BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32640.1
Length=2134
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482188 jgi|Araly1|482188|fgenesh2_kg.4__1248__AT2G32640.2 1757 0.0
> Ahg482188 jgi|Araly1|482188|fgenesh2_kg.4__1248__AT2G32640.2
Length=2075
Score = 1757 bits (951), Expect = 0.0
Identities = 1089/1152 (95%), Gaps = 23/1152 (2%)
Strand=Plus/Plus
Query 94 TTGTCATGGTGGTTCTGCAAATTCATCAGTTCAATGGGTTCGTTAGTTCCGTATCAAGGG 153
||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||
Sbjct 25 TTGTCATGGTGGTTCTGCAAATTCAACAATTCAATGGGTTCGTTAATTCCGTATCAAGGG 84
Query 154 CTCAGACAAACCAAGGAAGAAGGAGAGCTTCGACGACAGTGTGCGTTCAAACACAATTGG 213
||| |||||||| |||||||||||||||||||| |||||| |||||| || ||
Sbjct 85 CTCGGACAAACCGAGGAAGAAGGAGAGCTTCGAAGACAGTATGCGTT----CA-AA---- 135
Query 214 CTCCCTCTCTTACACAGAAGATAATGGAG-AGTATTTCAGTTGGTGGAGAAGCTGGAGGT 272
| ||| | |||||||||||| || |||||||||||||||||||||||||||
Sbjct 136 --------C--ACA-A-AAGATAATGGAGAAG-ATTTCAGTTGGTGGAGAAGCTGGAGGT 182
Query 273 GCTGGTGGTGCTTACTCTTATAATGCCTTGAAGAGACTTGACAATATTTGGTCCAACATA 332
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 183 GCTGGTGGTGCTTATTCTTACAATGCCTTGAAGAGACTTGACAATATTTGGTCCAACATA 242
Query 333 TGTACTCAACCAACAGGACCACAAGAAACTCAGCAAATTGTTTCTAGGGTATCTGGTTTT 392
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 243 TGTACTCAACCGACAGGACCGCAAGAAACTCAGCAAATTGTTTCTAGGGTATCTGGTTTT 302
Query 393 TCTCAAGATTATAGTATGGGGAATAATCTCGTTGGAACCTTTGACATAGTGGTTTGTGGG 452
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 TCTCAAGATTATGGTATGGGGAATAATCTCGTTGGAACCTTTGACATAGTGGTTTGTGGG 362
Query 453 GGTACTTTGGGGATTTTTCTAGCCACGGCTCTATGTGCCAAGGGTTTAAGAGTCGCTGTG 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 GGTACTTTGGGGATTTTTCTAGCCACGGCTCTATGTGCCAAGGGTTTAAGAGTCGCTGTG 422
Query 513 GTGGAGAGAAATGCAATCAAAGGGAGAGATCAAGAATGGAATATCTCAAGAAAAGAGATG 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 GTGGAGAGAAATGCAATCAAAGGGAGAGATCAAGAATGGAATATCTCAAGAAAAGAGATG 482
Query 573 AAAGAACTGACTGAAGTCAGAGTTTTAACCGAAGATGAGATCGAAGAAGTAATTGCTGCA 632
||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 483 AAAGAGCTGATTGAAGTCGGAGTTTTAACCGAAGATGAGATCGAAGAAGTAATTGCAGCA 542
Query 633 AAGTTCAATCCGAACAGATGTGGATTTGAGAATCTTGGTGATATATGGGTTGAAGATATT 692
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 543 AAGTTTAATCCGAACAGATGTGGGTTTGAGAATCTTGGTGATATATGGGTTGAAGATATT 602
Query 693 CTTAACCTCGGCGTTTCCCCAGCCAAACTTGTGGAAACTGTAAAACAACGTTTCATTTCT 752
|| |||||||||||||||||||| ||||||||||||||||| |||| |||||| |||||
