BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32630.1
Length=1875
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482187 jgi|Araly1|482187|fgenesh2_kg.4__1247__AT2G32630.1 2752 0.0
> Ahg482187 jgi|Araly1|482187|fgenesh2_kg.4__1247__AT2G32630.1
Length=1818
Score = 2752 bits (1490), Expect = 0.0
Identities = 1687/1782 (95%), Gaps = 13/1782 (1%)
Strand=Plus/Plus
Query 95 AAGCAGCCAGAAGAATCACGGCGTGCCTGGTGGAGAAATCCACCATCGGAAAACTTCAAT 154
||||||||||||||||||||||||||||||| | | ||||||||||| || |
Sbjct 49 AAGCAGCCAGAAGAATCACGGCGTGCCTGGT-G-G---------ATCGGAAAACTCCAGT 97
Query 155 CGAATCCATCACTCCTCTTCAATTTGAATTCAAATGTTACCCGTCTCGTTCTATCTGAGC 214
|||||||||| || |||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 98 CGAATCCATCTCTTCTCTTCAATTTGAATTCAAACGTAACCCGTCTCGTTCTATCTGACC 157
Query 215 CAACTCTTCCCACTCAATCCTGCATCGATTTCTTCAAGCTTCTTCGCGAATTCGAATCTA 274
|| ||||| |||||||||| |||||||||||||||||| |||| |||||||| ||||| |
Sbjct 158 CATCTCTTGCCACTCAATCGTGCATCGATTTCTTCAAGTTTCTCCGCGAATTTGAATCCA 217
Query 275 ATCTCAAACCTGATCTCACGGCGGTAGTGACTTTATCTCACCGGTTATATTCTAACCGGA 334
|||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 218 ATCTCAAACCCGATCTCACGGCAGTAGTAACTTTATCTCACCGGTTATATTCTAACCGGA 277
Query 335 GGTTCAATGAGATGAGATCGCTTCTGAATTCAGTTGTTAACGACGGGTTTTACAAGCGTC 394
|||||| ||||||||||| |||||||||||| ||||||||||||||||||||| |||| |
Sbjct 278 GGTTCAGTGAGATGAGATTGCTTCTGAATTCGGTTGTTAACGACGGGTTTTACGAGCGCC 337
Query 395 CGGTTGAGGAG-TTAGGATCAGCGATGGTGGATTGTGACATTTCTGAAGAAAAGTTTGAA 453
| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 CAGTTGA-GAGTTTAGGATCAGCGATGGTGGATTGTGACATTTCTGAAGAAAAGTTTGAA 396
Query 454 TTTTTCGAAAAGTTTTTCGATTTGGTATTTAGGGTGTATGTTGATAACGGAATGTTTGAA 513
|||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 397 TTTTGGGAAAAGTTTTTCGATTTGGTCTTTAGGGTTTATGTTGATAACGGAATGTTTGAA 456
Query 514 GAGGGTTTAAGGGTTTTTGATTACATGGTTAAAAAGGGATTGAGTATTGATGAAAGATCC 573
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 457 GAGGGTTTAAGGGTTTTCGATTACATGGTTAAAAAGGGATTGAGTATTGATGAAAGATCA 516
Query 574 TGCATTGTGTTTTTGGTTGCGGCGAAGAAGCGACGGAGAATTGATCTCTGTTTGGAAATT 633
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 517 TGCATTGTGTTTTTGGTTGCGGCGAAGAAACGCCGGAGAATTGATCTCTGTTTGGAAATT 576
Query 634 TTCCGGCGAATGGTTGATTCTGGAGTGAAGATAACTGTTTATTCATTGACGATTGTGGTT 693
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 577 TTCCGGCGAATGGTTGATTCTGGAGTGAAGATAACTGTCTATTCATTGACAATTGTGGTT 636
Query 694 GAAGGATTATGTAGAAGAGGTGAAGTTGAGAAGAGTAAGAAGCTGATTAAGGAGTTTTCT 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 GAAGGATTATGTAGAAGAGGTGAAGTTGAGAAGAGTAAGAAGCTGATTAAGGAGTTTTCT 696
Query 754 GTTAAAGGGATTAAACCTGAAGCTTATACTTACAACACTATTATCAATGCTTATGTTAAA 813
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 697 GGTAAAGGGATTAAACCTGAAGCTTATACTTACAACACTATTATCAATGCTTATCTTAAA 756
Query 814 CAGAGAGATTTCTCGGGTGTGGAAGGGGTTTTGAAGGTGATGAAGAAGGATGGTGTGGTG 873
|| ||||||||||| ||||| ||| | |||||||| |||||||||| ||||||||||||
Sbjct 757 CACAGAGATTTCTCTGGTGTAGAAAAGATTTTGAAGTTGATGAAGAAAGATGGTGTGGTG 816
Query 874 TATAACAAGGTTACGTATACGCTTTTGATGGAATTGAGTGTTAAGAATGGGAAAATGAGT 933
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 817 TATAATAAGGTTACGTATACGCTTTTGATAGAATTGAGTGTTAAGAATGGGAAAATGAAT 876
Query 934 GATGCGGAGAAGCTGTTCGATGAAATGCGTGAGAGAGGAATAGAATCTGATGTTCATGTG 993
|||| |||||||||||| |||| ||||||||||||||| |||||||||||| ||||||||
Sbjct 877 GATGTGGAGAAGCTGTTTGATGGAATGCGTGAGAGAGGGATAGAATCTGATATTCATGTG 936
