BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32645.1
Length=1376
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933836 jgi|Araly1|933836|scaffold_401824.1 765 0.0
Ahg482190 jgi|Araly1|482190|fgenesh2_kg.4__1250__AT2G32180.1 492 3e-138
Ahg933779 jgi|Araly1|933779|scaffold_401767.1 457 1e-127
> Ahg933836 jgi|Araly1|933836|scaffold_401824.1
Length=1102
Score = 765 bits (414), Expect = 0.0
Identities = 658/770 (85%), Gaps = 40/770 (5%)
Strand=Plus/Plus
Query 171 CGAGACTAAGAAAGACAAATCGAAAAAGAAGGAACCTAGGGTTAACTCAGGGCGGGTTAA 230
|||| ||||| || |||||||| ||||| |||||||||||||| ||||||||| |||||
Sbjct 188 CGAGGCTAAGGAATACAAATCGGAAAAGGAGGAACCTAGGGTTTACTCAGGGCAAGTTAA 247
Query 231 TATGCAGGAGTTGATGTACGAAGTTGTCGCAGAGTTGCCGCTTGACAGCCTCTTAGAACG 290
|||| ||||| |||||||||||| ||||| |||| || |||||| |||||||||||||
Sbjct 248 TATGGAGGAGGTGATGTACGAAGCTGTCGGAGAG-TG--GCTTGAGAGCCTCTTAGAACA 304
Query 291 TAGATCAATTAC-T---T----CC-GTACTAGAAAACCCTAATCCGGATTCACAGTCGTC 341
|||||||||||| | | || |||||| |||||||||||||||||||| | || ||
Sbjct 305 TAGATCAATTACTTCCGTGAAACCAGTACTACAAAACCCTAATCCGGATTCAGAATCTTC 364
Query 342 TATGTCATCTTGTGTCAGTCAGTCCAAGAAAAAACGTTGTTCTGTTAAGGTGGAAGAGAG 401
|||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||
Sbjct 365 TATGTCATCTTGTGTCCGTCAGTCCAAGAAAAAACGTTGTTCCATTAACGTGGAAGAGAG 424
Query 402 ACGTCCCAAGAAAGGCAAAGTCGTTAGTCCTTTAGAGGTGCAACCAAATTCAAACGACTC 461
| ||| ||||||| ||||| ||||||||||||||||||| |||| |||||||||||||
Sbjct 425 AAGTCGCAAGAAAAGCAAAACCGTTAGTCCTTTAGAGGTGGAACC-TATTCAAACGACTC 483
Query 462 CACCC-GATTGGCTTTTGAACGTTATGA-G-GA-ACGAGAATGGCTACAATCCGAAGCTG 517
| ||| ||||||||||||||||| |||| | || | ||||| ||||||||||| ||||||
Sbjct 484 C-CCCGGATTGGCTTTTGAACGTGATGAGGAGAGAAGAGAACGGCTACAATCCAAAGCTG 542
Query 518 ATCTCAACGAGGGAATTGTTTAAGTCTGATCTCGATAAAGGTAAAGCACGTCTC-CAAGT 576
|||||||||||| || ||| ||| ||||||||| || | ||||||| ||| | |||
Sbjct 543 ATCTCAACGAGGCAACTGTATAACACTGATCTCGCCGAACTTCAAGCACGCCTCTC-AGT 601
Query 577 CCCTTTTAACCAAGTGAAAACTCCGGACTTTTTGACAGAGGACGAGACAAGAATCA-TAC 635
|||||||| |||||||||||||||||||||||||||||||| |||||||||| | |||
Sbjct 602 CCCTTTTAGGCAAGTGAAAACTCCGGACTTTTTGACAGAGGATGAGACAAGAA-AATTAC 660
Query 636 ATGA-AAATGCCATGAAGATTCGTGACGATGGTGTGCCTGTGAATTTGGTGGATCCTCGG 694
|| | |||||| |||||| || || | | |||||| |||| ||||||||||||||
Sbjct 661 AT-AGAAATGCGATGAAGCTTTGTCCCCACGGTGTGAGTGTGGATTTGGTGGATCCT--A 717
