTTGCGGTGATCA 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 CAAATATCGACGGGCTTTACCAATTCGCAGCGTTGCTGAATATCAACCTTGCGGTGATCA 1188
Query 1199 ATCTCTTGCCGTTACCGGCTCTTGACGGTGGAACATTGGCATTGATATTGTTGGAAGCTG 1258
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1189 ATCTCTTGCCATTACCGGCTCTTGACGGTGGAACTTTGGCATTGATATTGTTGGAAGCTG 1248
Query 1259 TTAGAGGAGGGAAGAAGCTTCCTGTAGAGGTAGAACAAGGGATAATGTCTTCAGGGATCA 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 TTAGAGGAGGGAAGAAGCTTCCTGTAGAGGTAGAACAAGGGATAATGTCTTCAGGGATCA 1308
Query 1319 TGCTTGTGATATTCCTTGGATTGTTTCTCATCGTTAAGGACACACTTAGCCTTGATTTCA 1378
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1309 TGCTTGTGATATTCCTTGGATTGTTTCTCATCGTTAAGGACACACTTAGCCTTGATTTTA 1368
Query 1379 TCAAAGAAATGTTGTAGTTATCTCTTTGAGGAGGAAGAGAGAAACTTTAGTGTGAAGAGG 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1369 TCAAAGAAATGTTGTAGTTATCTCTTTGAGGAGGAAGAGAGAAACTTTAGTGTGAAGAGG 1428
Query 1439 TTGAGAGTTTAGAACAAATTTGGCTATCCAACACAAAGA--TGGTGATGAATTTATGGTA 1496
||||||||||||| ||||||||| ||||||||||||| | |||||||||||||||||||
Sbjct 1429 TTGAGAGTTTAGATCAAATTTGGTTATCCAACACAAACACATGGTGATGAATTTATGGTA 1488
Query 1497 CATACATATTCATGTAATAGTTCTACTCTTGTTATCCCTTATAAAAGATGTGTTTGT 1553
|||| | | ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1489 CATA--T-T-CATGTAATAGTTCTACTCTTGTTATCCATTATAAAAGATGTGTTTGT 1541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58316165095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5