Query 994 TATACTTCTTTGATAAGTTGGAATTGTAGAAAGGGAAATATGAAAAGAGCGTTTTTGTTG 1053
||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 937 TATACTTCTTTAATAAGTTGGCATTGTAGAAAGGGAAATATAAAAAGAGCGTTTTTGTTG 996
Query 1054 TTTGATGAATTGACAGAGAAGGGACTTTCGCCGAGTAGTTATACCTACGGGGCGCTTATT 1113
|||||||||||||| |||||||||||||||||||||||| |||| || ||||| |||||
Sbjct 997 TTTGATGAATTGACGGAGAAGGGACTTTCGCCGAGTAGTCATACTTATGGGGCACTTATC 1056
Query 1114 GACGGGGTGTGTAAGGTAGGGGAAATGGGTGCAGCTGAGATATTGATGAACGAGATGCAA 1173
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1057 GACGGGGTGTGTAAGGTAGGGGAAATGAGTGCAGCTGAGATATTGATGAACGAGATGCAA 1116
Query 1174 AGTAAAGGAGTTAATATCACTCAGGTGGTGTTTAATACGTTGATTGATGGGTATTGCAGG 1233
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1117 AGTAAAGGAGTTAATATCACTCAGGTGGTGTTTAATACGTTGATTAATGGGTATTGCAGG 1176
Query 1234 AAAGGGATGGTTGATGAAGCATCAATGATTTATGATGTGATGGAGCAGAAAGGGTTTCAA 1293
||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1177 AAAGGGATGATTGATGAAGCGTCAATGATTTATGATGTGATGGAGAAGAAAGGGTTTCAA 1236
Query 1294 GCTGATGTTTTCACTTGTAATACGATTGCTAGCTGTTTCAATAGATTGAAAAGGTATGAT 1353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1237 GCTGATGTTTTCACTTGTAATACGATTGCTAGCTGTTTCAATAGATTGAAAAGGTATGAT 1296
Query 1354 GAGGCAAAACAATGGCTGTTCAGGATGATGGAGGGTGGTGTGAAGCTTAGCACGGTTAGT 1413
|||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1297 GAGGCAAAGCAATGGCTGTTTAGGATGATGGAGGGTGGAGTGAAGCTTAGCACGGTTAGT 1356
Query 1414 TATACTAATTTGATCGATGTTTACTGCAAAGAAGGGAACGTTGAAGAGGCAAAGAGGCTA 1473
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1357 TATACTAATTTGATCGATGTTTACTGCAAAGAAGGGAACGTTGAGGAGGCAAAGAGGCTA 1416
Query 1474 TTTGTGGAGATGAGCAGCAAGGGAGTACAGCCCAACGCTATCACGTACAATGTGATGATC 1533
||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1417 TTTGTAGAGATGAGCAGCAAGGAAGTACAGCCCAACGCTATCACCTACAATGTGATGATT 1476
Query 1534 TACGCTTACTGCAAGCAAGGGAAAATAAAAGAAGCACGTAAACTAAGGGCCAACATGGAA 1593
|| || |||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1477 TATGCGTACTGCAAGCAAGGGAAAGTAAAAGAAGCACGTAAACTATGGGCCAACATGGAA 1536
Query 1594 GCAAATGGGATGGATCCGGATTCATATACCTACACGTCGCTCATACACGGGGAATGTATT 1653
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1537 GCAAATGGGATGAATCCGGATTCATATACCTACACGTCACTCATACACGGGGAATGTATT 1596
Query 1654 GCTGATAATGTGGATGAAGCAATGAGGCTCTTTAGCGAGATGGGGTTGAAGGGTTTGGAC 1713
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1597 GCTGATAACGTGGATGAAGCAATGAGGCTCTTTAGCGAGATGGGGTTGAAGGGTTTGGAC 1656
Query 1714 CAGAATTCTGTTACGTACACGGTGATGATCTCGGGTTTGTCCAAAGCTGGAAAATCAGAC 1773
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1657 CAGAATTCTGTTACATACACGGTGATGATCTCGGGTTTGTCCAAAGCTGGAAAATCAGAC 1716
Query 1774 GAAGCCTTTGGATTGTACGATGAGATGAAAAGGAAAGGGTATACAATAGATAATAAGGTT 1833
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1717 GAAGCCTTTGGATTGTACGATGAGATAAAAAGGAAAGGGTATACAATAGATAATAAGGTT 1776
Query 1834 TATACTGCACTCATTGGAAGTATGCATTCACCTGAGACTTAA 1875
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 TATACTGCACTCATTGGAAGTATGCATTCACCTGAGACTTAA 1818
Score = 67.6 bits (36), Expect = 3e-10
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 10 TCTTCTTCTTCTCGCAAACTCTCGCGACTCTTCAAC 45
||||||||||||||||||||||||||||||||||||
Sbjct 10 TCTTCTTCTTCTCGCAAACTCTCGCGACTCTTCAAC 45
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70428863005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5