Query 695 AT--GAATAAGCATGCGCTTGAGTTGAGGAAGTGGAAGATGAAG-GGAAACTGGAATTAT 751
|| ||| ||||||| |||||| |||||||||||||||||| || |||||||||||||||
Sbjct 718 ATCGGAAGAAGCATGAGCTTGAATTGAGGAAGTGGAAGATG-AGTGGAAACTGGAATTAT 776
Query 752 GTCTTTGTTAAAGGTTGGAACGATGTGCTTGATGCTAACAAGTCGAATTCGTTTAAGGAA 811
|||||||||||||||||||| |||||||||||||||| | | | || | ||||||
Sbjct 777 GTCTTTGTTAAAGGTTGGAAAAATGTGCTTGATGCTAATA-G-C---TT--T--AAGGAA 827
Query 812 AAAGACGTCTTTCCTCTCTGGTCTTTCCGATCTGGAACAGGCAAACTCTGTTTTGCTCTC 871
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 828 AAAGACGTCTATCCTCTCTGGTCTTTCCGATCTGGAACAGGAAAACTCTGTTTTGCTCTC 887
Query 872 ACCCC-AAAAATTCCAGCAACGGCTCTACTTCAGGAGAATCTGGCAGTGG 920
| ||| |||||||||||||| ||||||||||| |||||||||||| ||||
Sbjct 888 ATCCCTAAAAATTCCAGCAAAGGCTCTACTTCGGGAGAATCTGGCCGTGG 937
> Ahg482190 jgi|Araly1|482190|fgenesh2_kg.4__1250__AT2G32180.1
Length=597
Score = 492 bits (266), Expect = 3e-138
Identities = 364/406 (90%), Gaps = 28/406 (7%)
Strand=Plus/Minus
Query 968 AGAGAACTTGTTTTCTTATATTATCACAAAAAGATCCATCAGGCTACAACAACACACAAC 1027
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AGAGAACTTGTTTTCTTATATTATCACAAAAAGATCCATCAGGCTACAACAACACACAA- 539
Query 1028 AAGTGTAAAGTTTCTTGGCTCTACTAAAAACTCAAAAGTCTAAGTTGGATCAATCATCAC 1087
||||||||||||||||||||| | |||| || | | || | ||
Sbjct 538 --GTGTAAAGTTTCTTGGCTCTA--A-----TCAA---TC-A--T-----CA--C--CA- 504
Query 1088 CATAGGCCTTGAAACAATACCGCTCAATATAAGGAGCGTTAAAGAAAAGATCAGCTTCCA 1147
|||||||||||||||||||| ||| || ||||| |||||||||||||| |||||||
Sbjct 503 --TAGGCCTTGAAACAATACCGTTCACGGTACGGAGCATTAAAGAAAAGATCCGCTTCCA 446
Query 1148 ACCATTTCGGATACCGAACAAGATCTCCAGCTAAAAACTGCATATACCTCTTGCTTCCTT 1207
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 ACCATTTTGGATACCGAACAAGATCTCCAGCTAAAAACTGCATATACCTCTTGCTTCCTT 386
Query 1208 CGGGAACTACTCGAACCTCTCCTTGTTCAATGTAAACCAACTGATCCACCTGCCAATCCC 1267
| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 385 CAGGAACAACTCGAACCTCTCCTTCTTCAATGTAAACCAACTGATCCACCTGCCAATCCC 326
Query 1268 ATGGCAATTTGCATTTCCCTGTCTTCCAAACTGACCATCTCGAAACCCCGAGTTCCTCCA 1327
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 ATGGCAATTTGCACTTGCCTGTCTTCCAAACTGACCATCTCGAAACCCCGAGTTCCTCCA 266
Query 1328 ACCGTTTCTGTGAAACTTTCCGTTCCACTTTAACATTGTATAGCTC 1373
