BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32500.1
Length=1883
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320989 jgi|Araly1|320989|fgenesh1_pm.C_scaffold_4001046 1260 0.0
Ahg901459 jgi|Araly1|901459|Al_scaffold_0004_2109 466 3e-130
Ahg901060 jgi|Araly1|901060|Al_scaffold_0004_1710 326 5e-88
> Ahg320989 jgi|Araly1|320989|fgenesh1_pm.C_scaffold_4001046
Length=831
Score = 1260 bits (682), Expect = 0.0
Identities = 784/833 (94%), Gaps = 8/833 (1%)
Strand=Plus/Plus
Query 108 ATGATCCATCAAGCTTTAGCTCTCCCTCGTCCTATTCTCACCAGAGGATTTGTGTCTAAT 167
|||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||
Sbjct 1 ATGATCCATCAAGCTTTAGCTCTCCCTCGTCCAATTCTCACCGGAGGATTTGGGTCTAAT 60
Query 168 GGTGGCGGTATGTTTGTCCATCAATGTCGAACAAA-AACCCCTAGGGTTACATTTTGCGC 226
||||| ||| ||||| | ||||||||||||||||| || |||||| ||| ||||||||||
Sbjct 61 GGTGGAGGTGTGTTTCTGCATCAATGTCGAACAAAGAA-CCCTAGAGTTGCATTTTGCGC 119
Query 227 TGCTGATGATCAGATAGCCAGTTCCAAGTCGAACAAGACAAGGAAAGTAGTGGAGCATGT 286
| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTCTGATGATCAAATTTCCAGTTCCAAGTCGAACAAGACAAGGAAAGTAGTGGAGCATGT 179
Query 287 GTGTTTACTCAAAGCAAAAGAGGGTTTATCTGAGGAAGTAGAAAAAGATATGCTTGACTA 346
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 180 GTGTTTACTCAAAGCAAAAGAGGGTTTATCTGAGGAGGTAGAAAAAGATATGCTTGATTA 239
Query 347 TCTTTACACAACTCAATACCAAATGAGAGGCATTGTTGCTATATCTGTT-GGTTGTATCG 405
||||||||| | |||||| ||||||||||||||||||||||||||| || ||||||||||
Sbjct 240 TCTTTACACTATTCAATATCAAATGAGAGGCATTGTTGCTATATCT-TTAGGTTGTATCG 298
Query 406 GTGATAGAAACAATGAATATTTCACGCACGCTCTCTACATGCGATTCCAAAAGAA-GGAA 464
||||||||||||||||| ||| |||||||||||||| |||||||||||| | ||| ||||
Sbjct 299 GTGATAGAAACAATGAAGATTACACGCACGCTCTCTTCATGCGATTCCAGA-GAAAGGAA 357
Query 465 GACCTTGACAAGTTCTATGAGAACCCTTTCTTCTTGAAAGTTCTCAATGAATATGTTACA 524
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GACCTTGGCAAGTTCTATGAGAACCCTTTCTTCTTGAAAGTTCTCAATGAATATGTTACA 417
Query 525 CCATTCTGCCATGGGCTAACTAATGTGGACTATGAATCAGAGGTTGAAGATGACATCCTT 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CCATTCTGCCATGGGCTAACTAATGTGGACTATGAATCAGAGGTTGAAGATGACATCCTT 477
Query 585 GCAATATTTAGAAAGGGGGAGGAGTACAACTATGGCGAAGAGTTTGTTCTTCTGATCACT 644
||||||||| ||||||| |||||||||||||| ||||||||||||||||||||| | ||
Sbjct 478 GCAATATTTCGAAAGGGCGAGGAGTACAACTACGGCGAAGAGTTTGTTCTTCTGGTTACA 537
Query 645 TTTGCTAAGAGCGCTTCCGAGAAGAACACTAAAGATGCAATGGATTCTTTTGCTCAGCTA 704
|||||||||| || |||||| ||||||||||||| |||||||||||||||||| ||||||
Sbjct 538 TTTGCTAAGAACGTTTCCGACAAGAACACTAAAGGTGCAATGGATTCTTTTGCACAGCTA 597
Query 705 ACTTCATCTCTTCCATCATTAATTGTCCAGTCCACACAAGGTTCAAACTTTAACGGCAGC 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 598 ACTTCATCTCTTCCATCATTAATTGTCCAGTCCACACAAGGTTCAAACTTTAACGACAGC 657
Query 765 AGTAAGGAATTCACACATGCAGCAGTAGTTCGATTCCGTTCCTTTGATGCCATGGAGATT 824
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AGTAAGGAATTCACTCATGCAGCAGTAGTTCGATTCCGTTCCTTTGATGCCATGGAGATT 717
Query 825 TTCTTTGAGGGCAGAGAGTATAAAGATATGTGGCGGTCGCAGTTTGAGCCGTTTATAGAA 884
||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 718 TTCGTCGAGGGCAGAGAGTATAAAGATATGTGGCGGTCGCAATTTGAGCCGTTTATAGAA 777
Query 885 AA-GTCAGAAGCTCTTCATTTCTCAGTGGATCCCGTTGGTACCGACGTCATGT 936
|| | ||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 778 AAAG-CAGTAGCTCTTCATTTCTCAGTGGATCCTGTTGGTACCGACGTCATGT 829
> Ahg901459 jgi|Araly1|901459|Al_scaffold_0004_2109
Length=462
