BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32510.1
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933819 jgi|Araly1|933819|scaffold_401807.1 1602 0.0
> Ahg933819 jgi|Araly1|933819|scaffold_401807.1
Length=1160
Score = 1602 bits (867), Expect = 0.0
Identities = 1041/1125 (93%), Gaps = 12/1125 (1%)
Strand=Plus/Plus
Query 1 ATGGAATGGACTAGAGGAAGAATCCTAGGCCGAGGCTCTACAGCCACCGTATACGCCGCC 60
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 22 ATGGAATGGACTAGAGGAAGAATCCTAGGCCGAGGCTCGACAGCCACCGTCTACGCCGCC 81
Query 61 GCAG-GTCACAATTCAGATGAAATCCTCGCCGTTAAATCATCTGAGGTTCACCGCTCAGA 119
| | |||||||||||||||||||||||||||||||||| || ||| |||||| ||||||
Sbjct 82 AC-GTGTCACAATTCAGATGAAATCCTCGCCGTTAAATCCTCCGAGCTTCACCACTCAGA 140
Query 120 GTTCTTGCAAAGAGAAGCCAAGATTCTCTCGTCGTT-AAGTTCTCCTTACGTGATCGGAT 178
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 141 GTTCTTGCAAAGAGAAGCCAAGATTCTCTCGTCGTTGAA-TTCTCCTTACGTGATCGGAT 199
Query 179 ACAGAGGATCAGAAACCAAGAGAGAGTCAAACGGTGTCGTTATGTATAATCTTTTGATGG 238
||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||
Sbjct 200 ACAGAGGATCAGAAACCAAAAGAGAGTCAAACGGTGTCGTTACGTATAATATTTTGATGG 259
Query 239 AGTACGCACCGTATGGAACGTTGACCGATGCGGCGGCGAAAGACGGGGGAAGAGTCGACG 298
||| ||||||||| ||||||||||| || |||||||||||| |||| || ||||||||||
Sbjct 260 AGTTCGCACCGTACGGAACGTTGACTGACGCGGCGGCGAAAAACGGAGGCAGAGTCGACG 319
Query 299 AGACTCGGGTAGTGAAGTACACGCGCGATATACTAAAAGGATTGGAGTATATACACTCGA 358
|||||||||| ||||||||||||||||| ||||||| ||||||||||||| |||||||||
Sbjct 320 AGACTCGGGTCGTGAAGTACACGCGCGAGATACTAAGAGGATTGGAGTATGTACACTCGA 379
Query 359 AAGGAATCGTGCATTGTGATGTAAAGGGTAGTAACGTGGTTATTTCGGAGAAAGGCGAGG 418
|||| ||||||||||| ||||||||||| |||||||||||| || |||||||||||||||
Sbjct 380 AAGGTATCGTGCATTGCGATGTAAAGGGAAGTAACGTGGTTCTTGCGGAGAAAGGCGAGG 439
Query 419 CCAAGATTGCGGATTTTGGTTGTGCGAAACGGGTTGACCCGGTGTTCGAGTCGCCGGTTA 478
|||| ||||| ||||| || ||||| ||||||||||||| | |||||||| |||||||
Sbjct 440 CCAAAATTGCAGATTTCGGGTGTGCAAAACGGGTTGACCAAGAATTCGAGTCACCGGTTA 499
Query 479 TGGGAACGCCGGCTTTTATGGCTCCAGAGGTGGCGCGTGGAGAGAAACAGGGGAAGGAGA 538
||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 500 TGGGAACGCCGGCGTTTATGGCTCCGGAGGTGGCGCGTGGGGAGAAACAGGGGAAGGAGA 559
Query 539 GTGATATATGGGCGGTTGGTTGTACGATGATAGAGATGGTTACGGGTTCTCCACCGTGGA 598
||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||
Sbjct 560 GTGATATATGGGCGGTTGGGTGTACGGTGATTGAGATGGTTACGGGTTCTCCACCGTGGA 619
Query 599 CGA-AGGCAG-ATTCGAGGGAGGATCCGGTTTCGGTTCTTTATCGGGTCGGGTATTCGAG 656
| | |||| | |||||||||||||||||||||||||||||||||| |||||||||| | |
Sbjct 620 C-AGAGGC-GAATTCGAGGGAGGATCCGGTTTCGGTTCTTTATCGAGTCGGGTATTTGGG 677
Query 657 TGAAACTCCGGAGCTTCCTTGTTTGCTTGCGGAAGAAGCAAAAGATTTTTTGGAAAAGTG 716
|| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 678 TGCGACTCCGGAGCTTCCTTGTTTGCTTGCGGAAGAAGCAAAGGACTTTTTGGAAAAGTG 737
Query 717 TTTGAAGAGGGAAGCAAATGAAAGATGGACAGCGACACAACTCCTAAACCATCCTTTTTT 776
|||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 738 TTTGAAGAGGGAAGCAAAGGAGAGATGGACAGCGACACAACTCCTAAACCATCCGTTTTT 797
Query 777 GACAACTAAACCAGACATTGAACCAG-TTCTGGTTCCCGGTTTGATTTCAAACTCACCGA 835
||| |||||||| ||||||||||| | || ||||| |||||||| |||||| ||||||||
Sbjct 798 GACTACTAAACCGGACATTGAACCGGCTT-TGGTTTCCGGTTTGGTTTCAAGCTCACCGA 856
Query 836 CAAGTGTGACAGATCAAACGTTTTGGAGATCAGTAGAGGAAGAGGAAGAAGAAGAAACAG 895
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 857 CAAGTGTGACAGATCAAACGTTTTGGAGATCAGCAGAAGAAGAGGAAGAAGAAGAAACAG 916
Query 896 AGGAAATACAGAAGGATTCGAGAGATCTTGATCGTTTAAGCTTGTGGGGTTGTTACTCGG 955
|| |||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||
Sbjct 917 AGCAAATACAGAAGGATTCGAGAGATCTTGACCGTTTAAACTTGTGGGGTTGTTATTCGG 976
Query 956 AGAGGATCGGACGGCTGAAG-TGTGTTGGTGGTTTGGATGGGACCAGATGTGATATGGAG 1014
| ||||||||||||||| || ||| ||||||||||||||||||||||||| |||||||||
Sbjct 977 AAAGGATCGGACGGCTG-AGATGTCTTGGTGGTTTGGATGGGACCAGATGGGATATGGAG 1035
Query 1015 GGTGGGGATTGGATTATGGTGAGAGCGAGGTGTGAAGGAACAATGATTAGTGGGTCACAA 1074
|||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1036 GGTGGGGATTGGATTACGGTGAGAGTGAGATGTGAAGGAACAATGATTAGTGGGTCACAT 1095
Query 1075 AAGGAATTGATTATTAGTGAAAATGTATTGGTGGGGGAATTGTAA 1119
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 GAGGAATTGATTATTAGTGAAAATGTATTGGTGGGGGAATTGTAA 1140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41706471198
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5