Sbjct 603 CTGAACCTCGGCGTTTCCCCAGCTAAACTTGTGGAAACTGTGAAACGACGTTTTGTTTCT 662
Query 753 CTTGGTGGAGTCATTTTAGAAGACTCCAGCCTCTCGAGCATCGTCATCTACAATGATTTA 812
|||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 663 CTTGGTGGAGTCATATTAGAAGACTGCAGCCTCTCGAGCATCGTCATCTACGATGATTTA 722
Query 813 GCTGTTATGCAACTTTCTAAAGGTGACACATTATCTTCCCGTCTCGTTATTGATGCCATG 872
|||||||||||||||||||||||||||||||||||||||||||| || || ||||| |||
Sbjct 723 GCTGTTATGCAACTTTCTAAAGGTGACACATTATCTTCCCGTCTGGTCATCGATGCAATG 782
Query 873 GGAAACTTTTCTCCTATTCTGAAGCAGATCAAACGTGGTAGAAAGCCAGATGGAATGTGC 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 GGAAACTTTTCTCCTATTCTGAAGCAGATCAAACGTGGTAGAAAGCCAGATGGAATGTGC 842
Query 933 CTTGTTGTTGGATCTTGTGCTCATGGGTTTAAAGAGAACTCATCAAGCGACGTTATATAT 992
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 843 CTTGTTGTTGGATCTTGTGCTCATGGGTTTAAGGAGAACTCATCAAGCGACGTTATATAT 902
Query 993 AGCAGTTCATCGGTGACCAGAGTTGCAGATTCCAATGTACAACTCTTTTGGGAGGCTTTC 1052
|| |||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||
Sbjct 903 AGTAGTTCATCGGTGACCAAAGTTGCAGATTCTAATGTACAACTCTTTTGGGAGGCCTTC 962
Query 1053 CCGGCTGGCTCTGGTCCATTAGACCGCACTACTTACATGTTCACTTACACTGAACCGCAA 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CCGGCTGGCTCTGGTCCATTAGACCGCACTACTTACATGTTCACTTACACTGAACCGCAA 1022
Query 1113 TCAACATCTCCGAGTTTAGAGGATTTACTCGAAGAATACTGGAAACTGATGCCAAAATAC 1172
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1023 TCAACATCTCCGAGTTTAGAGGATTTACTCGAAGAATACTGGAAATTAATGCCAAAATAC 1082
Query 1173 CAAGGAGTCTCTCTTGATGAATTGGAAATACTGAGAGTTGTATACGGAATCTTTCCTACA 1232
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 CAAGGAGTCTCTCTTGATGAATTGGAAATACTGAGAGTTGTATACGGAATCTTTCCTACT 1142
Query 1233 TACCGAAATAGT 1244
||||| ||||||
Sbjct 1143 TACCGGAATAGT 1154
Score = 1192 bits (645), Expect = 0.0
Identities = 786/851 (92%), Gaps = 21/851 (2%)
Strand=Plus/Plus
Query 1242 AGTCCGTTGCCAGCTGCATTTGATCGTGTTCTACAGTTTGGTGATGCTAGCGGTATTCAA 1301
||||| |||| ||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1241 AGTCCATTGCAAGCAGCATTTGATCGTGTTCTACAGTTTGGTGATGCTAGCGGCATTCAG 1300
Query 1302 TCACCTGTTTCATTTGGGGGTTTTGGAAGTTTGACCAGACACCTTGGAAGATTGTCCAAT 1361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1301 TCACCTGTTTCATTTGGGGGTTTTGGAAGTTTGACCAGACACCTTGGAAGATTGTCCAAT 1360
Query 1362 GGAATCTATGACGCAATAGATGGAGATCTTCTGGACTCTGACAGCTTATCAAAGCTAAAT 1421
||||||||||| |||||| | || ||| |||||||| |||||||||||||||||||||||
Sbjct 1361 GGAATCTATGAAGCAATAAACGGGGATTTTCTGGACACTGACAGCTTATCAAAGCTAAAT 1420
