BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G32550.1 Length=1235 Score E Sequences producing significant alignments: (Bits) Value Ahg933823 jgi|Araly1|933823|scaffold_401811.1 1362 0.0 > Ahg933823 jgi|Araly1|933823|scaffold_401811.1 Length=1010 Score = 1362 bits (737), Expect = 0.0 Identities = 926/1017 (91%), Gaps = 14/1017 (1%) Strand=Plus/Plus Query 7 GAGATTTTCTCCGACCAATCCATGTCGGAAAACATGGTGAATCTACCGGATTCTTTGTAC 66 |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 1 GAGATTTTCTCCGACCAATCCATGTCGGAAAATGTGGTCAATCTACCGGATTCTTTGTAT 60 Query 67 GAGGACTACAGTAAACTCAAGTTGACTTC--ACCC-TCCAACGCTTCTTCATCCTCCTCA 123 |||||||| |||||||||||||||||||| ||| || ||||||| ||| |||||| Sbjct 61 GAGGACTATAGTAAACTCAAGTTGACTTCGTCCCCGCCCTACGCTTCGTCA---TCCTCA 117 Query 124 GCTCCTCCGCCCAGGCTCAGCGTCGTAGCTCATCCAACGGTAGAGATGATTATCCAGTGG 183 ||||||||||| |||||| |||||||||||| || || |||||||||||| |||||||| Sbjct 118 GCTCCTCCGCCGGGGCTCACCGTCGTAGCTCAGCCGACCGTAGAGATGATTCTCCAGTGG 177 Query 184 GTCTGTGATATTCATAAACCGAAGTCATACATGTCTGATTTTGCGCTGCATAATCTCGCC 243 |||| |||| |||||||||| || ||| || || |||||| |||||||||||||||||| Sbjct 178 GTCTATGATCTTCATAAACCAAACTCACCCAAGTTTGATTTCGCGCTGCATAATCTCGCC 237 Query 244 TATCATAGGAACGACTTTGAGTTCTTGCCGAGTCTGTTATGGGAATCTAAAAATACTGTG 303 ||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 TATCATAGGGACAATTTTGAGTTCTTGCCGAGTCTGTTATGGGAATCTAAAAATACTGTG 297 Query 304 TACATCATGTTGCAGGAGGTTTTTGAAGCCTACAGACACCTCGCAGGACACATCTCACTT 363 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 298 TACATCATGTTGCAGGAGGTTTTTGAAGCCTACAGACACCTCGTAGGACACATCTCACTT 357 Query 364 CGATTGTTCCCTCATCCGTTGAATCCACTTCGAGTGTACAATGTTTTTCTTTTGTTCCAG 423 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 358 CGATTGTTCCCTCATCCATTGAATCCACTTCGAGTGTACAATGTTTTGCTTTTGTTCCAG 417 Query 424 AGCATGGCTTGTCACCCAGACACAAGCCGTCAGTTTCTTAGGGCTAAGATGCCAAATTAT 483 |||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct 418 AGCATGGCTTATCACCCAGACACAAGCCGTCGGTTTCTTAGGGCTAAGATGCCAAACTAT 477 Query 484 TTCTATCCTCTGATGGACACT-GGTCTCATTGATAAAAGTGACGAATGCATGAGGCTTGC 542 ||||||||| |||||||| || |||||||| ||||| || |||||||| |||||||||| Sbjct 478 TTCTATCCTTTGATGGAC-CTTGGTCTCATCGATAAGCGTCACGAATGCCTGAGGCTTGC 536 Query 543 TGCGTTGGGTGTCATTGCTCATATGTTGAAGGCGTCTGAAGATGGAGCTGTTAATCGTTA 602 ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 537 TGCATTGGGTGTCATTGCTCATATGTTGAAGGCGTCTGAAGATGGAGCTGTTAGTCGTTA 596 Query 603 CCTAATGGAAAGTGGTGTTGTTGGTTTCTGCGTTAAACCCATTGAGTTTGGCTCTA-CAG 661 ||||||||||||||||| ||| ||||| |||| ||||||| ||||||||||||||| | | Sbjct 597 CCTAATGGAAAGTGGTGCTGTAGGTTTTTGCGCTAAACCCGTTGAGTTTGGCTCTATC-G 655 Query 662 AAACaaaaaaaGTTGCTTTATACATACTCGACAAGATTATGTCGACGGATCAGGGGCTTT 721 ||||||||| |||||| |||||||||| |||||||||||||| || ||| |||||||| Sbjct 656 AAACAAAAACTGTTGCTGTATACATACTTGACAAGATTATGTCAACTGATGAGGGGCTTC 715 Query 722 ATTACTGCTGCGTCTTGGCTGATCGGTTTTACGTTATCGATGAGCTCCTTAAGAAGGTGC 781 |||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||| Sbjct 716 ATTACTGCTGCGTCTTGGCTGATCGGTTTTTCGTTATCGATGAACTCCTTAAGAAGCTGC 775 Query 782 TCTTCTATCTTTCTAACATGGT-CAGACCTCCTTCATCCTTGTTCAGCCTTGTTACTGGT 840 || ||||||||||| |||| | ||||||| |||| | |||||||| |||||||| |||| Sbjct 776 TCGTCTATCTTTCTTCCATG-TACAGACCTTCTTCCTGCTTGTTCAACCTTGTTATTGGT 834 Query 841 TGCTACGTCAAGCTCTCCCAGAACTCCAGGGCTCGTAACGGAATAAGGCGATACACGCCT 900 ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 835 TGCTACGTCAAGCTCTCCCAGAAATCCAGGGCTCGTGACGGAATAAGGCGATACACGCCT 894 Query 901 TTCTTGCTGTTTGACGGCACCTTTTCCAGATTATATGCTGAGGATCCAGTGGCTGCTAAC 960 |||||||||||||||||||||||| | ||||||||||||||||| || || |||| |||| Sbjct 895 TTCTTGCTGTTTGACGGCACCTTTGCAAGATTATATGCTGAGGACCCTGTCGCTGATAAC 954 Query 961 AATCGAATTCAGCTGCTTCAGAATCTGGACAACTAAAGCAATGAAGTACTCG-AGAC 1016 ||||| ||||||||| ||||||||||||| ||||||||||||||||||| || |||| Sbjct 955 AATCGGATTCAGCTGATTCAGAATCTGGAAAACTAAAGCAATGAAGTAC-CGGAGAC 1010 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46128729570 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5