BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32550.1
Length=1235
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933823 jgi|Araly1|933823|scaffold_401811.1 1362 0.0
> Ahg933823 jgi|Araly1|933823|scaffold_401811.1
Length=1010
Score = 1362 bits (737), Expect = 0.0
Identities = 926/1017 (91%), Gaps = 14/1017 (1%)
Strand=Plus/Plus
Query 7 GAGATTTTCTCCGACCAATCCATGTCGGAAAACATGGTGAATCTACCGGATTCTTTGTAC 66
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1 GAGATTTTCTCCGACCAATCCATGTCGGAAAATGTGGTCAATCTACCGGATTCTTTGTAT 60
Query 67 GAGGACTACAGTAAACTCAAGTTGACTTC--ACCC-TCCAACGCTTCTTCATCCTCCTCA 123
|||||||| |||||||||||||||||||| ||| || ||||||| ||| ||||||
Sbjct 61 GAGGACTATAGTAAACTCAAGTTGACTTCGTCCCCGCCCTACGCTTCGTCA---TCCTCA 117
Query 124 GCTCCTCCGCCCAGGCTCAGCGTCGTAGCTCATCCAACGGTAGAGATGATTATCCAGTGG 183
||||||||||| |||||| |||||||||||| || || |||||||||||| ||||||||
Sbjct 118 GCTCCTCCGCCGGGGCTCACCGTCGTAGCTCAGCCGACCGTAGAGATGATTCTCCAGTGG 177
Query 184 GTCTGTGATATTCATAAACCGAAGTCATACATGTCTGATTTTGCGCTGCATAATCTCGCC 243
|||| |||| |||||||||| || ||| || || |||||| ||||||||||||||||||
Sbjct 178 GTCTATGATCTTCATAAACCAAACTCACCCAAGTTTGATTTCGCGCTGCATAATCTCGCC 237
Query 244 TATCATAGGAACGACTTTGAGTTCTTGCCGAGTCTGTTATGGGAATCTAAAAATACTGTG 303
||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TATCATAGGGACAATTTTGAGTTCTTGCCGAGTCTGTTATGGGAATCTAAAAATACTGTG 297
Query 304 TACATCATGTTGCAGGAGGTTTTTGAAGCCTACAGACACCTCGCAGGACACATCTCACTT 363
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 298 TACATCATGTTGCAGGAGGTTTTTGAAGCCTACAGACACCTCGTAGGACACATCTCACTT 357
Query 364 CGATTGTTCCCTCATCCGTTGAATCCACTTCGAGTGTACAATGTTTTTCTTTTGTTCCAG 423
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 358 CGATTGTTCCCTCATCCATTGAATCCACTTCGAGTGTACAATGTTTTGCTTTTGTTCCAG 417
Query 424 AGCATGGCTTGTCACCCAGACACAAGCCGTCAGTTTCTTAGGGCTAAGATGCCAAATTAT 483
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 418 AGCATGGCTTATCACCCAGACACAAGCCGTCGGTTTCTTAGGGCTAAGATGCCAAACTAT 477
Query 484 TTCTATCCTCTGATGGACACT-GGTCTCATTGATAAAAGTGACGAATGCATGAGGCTTGC 542
||||||||| |||||||| || |||||||| ||||| || |||||||| ||||||||||
Sbjct 478 TTCTATCCTTTGATGGAC-CTTGGTCTCATCGATAAGCGTCACGAATGCCTGAGGCTTGC 536
Query 543 TGCGTTGGGTGTCATTGCTCATATGTTGAAGGCGTCTGAAGATGGAGCTGTTAATCGTTA 602
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 537 TGCATTGGGTGTCATTGCTCATATGTTGAAGGCGTCTGAAGATGGAGCTGTTAGTCGTTA 596
Query 603 CCTAATGGAAAGTGGTGTTGTTGGTTTCTGCGTTAAACCCATTGAGTTTGGCTCTA-CAG 661
||||||||||||||||| ||| ||||| |||| ||||||| ||||||||||||||| | |
Sbjct 597 CCTAATGGAAAGTGGTGCTGTAGGTTTTTGCGCTAAACCCGTTGAGTTTGGCTCTATC-G 655
Query 662 AAACaaaaaaaGTTGCTTTATACATACTCGACAAGATTATGTCGACGGATCAGGGGCTTT 721
||||||||| |||||| |||||||||| |||||||||||||| || ||| ||||||||
Sbjct 656 AAACAAAAACTGTTGCTGTATACATACTTGACAAGATTATGTCAACTGATGAGGGGCTTC 715
Query 722 ATTACTGCTGCGTCTTGGCTGATCGGTTTTACGTTATCGATGAGCTCCTTAAGAAGGTGC 781
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||
Sbjct 716 ATTACTGCTGCGTCTTGGCTGATCGGTTTTTCGTTATCGATGAACTCCTTAAGAAGCTGC 775
Query 782 TCTTCTATCTTTCTAACATGGT-CAGACCTCCTTCATCCTTGTTCAGCCTTGTTACTGGT 840
|| ||||||||||| |||| | ||||||| |||| | |||||||| |||||||| ||||
Sbjct 776 TCGTCTATCTTTCTTCCATG-TACAGACCTTCTTCCTGCTTGTTCAACCTTGTTATTGGT 834
Query 841 TGCTACGTCAAGCTCTCCCAGAACTCCAGGGCTCGTAACGGAATAAGGCGATACACGCCT 900
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 835 TGCTACGTCAAGCTCTCCCAGAAATCCAGGGCTCGTGACGGAATAAGGCGATACACGCCT 894
Query 901 TTCTTGCTGTTTGACGGCACCTTTTCCAGATTATATGCTGAGGATCCAGTGGCTGCTAAC 960
|||||||||||||||||||||||| | ||||||||||||||||| || || |||| ||||
Sbjct 895 TTCTTGCTGTTTGACGGCACCTTTGCAAGATTATATGCTGAGGACCCTGTCGCTGATAAC 954
Query 961 AATCGAATTCAGCTGCTTCAGAATCTGGACAACTAAAGCAATGAAGTACTCG-AGAC 1016
||||| ||||||||| ||||||||||||| ||||||||||||||||||| || ||||
Sbjct 955 AATCGGATTCAGCTGATTCAGAATCTGGAAAACTAAAGCAATGAAGTAC-CGGAGAC 1010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46128729570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5