Query 1422 CCTTATATGCCAAACTTGAGCGCATCATGGCTGTTTCAAAGAGCAATGTCTGCAAAGCAA 1481
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1421 CCTTATATGCCAAACTTGAGTGCATCATGGTTGTTTCAAAGAGCAATGTCTGCAAAGCAA 1480
Query 1482 CAGCTCGATGTTTCCCGTGGCTTCACCAATGAGCTTCTCCATGTAAATTTCAGTTGCATG 1541
|| ||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1481 CAACTCGATGTTTCCCCTGGCTTCACCAACGAGCTTCTCCATGTGAATTTCAGTTGCATG 1540
Query 1542 CAGAGATTGGGCGATCCAGTTCTCAGACCATTTCTTCAGGATATAATACAGTTTGGTCCT 1601
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1541 CAGAGATTGGGCGATCCAGTTCTCAGACCATTTCTTCAGGATATAATTCAGTTTGGTCCT 1600
Query 1602 CTAGCAAAGACATTAGGCCTTGTCATGCTGACCAAACCTCAGATAATTCCGTCAATATTC 1661
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1601 CTAGCGAAGACATTAGGCCTTGTCATGCTGACCAAACCTCAGATAATTCCGTCAATATTC 1660
Query 1662 AGACAGGTTGGGATACCTGTTCTGCTTGATTGGTCTGTTCATTTTTTCATGCTGGGCTTG 1721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1661 AGACAGGTTGGGATACCTGTTCTGCTTGATTGGTCTGTTCATTTTTTCATGCTGGGCTTG 1720
Query 1722 TATACGCTCCTCTCGGCATACATCGATCCATTGCTAAGGCCGTCTTTGGAAGGACTTCCC 1781
|||||| |||||||||||||||| ||||||||||| ||||||||||| |||||| || ||
Sbjct 1721 TATACGTTCCTCTCGGCATACATTGATCCATTGCTGAGGCCGTCTTTAGAAGGA-TTACC 1779
Query 1782 T-CAAAGACGAGGTTCGAGTGGAAGAGATGTCTCGAGGCCTGGAAATATGGAGCTGGCCT 1840
| ||||||||| |||||| |||| |||| |||||||||| ||||||||||||||||||||
Sbjct 1780 TTCAAAGACGAAGTTCGAATGGATGAGACGTCTCGAGGCTTGGAAATATGGAGCTGGCCT 1839
Query 1841 CGATTATGAGTTGTGATTCTGTTCGTATTTCTGAAGAATGGTACCCTCATCGTCACTGGC 1900
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1840 CGATTATGAGTTGTGATTCTGTTCGTATTTCTGAAGAATGATACCCTCATCATCACTGGC 1899
Query 1901 TTTTT-GAAAGAATAAAAGTTCATCAGATATCAACATC--TAGTACTTCATAAGCTTCAT 1957
|||| ||||| ||||||||||| || | |||| | || |||||||||| |||||||||
Sbjct 1900 TTTTGAGAAAGTATAAAAGTTCA-CA-ACATCATCGTCCATAGTACTTCACAAGCTTCAT 1957
Query 1958 AAATG-TCTGGCTCATATACACAGAATCAACATCTCAATCCTTAGATTTGATTCACAGGG 2016
||||| ||||||| ||||||||||||||||||| ||| ||||||||| || |
Sbjct 1958 AAATGGTCTGGCTTATATACACAGAATCAACATTTCAGTCCTTAGATCTG-------G-- 2008
Query 2017 TTCTAGAAAACTCCTTCAATATCAGTTTATACACACCTACATTCGAAAAGCTTTGTTCTA 2076
||||||||||||||||||||||| | |||||| | || ||||||||||||||||||||
Sbjct 2009 TTCTAGAAAACTCCTTCAATATCCGCTTATAC-C---TATATTCGAAAAGCTTTGTTCTA 2064
Query 2077 TGAACAGACAA 2087
|||||||||||
Sbjct 2065 TGAACAGACAA 2075
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80294236460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5