||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 265 ACCGTTTCTGTGAAACTTTCCTTTCCACTTTAACATTGTATAGCTC 220
> Ahg933779 jgi|Araly1|933779|scaffold_401767.1
Length=1048
Score = 457 bits (247), Expect = 1e-127
Identities = 464/562 (83%), Gaps = 41/562 (7%)
Strand=Plus/Plus
Query 307 GTACTAGAAAACCCTAATCCGGATTCACAGTCGTCT-ATGTCATCTT--G-T-GTCAGTC 361
|||||| |||||||||||| || || | |||| ||| | || |||| | | ||| |||
Sbjct 342 GTACTACAAAACCCTAATCTGGGTTTAGAGTCTTCTCCT-TCTTCTTACGTTAGTC-GTC 399
Query 362 AG-TCCAAGAAAAAACGTTGTTCTGTTAAGGTGGAAGAGAGACGTCCCAAGAAAGGCAAA 420
| |||||| |||||| || | |||| |||||| ||||| ||| |||||| |||||
Sbjct 400 -GTTCCAAGGAAAAAC---GTCCCATTAACGTGGAAAAGAGAAGTCGAAAGAAACGCAAA 455
Query 421 GTCGTTAGTCCTTTAGAGGTGCAACCAAATTCAAACGACTCCACCCGATTGGCTTTTGAA 480
||||||||||||||||||||| |||| ||||||||| |||||| | || |||||||||||
Sbjct 456 GTCGTTAGTCCTTTAGAGGTGGAACC-AATTCAAACAACTCCATCGGAGTGGCTTTTGAA 514
Query 481 CGTTATGA-G-GA-ACGAGAATGGCTACAATCCGAAGCTGATCTCAACGAGGGAATTGTT 537
||| |||| | || | ||||| |||||||||||||||||||||||||||||| || | ||
Sbjct 515 CGTGATGAGGAGAGAAGAGAACGGCTACAATCCGAAGCTGATCTCAACGAGGCAACTCTT 574
Query 538 TAAGTCTGATCTCGATAA-AGGTAAAGCACGTCTC-CAAGT-CCCTTTTAACCAAGTGA- 593
| || |||||||| | || | ||||||||||| | ||| ||| ||||| || || |
Sbjct 575 TCAGACTGATCTC-AGAACACACCAAGCACGTCTCTC-AGTACCC-TTTAAGCAGGTTAT 631
Query 594 AAACTCCGGACTTTTTGACAGAGGACGAGACAAGAATCATACATGAAAATGCCATGAAGA 653
|| ||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||
Sbjct 632 CAA-TCCGGACTTTTTGACAGAGAATGAGACAAGAATCATAAATGAAAATGCCATGAAGA 690
Query 654 TTCGTGACGATGGTGTGCCTGTGAATTTGGTGGATCCTCGGAT-G-AATAAGCATGCGCT 711
||||||||||||||||| |||| |||||||||||||| || | || ||||||| |||
Sbjct 691 TTCGTGACGATGGTGTGAGTGTGGATTTGGTGGATCCTA--ATCGGAAGAAGCATGAGCT 748
Query 712 TGAGTTGAGGAAGTGGAAGATGAAG-GGAAACTGGAATTATGTCTTTGTTAAAGGTTGGA 770
||||||||||||||||||||||| | ||||||||| ||||| |||||||||||||||||
Sbjct 749 TGAGTTGAGGAAGTGGAAGATGA-GTGGAAACTGGTATTATAACTTTGTTAAAGGTTGGA 807
Query 771 ACGATGTGCTTGATGCTAACAAGTCGAATTCGTTTAAGGAAA-AAGACGTCTTTCCTCTC 829
| |||||||||||||||| | | | || | ||| ||| ||||||||| ||||||
Sbjct 808 AAAATGTGCTTGATGCTAATA-G-C---TT--T--AAG-AAAGAAGACGTCTACCCTCTC 857
Query 830 TGGTCTTTCCGATCTGGAACAG 851
||||||||||||||||||||||
Sbjct 858 TGGTCTTTCCGATCTGGAACAG 879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51504060867
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5