BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32580.1
Length=920
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482183 jgi|Araly1|482183|fgenesh2_kg.4__1243__AT2G32580.1 1168 0.0
> Ahg482183 jgi|Araly1|482183|fgenesh2_kg.4__1243__AT2G32580.1
Length=787
Score = 1168 bits (632), Expect = 0.0
Identities = 745/797 (93%), Gaps = 17/797 (2%)
Strand=Plus/Plus
Query 48 TTCAGTTGAATCTCCACCGACACCA-TAATCTGAGTGCAAGAGTCCATACTCTCCATCAG 106
|||||||||||| |||||||||||| || | ||||||||||||| | | |||||
Sbjct 1 TTCAGTTGAATCACCACCGACACCATTATTTTGAGTGCAAGAGT-C--A------ATCAG 51
Query 107 AGAGACTCAAATCCAATTCTCCTTACTGCAACAGCTCAAATTTGGAATCTTTTGTAAAAA 166
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 52 AGAGACTCAAATCCAATTCTCATTACTGCAACAGCTCAAATTTGGAATCTTTTCTAAAAA 111
Query 167 CCCAGATCAGCGGATCTCGAATGGCGAAGCACACGGCAGCGTTGAAGGTGGGACTAGCTT 226
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 112 CCCAGATCACCGGATCTCGAATGGCGAAGCACACGGCGGCGTTGAAGGTGGGACTGGCTT 171
Query 227 TACTGGCCCTCAGCATGATTGGCTACATACTTGGTCCACCGCTCTACTGGCACCTCACGG 286
| ||||| || ||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 172 TGCTGGCGCTGAGCATGATTGGTTACATACTTGGTCCGCCGCTCTACTGGCACCTCACGG 231
Query 287 AAGCCTTAGCCGTTTCAGCCACTTCTTGCTCTGCTTGCGTCTGTGATTGCTCTTCGTTGC 346
| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 232 AGGCCTTAGCTGTTTCAGCTACTTCTTGCTCTGCTTGCGTCTGTGATTGCTCTTCGTCGC 291
Query 347 CTCTTCTCACCATCCCAACTGGACTCAGCAATGGTTCATTCACTGATTGTGCAAAGCGTG 406
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 292 CTCTTCTCACCATCCCAACTGGACTCAGCAATGTTTCATTCGCTGATTGTGCAAAGCGTG 351
Query 407 ATCCAGAGGTGAACGAAGACACAGAGAAGAACTACGCTGAACTTTTAACAGAGGAACTGA 466
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 352 ATCCAGAGGTGAACGAAGACACAGAGAAGAACTACGCCGAACTTTTAACAGAGGAACTGA 411
Query 467 AGCAGCGTGAAGCAGCATCGATGGAGAAACACAAACGAGTAGACACGGGTCTGCTAGAGG 526
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 412 AGCAGCGTGAAGCAGCATCGATGGAGAAACACAAACGAGTAGACACAGGTTTGCTAGAGG 471
Query 527 CCAAGAAGATAACATCATCTTACCAAAAGGAGGCAGATAAGTGTAACTCGGGTATGGAGA 586
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 472 CTAAGAAGATAACATCATCATACCAAAAGGAGGCAGATAAGTGTAACTCGGGTATGGAGA 531
Query 587 CTTGTGAAGAAGCAAGAGAGAAGGCGGAGAAAGCACTTGTGGAGCAGAAGAAGCTGACTT 646
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 532 CTTGTGAAGAAGCAAGAGAGAAGGCGGAAAAAGCACTTGTAGAGCAGAAGAAGCTGACTT 591
Query 647 CTATGTGGGAACAGAGAGCTCGTCAGAAAGGATACAAAGATGGAGCCACCAAGTCAACTG 706
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 592 CTATGTGGGAACAGAGAGCTCGTCAGAAAGGATACAGAGATGGAGCCACCAAGTCAACTG 651
Query 707 TTAAATCCAAAAGCGGCACTGAGGTTGCTTAAGGACACACCAAAGGTTTTGATTTCTTAT 766
|||||||||||||| || || |||||||||||| ||||||||||||||||| ||||||||
Sbjct 652 TTAAATCCAAAAGCAGCGCTCAGGTTGCTTAAGTACACACCAAAGGTTTTGCTTTCTTAT 711
Query 767 CACACGAAAGAAAAGTTTCA-GT---G--TATCTGTGAATTTGATTCATACTATTGTATT 820
||||||||||| | |||||| || | || ||||||||||||||||||||||||||||
Sbjct 712 CACACGAAAGATA-GTTTCATGTTACGCGTAACTGTGAATTTGATTCATACTATTGTATT 770
Query 821 TAAGTTTTCTGATGGAG 837
| |||||||||||||||
Sbjct 771 TTAGTTTTCTGATGGAG 787
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34120010715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5