BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32560.1
Length=1367
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482182 jgi|Araly1|482182|fgenesh2_kg.4__1242__AT2G32560.1 2102 0.0
Ahg933004 jgi|Araly1|933004|scaffold_400992.1 1275 0.0
> Ahg482182 jgi|Araly1|482182|fgenesh2_kg.4__1242__AT2G32560.1
Length=1357
Score = 2102 bits (1138), Expect = 0.0
Identities = 1290/1363 (95%), Gaps = 11/1363 (1%)
Strand=Plus/Plus
Query 1 AAAGGCAGCACAATAATACTGTCTAAATGcttctctactttctcatcacttgtctctctt 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAGGCAACACAATAATACTGTCTAAATGCTTCTCTACTTTCTCATCACTTGTCTCTCTT 60
Query 61 tctttttctttaccaaatctctttctcttcCTCCATGGGCATCTGAAACCAAAACCTTGC 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTTTTTCTTTACCAAATCTCTATCTCTTCCTCCATGGGCATCTGAAACCAAAACCTTGC 120
Query 121 TCTCCTTCTACTTCATCAAGAATCCCTTTATGAACACCCTACATCAGACCAAACACGATC 180
|||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||
Sbjct 121 TCTCCTTCTACTTCATCAAGAATCCCTTCATGAATACCCTACATCAGACCACACACGATC 180
Query 181 CAGCCTCTCCGGTGATCGACCAAATGTCGGTTCTTGACCTCCCTGAGCTGGCTCTTGACT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAGCCTCTCCGGTGATCGACCAAATGTCGGTTCTTGACCTCCCTGAGCTGGCTCTTGACT 240
Query 241 GCATTCTTGACCTTCTTCCACCCTCTGGACTCTGCAGCATGGCTAGGGTTTGTAGCTCCT 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCATTCTCGACCTTCTTCCACCCTCTGGACTCTGCAGCATGGCTAGGGTTTGTAGCTCCT 300
Query 301 TGAGGGAGAGATGTGTTAGTGATCATCTATGGGAGAAACATTTGAAGACCAAATGGGGCA 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGAGGGAGAGATGTGTGAGTGATCATCTATGGGAGAAACATTTGAAGACCAAATGGGGCA 360
Query 361 AAATCCTTGGCCCTGCTGCTCACAGAGAGTGGCAATGCTATATCTCCTCTTCCACATATC 420
|||| |||||||||||||||||||||||||||||||||| |||||| | | |||||||||
Sbjct 361 AAATTCTTGGCCCTGCTGCTCACAGAGAGTGGCAATGCTTTATCTC-T-T-CCACATATC 417
Query 421 ATCTTGATTCTCCTCATCATCAAACTGGGAATCTTGGTTTTGCCAAAATCATCTCTCTGA 480
||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||
Sbjct 418 ATCTTGATTCTCCTCATCAACAAACTGGGAATCTTGGTTTTGCCAAAATCGTTTCTCTGA 477
Query 481 TCCGATCTCTTTCATCCGTTTTCCGAGAGGATAAACAAAGGAGGGGATATGCATCTTCTC 540
||||||| |||||||||||||| ||||| |||||||||||||||| |||| |||||||||
Sbjct 478 TCCGATCGCTTTCATCCGTTTTTCGAGATGATAAACAAAGGAGGGTATATTCATCTTCTC 537
Query 541 TGCCACTTGATTCCAGCATGAGCTGCTACCTCTCCCTTGAAACAGGTCGTTTTTGGTTCC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TGCCACTTGATTCCAGCATGAGCTGCTACCTCTCCCTTGAAACAGGTCGTTTTTGGTTCC 597
