BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32600.1
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482185 jgi|Araly1|482185|fgenesh2_kg.4__1245__AT2G32600.1 1727 0.0
> Ahg482185 jgi|Araly1|482185|fgenesh2_kg.4__1245__AT2G32600.1
Length=1123
Score = 1727 bits (935), Expect = 0.0
Identities = 1047/1099 (95%), Gaps = 15/1099 (1%)
Strand=Plus/Plus
Query 110 TAGCGTGAAAGGAGATC---CTAGT-AGCAGCTATGGATAGAGAATGGGGTTCCAAGCCT 165
||||||||||||||||| || | || ||||||||| |||||||||||||||||||||
Sbjct 30 TAGCGTGAAAGGAGATCGAAGTATTAAGAAGCTATGGACAGAGAATGGGGTTCCAAGCCT 89
Query 166 GGTAGTGGCGGCGCCGCCTCCGGCCAAAACGAGGCCATAGATCGCCGTGAGCGTCTCCGT 225
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 90 GGTAGTGGAGGCGCCGCCTCCGGCCAAAACGAGGCCATAGATCGCCGCGAGCGTCTCCGT 149
Query 226 CGTCTTGCTCTTGAAACCATAGACCTTGCTAAAGATCCGTATTTCATGCGAAATCATCTT 285
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 150 CGTCTTGCTCTTGAAACCATAGACCTTGCGAAAGATCCCTATTTCATGCGAAATCATCTT 209
Query 286 GGAAGCTATGAGTGTAAACTATGTCTAACACTGCATAACAATGAAGGAAACTACTTGGCA 345
|||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 210 GGAAGCTACGAGTGTAAACTATGTCTAACGCTGCATAACAACGAAGGAAACTACTTGGCA 269
Query 346 CATACTCAAGGTAAGAGGCATCAGACAAACTTGGCAAAGAGAGCTGCTCGAGAGGCTAAG 405
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 270 CATACTCAAGGTAAGAGGCATCAGACAAACTTGGCAAAGAGAGCTGCTCGAGAGGCCAAG 329
Query 406 GATGCTCCTACTAAGCCGCAGCCACTCAAGCGCAATGTCTCAGTTCGCAGAACAGTTAAA 465
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 GATGCTCCTACTAAGCCTCAGCCACTCAAGCGCAATGTCTCAGTTCGCAGAACAGTTAAA 389
Query 466 ATTGGTAGACCAGGGTACCGGGTTACAAAACAGTATGATCCCGAGCTGCAACAAAGATCT 525
||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 390 ATTGGTAGACCAGGGTACCGGGTAACAAAGCAGTACGATCCCGAGCTGCAACAAAGATCT 449
Query 526 CTTCTGTTCCAGATTGAATATCCTGAGATAGAGGACAACATAAAGCCAAGACATCGTTTC 585
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 450 CTTCTGTTCCAGATTGAATATCCTGAGATAGAAGACAACATAAAGCCAAGACATCGTTTC 509
Query 586 ATGTCATCTTATGAGCAGAAAGTTCAACCTTATGACAAGAGCTATCAATACCTTCTATTT 645
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 510 ATGTCATCTTATGAGCAGAAAGTTCAACCTTATGACAAGAGATATCAATACCTTCTATTT 569
Query 646 GCAGCCGAACCATATGAAATCATAGCTTTCAAGGTTCCTAGCACAGAGGTTGATAAATCA 705
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 GCAGCTGAACCATATGAAATCATAGCTTTCAAGGTTCCTAGCACAGAGGTTGATAAATCA 629
Query 706 ACCCCAAAGTTTTTCTCTCACTGGGATCCAGACTCCAAGATGTTTACACTGCAGGTGTAT 765
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 630 ACCCCAAAGTTTTTCTCTCACTGGGATCCAGACTCCAAGATGTTTACTCTGCAGGTGTAT 689
Query 766 TTCAAGCCTACCAAGCCAGAACCAAACAAGCCTCAGTCAGCTGTTGGAGCAAATGGTCTT 825
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 690 TTCAAGCCTACCAAGCCAGAACCAAACAAGCCTCAGTCCGCTGTTGGAGCAAATGGTCTT 749
Query 826 CCACCGCCACCACCACCCCCGCCTCATCAAGCTCAACCGCCACCACCACCTCCATCTGGT 885
||||||||||||||||| ||||| | |||||||||||||||||||| ||||||||||||
Sbjct 750 CCACCGCCACCACCACCACCGCC--A-CAAGCTCAACCGCCACCACCTCCTCCATCTGGT 806
Query 886 TTATTCCCACCGCCACCACCTCCAATGGCTAACAATGGTTTTAGGCCCATGCCACCAGCT 945
||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 807 TTACTACCACCGCCACCACCTCCAATGGCAAACAATGGTTTTAGGCCCATGCCACCAGCT 866
Query 946 GGAGGTTTCGGACATCCTAACATGTGAAAGAGAATCCAGCGAAGCAGTTTAAAAACACAG 1005
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 867 GGAGGTTTCGGACATCCTAACATGTGAAAGAGAAACTAGCGAAGCAGTTTAAAAACACAG 926
Query 1006 TACTCTGATCATGGTTTACTAAGAGAGACT-TGCTCTTTGACTGAAAAA---CAAATCTG 1061
|||||| |||||| |||||||||||||| | |||||||||||||||||| ||||||||
Sbjct 927 TACTCTTATCATGATTTACTAAGAGAGAATGTGCTCTTTGACTGAAAAATATCAAATCTG 986
Query 1062 TTTTGACATGGATTCTCAAAGCTGTGATCTCTAC-GGATGTATTAGCTCTCTAGATACCT 1120
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 987 TTTTGACATGGATTCTCAAAGCTGTGATCTCTACAGG-TGTATTAGCTCTCTAGATACCT 1045
Query 1121 TCTTTGA-GTTTCTTCTATCTGCTTCTCGTATGTACCATTTTGACAAGATTGTTTTCCGT 1179
||| || |||||||||||||| |||||||||||||| |||||||| ||||| |||||||
Sbjct 1046 TCTA-GAAGTTTCTTCTATCTGTTTCTCGTATGTACCCTTTTGACAGGATTGGTTTCCGT 1104
Query 1180 TAATAGTACAATTAGCGTT 1198
||||||||||||||| |||
Sbjct 1105 TAATAGTACAATTAGAGTT 1123
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 48 AAATTTTCCAGCAATCGAGAGAGCAGCAC 76
|||||||||||||||||||||||||||||
Sbjct 1 AAATTTTCCAGCAATCGAGAGAGCAGCAC 29
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45023164977
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5