Score = 466 bits (252), Expect = 3e-130
Identities = 394/460 (86%), Gaps = 19/460 (4%)
Strand=Plus/Minus
Query 1079 CCAACAAAAGAAAGATTTTA-AGCTCCCATTTTCCAGAGACGTTCCTTAACACCGAGCTT 1137
||||||||||||||| ||| ||||| | |||||||||||||||||||||||| |||||
Sbjct 449 CCAACAAAAGAAAGA--TTAGAGCTCTC--TTTCCAGAGACGTTCCTTAACACCAAGCTT 394
Query 1138 GCAGCAAACATAGACATCATGTGACGCTTGTACTATCTGATCATGAGAGAGGCTACGAGC 1197
|||| |||||||||||||||||||||| || || || ||||||||||| ||||| |||||
Sbjct 393 GCAGAAAACATAGACATCATGTGACGCCTGAACAATTTGATCATGAGAAAGGCTGCGAGC 334
Query 1198 ACCCCAATTACTCATACATAACTCCTTATCTTTCGTCACTCCTTCATGCCCCAAATACAC 1257
|||||||||||| |||||| ||||||||||||| ||||||| || |||||| || |||
Sbjct 333 TCCCCAATTACTCCTACATATCTCCTTATCTTTCCTCACTCCCTCGTGCCCC-AA-ACA- 277
Query 1258 CTTC--A-CAATCGT-CTCAAACGAGCTACT-CAAGAGCAACGGATG-GAGATAGTGCCT 1311
||| | | | | ||||||||| ||| | | |||| ||| | | |||||||||||
Sbjct 276 -TTCGGACCGGCCCTGCTCAAACGAACTATTGC-GGAGCCACGTA-GCCAGATAGTGCCT 220
Query 1312 TATGTGGACAAGTCTCCAGATATCCAACTGATGGTGGAATCTCTCGAGCTTGTCCTTGTC 1371
||||| || ||||||||| || |||||||||||| ||||||||||||| || ||||||||
Sbjct 219 TATGTCGAGAAGTCTCCATATCTCCAACTGATGGCGGAATCTCTCGAGATTATCCTTGTC 160
Query 1372 TTGGCTGTTCCATACGCCGACAAAAGTGATTGTCTGATCTTCCAAGAAACTTCTAAGGAC 1431
||| |||||||| || || || ||||||||||||| ||| ||||||||||||| ||||||
Sbjct 159 TTGACTGTTCCAGACTCCAACGAAAGTGATTGTCTCATCCTCCAAGAAACTTCGAAGGAC 100
Query 1432 GTCGGGGACGTACTTACAGTGAGACAACTGAATGATGAGACAGC-GAGTACCAACACATA 1490
|||||| | | |||||||||| ||||||| ||||||||||||| || ||||||||||||
Sbjct 99 GTCGGGCATGCGCTTACAGTGAAACAACTGGATGATGAGACAGCGGA-TACCAACACATA 41
Query 1491 GTTGGAGAATATCCGGTGGAGGATCGGAACCACGGGGTGT 1530
||||||||||||||||||||||||||||||||| ||||||
Sbjct 40 GTTGGAGAATATCCGGTGGAGGATCGGAACCACCGGGTGT 1
> Ahg901060 jgi|Araly1|901060|Al_scaffold_0004_1710
Length=402
Score = 326 bits (176), Expect = 5e-88
Identities = 317/382 (83%), Gaps = 21/382 (5%)
Strand=Plus/Minus
Query 1098 AAGCTCCCATTTTCCAGAGACGTTCCTTAACACCGAGCTTGCAGCAAACATAGACATCAT 1157
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 400 AAGCTCTCATTTTCCAGACACGTTCCTTAACACCGAGCTTGCAGCAAACATAGACATCAT 341
Query 1158 GTGACGCTTGTACTATCTGATCATGAGAGAGGCTACGAGCACCCCAATTACTCATACATA 1217
||||||| || || |||||||||| ||| ||| ||||||| ||||| |||||| ||||||
Sbjct 340 GTGACGCCTGAACAATCTGATCATCAGAAAGGTTACGAGCTCCCCAGTTACTCCTACATA 281
Query 1218 ACTCCTTATCTTTCGTCACTCCTTCATGCCCCAAATACACCTTCACAATCGTCTCAAACG 1277
||||||||||||| ||||||||| | |||||| || ||| ||||||| |||||||||
Sbjct 280 TCTCCTTATCTTTCCTCACTCCTTGGTATCCCAAACACTCCTCCACAATCATCTCAAACG 221
Query 1278 AGCTACT-CAAGAGCAACGGATGG-AGATAGTGCCTTATGTGGACAAGTCTCCAGATATC 1335
| | | | | ||||| ||| | || ||||||| |||||||| |||||| ||||| || ||
Sbjct 220 AAC-ATTTCCAGAGCCACGTA-GGCAGATAGTCCCTTATGTCGACAAGCCTCCATATCTC 163
Query 1336 CAA-CTGATGGTGGAATCTCTCGAGCTTGTCCTTGTCTTGGCTGTTCCATACGCCGACAA 1394
||| | | || ||||||||||| ||| || | | | ||| || || ||||
Sbjct 162 CAATC-GTTGATGGAATCTCTC----TTG-----GT-TA---T-T-CCAGACTCCAACAA 119
Query 1395 AAGTGATTGTCTGATCTTCCAAGAAACTTCTAAGGACGTCGGGGACGTACTTACAGTGAG 1454
|||||||||| |||||||||||||||||||||||| ||| |||| ||| ||||||||||
Sbjct 118 CAGTGATTGTCCGATCTTCCAAGAAACTTCTAAGGATGTCAGGGATGTAGTTACAGTGAG 59
Query 1455 ACAACTGAATGATGAGACAGCG 1476
||||||| ||||||||||||||
Sbjct 58 ACAACTGGATGATGAGACAGCG 37
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70733584965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5