Query 601 CAGCTCAAGTTTACAACCGTGAGAATGGACATGTAGGGTTCATGTTGTCATGCTATGATG 660
| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 598 CTGCTCAAGTCTACAACCGTGAGAATGGGCATGTAGGGTTCATGTTGTCATGCTATGATG 657
Query 661 CGGAGCTCAGCTATGATACTCACACGGATACGTTCCAAGCCAGGTATCCACCACATGGTA 720
| ||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||
Sbjct 658 CCGAGCTCAGCTATGATACTCACACTGATACTTTCCTAGCCAGGTATCCACCACATGGTA 717
Query 721 GACGAGCATCTGCGATTGAAAAGGGTGTGACATGGGATAGAATAAGAGCAGCTCCCATTG 780
|||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 718 GACGAGCAGCTGCGGTTGAAAAGGGTGTGACATGGGATAGAATAAGAGAAGCTCCCATTG 777
Query 781 ATGCATCACCTCATCTTCTCCATGTATCAGATTCTTTAAAAGAGTTGAAACCTGGAGATC 840
||||||| ||||||| |||| |||| ||||||||||||||||| || |||||||||||||
Sbjct 778 ATGCATCGCCTCATCATCTCTATGTGTCAGATTCTTTAAAAGAATTAAAACCTGGAGATC 837
Query 841 ACATCGAAATCCAGTGGAGAAGGAACAAAGAGTTCCCATATGGATGGTGGTATGGTCTTG 900
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 838 ACATCGAGATCCAGTGGAGAAGGAACAAAGAGTTCCCATATGGATGGTGGTATGGTGTTG 897
Query 901 TTCGCCACTTGGAATCCTGTGATGGAGATCAT-AACCATTGCCATTGCCATCTTAGTGAG 959
|| |||| |||||||||||||||||||||| | ||||||||||||||||| ||||| |||
Sbjct 898 TTGGCCATTTGGAATCCTGTGATGGAGATC-TCAACCATTGCCATTGCCAACTTAGCGAG 956
Query 960 ACGGTAGTGTTGGAATTCAACCAGTACACAGTCGGATCAAGGTGGAGAAGAACGATGATC 1019
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 957 ACGGTAGTGTTGAAATTCAACCAGTACACAGTCGGATCGAGGTGGAGAAGAACGATGGTG 1016
Query 1020 ATGAGAGATCATAAAGAGGAAGGTAACGAAGAAGACGGGTTCTATGGAGGAATCCGAAAG 1079
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1017 AGGAGAGATCATAAAGAGGAAGGTAATGAAGAAGACGGGTTCTATGGAGGAATCCGAAAG 1076
Query 1080 CTAAATTGTAAAGAAGAGATTGCAATGTGGAAACGTCACTGGCCTTGCTCCATCTTGGAA 1139
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1077 CTAAATTGTAAAGAAGAGATTGCAATGTGGAAGCGTCACTGGCCTTGCTCCATCTTGGAA 1136
Query 1140 TAGCATTAAAGAAGCTTTGCTTAAACACATGGGGAAAGATATTACACATCACTATACTGA 1199
|||||| || |||||||||||||||||| |||||||| || |||||||||||| ||| ||
Sbjct 1137 TAGCATGAA-GAAGCTTTGCTTAAACACTTGGGGAAATATGTTACACATCACTGTACAGA 1195
Query 1200 GAGTAGGTTGTTAAATTTAGACGTCTATTCTCTTTTATCCAATGTATGGTTGATCGTGAA 1259
||||||| |||| ||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1196 GAGTAGGATGTTGAATATAGACGTCTATTCTCTTTTATCCAAAGTATGGTTGATCGTGAA 1255
Query 1260 TTATTTGTTGGGAATAAAGTCTA--TACGTGAAATTATTGTGTCACTTCGATTTGAGAAA 1317
||||||||| |||||| |||| | ||||||||| ||||||||||||| |||||||||||
Sbjct 1256 TTATTTGTTTGGAATATAGTCAAAATACGTGAAACTATTGTGTCACTTGGATTTGAGAAA 1315
Query 1318 TATTGTGTTGTATAGGGAAAACT-TAATACAATTGATTTGAAT 1359
||||||| |||||||| |||| | |||||||||||||||||||
Sbjct 1316 TATTGTGGTGTATAGG-AAAA-TATAATACAATTGATTTGAAT 1356
> Ahg933004 jgi|Araly1|933004|scaffold_400992.1
Length=1156
Score = 1275 bits (690), Expect = 0.0
Identities = 997/1144 (87%), Gaps = 26/1144 (2%)
Strand=Plus/Plus
Query 12 AATAATACTGTCTAAATGcttctctactttctcatcacttgtctctctttcttt-ttctt 70
|||| |||| ||||||||||||||||||| |||||||||||||||||||| ||| |||||
Sbjct 6 AATAGTACTTTCTAAATGCTTCTCTACTTACTCATCACTTGTCTCTCTTT-TTTCTTCTT 64
Query 71 taccaaatctctt-tctcttcCTCCATGGGCATCTGAAACCAAAACCTTGCTCTCCTTCT 129
| |||||||| || | ||||||||||||| |||| |||||||||| |||| ||||||||
Sbjct 65 TGCCAAATCT-TTACCCCTTCCTCCATGGGTATCTAAAACCAAAACTTTGCACTCCTTCT 123
Query 130 ACTTCAT-CAAGAATC-CCTTTATGAACACCCTACA-TCAGACCAAACACGATCCAGCCT 186
||||| | |||||| | |||| ||||| ||||| || |||| || ||||| |||||
Sbjct 124 ACTTC-TCCAAGAA-CTTTTTTACGAACAGTCTACACCCA-ACCACACCCGATCTAGCCT 180
Query 187 CTCCGGTGATCGACCAAATGTCGGTTCTTGACCTCCCTGAGCTGGCTCTTGACTGCATTC 246
|||||||| ||| |||||||||| | |||||||||||||| || |||| || |||||||
Sbjct 181 CTCCGGTGCTCGGCCAAATGTCGATACTTGACCTCCCTGACCTTCCTCTCGATTGCATTC 240
Query 247 TTGACCTTCTTCCACCCTCTGGACTCTGCAGCATGGCTAGGGTTTGTAGCTCCTTGAGGG 306
||||| |||| ||||||||||||| || |||||||||||||| |||||||| || || |
Sbjct 241 TTGACAATCTTTCACCCTCTGGACTATGTAGCATGGCTAGGGTCTGTAGCTCGTTAAGAG 300
Query 307 AGAGATGTGTTAGTGATCATCTATGGGAGAAACATTTGAAGACCAAATGGGGCAAAATCC 366
|||||||||| ||||||||||| ||||||||||| |||||||| |||||||| |||||||
Sbjct 301 AGAGATGTGTAAGTGATCATCTGTGGGAGAAACACTTGAAGACAAAATGGGGAAAAATCC 360
Query 367 TTGGCCCTGCTGCTCACAGAGAGTGGCAATGCTATATCTCCTCTTC-CACATATCATCTT 425
|||| ||| ||||||||| ||||||||||||| ||||| |||||| | |||||||||||
Sbjct 361 TTGGACCTTCTGCTCACAAAGAGTGGCAATGC--TATCT-CTCTTCTC-CATATCATCTT 416
Query 426 GATTCTCCTCATCATCAAACTGGGAATCTTGGTTTTG-CCAAAATCATCTCTCTGATCCG 484
|||||||||||||| |||||| | ||| ||| ||| |||||||||| ||||| || ||
Sbjct 417 GATTCTCCTCATCACCAAACTAGTCATCATGG-ATTGACCAAAATCATATCTCTTATTCG 475
Query 485 ATCTCTTTCATCCG-TTTTCCGAGAGGATAAACAAAGGAGGGGATATGCATCTTCTCTGC 543
||||||||||| || |||| |||| ||||| || || ||| ||||| |||||||| | |
Sbjct 476 ATCTCTTTCAT-CGATTTTAGGAGATGATAATCATAGAAGGAGATATCCATCTTCTATTC 534
Query 544 CACTTGATTCCAGCATGAGCTGCTACCTCTCCCTTGAAACAGGTCGTTTTTGGTTCCCAG 603
| |||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 535 CTCTTGATTCTACCATGAGCTTCTACCTCTCCCTTGAAACAGGTCGTTTTTGGTTCCCAG 594
Query 604 CTCAAGTTTACAACCGTGAGAATGGACATGTAGGGTTCATGTTGTCATGCTATGATGCGG 663
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 595 CTCAAGTTTACAACCGTGAGAATGGACATGTAGGGTTCATGTTGTCATGCTATGATGCTG 654
Query 664 AGCTCAGCTATGATACTCACACGGATACGTTCCAAGCCAGGTATCCACCACATGGTAGAC 723
||||||||||||| || ||||| |||| || ||||| |||||||||||||||||||||
Sbjct 655 AGCTCAGCTATGACACCCACACTAATACTTTTCAAGCTAGGTATCCACCACATGGTAGAA 714
Query 724 GAGCA-TCTGCGATTGAAAAGGGTGTGACATGGGATAGAATAAGAGCAGCTCCCATTGAT 782
||||| | |||||||||||||| |||||||||||| || |||||||||||||||||||||
Sbjct 715 GAGCAAT-TGCGATTGAAAAGGATGTGACATGGGAAAGGATAAGAGCAGCTCCCATTGAT 773
Query 783 GCATCACCTCATCTTCTCCATGTATCAGATTCTTTAAAAGAGTTGAAACCTGGAGATCAC 842
||||||||||||| |||| |||| ||||||||| |||| || || |||||||||||||||
Sbjct 774 GCATCACCTCATCATCTCTATGTGTCAGATTCTCTAAACGAATTAAAACCTGGAGATCAC 833
Query 843 ATCGAAATCCAGTGGAGAAGGAACAAAGAGTTCCCATATGGATGGTGGTATGGTCTTGTT 902
|| || |||||||||||||||||||||||||| || ||||||||||||||| || |||||
Sbjct 834 ATAGAGATCCAGTGGAGAAGGAACAAAGAGTTTCCTTATGGATGGTGGTATAGTGTTGTT 893
Query 903 CGCCACTTGGAATCCTGTGATGG-AGATCATAACCATTGCCATTGCCATCTTAGTGAGAC 961
| ||||||||||| |||||||| | ||| ||||||||| || |||||| |||| ||||
Sbjct 894 GGACACTTGGAATCTTGTGATGGCA-ATCTTAACCATTGTCAATGCCATATTAGCGAGAT 952
Query 962 GGTAGTGTTGGAATTCAACCAGTACACAGTCGGATCAAGGTGGAGAAGAACGATGAT--- 1018
| | ||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 953 GATGGTGTTGGAATTTAACCAGTACACAGTCGGATCAAGGTGGAGAAAAACGATGATTAA 1012
Query 1019 CATGAGAGATCATAAAGAGGAAGGTAACGAAGAAGACGGGTTCTATGGAGGAATCCGAAA 1078
|| ||||||||||| |||| |||||||||| ||||||||||||||||||||||| |||||
Sbjct 1013 CAGGAGAGATCATAGAGAGAAAGGTAACGAGGAAGACGGGTTCTATGGAGGAATTCGAAA 1072
Query 1079 GCTAAATTGTAAAGAAGAGATTGCAATGTGGAAACGTCACTGGCCTTGCTCCATCTTGGA 1138
|||||| ||||||||||| || | ||||||||| |||| ||||| | ||||||||||||
Sbjct 1073 GCTAAAATGTAAAGAAGATATAGAAATGTGGAAGCGTCTTTGGCCATCCTCCATCTTGGA 1132
Query 1139 ATAG 1142
|||
Sbjct 1133 GTAG 1136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51160954614
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5