BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32650.1
Length=636
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482190 jgi|Araly1|482190|fgenesh2_kg.4__1250__AT2G32180.1 688 0.0
> Ahg482190 jgi|Araly1|482190|fgenesh2_kg.4__1250__AT2G32180.1
Length=597
Score = 688 bits (372), Expect = 0.0
Identities = 515/577 (89%), Gaps = 37/577 (6%)
Strand=Plus/Plus
Query 57 CTCACTCACACTTCCG--CTGGTTTCACAAGATTGGATAGAAGCAGCCATGGCAAGTCTG 114
|||||||||| ||||| ||||||||||||| | | | ||||||||||||||||||
Sbjct 56 CTCACTCACAGTTCCGATATGGTTTCACAAGA-T---T-G--GCAGCCATGGCAAGTCTG 108
Query 115 ATAATGACTACACCATTCCCAGGTTCTGTCACTGCATGTAAGAAGACAAATAACCTGTCT 174
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 109 ATAATGACCACACCATTCCCAGGTTCTGTCACTACATGTAAGAAGACAAATAACCTGTCT 168
Query 175 GTTCAGAGAGCCTTTAAGGTGACTTGTATGCAGACAGAGAAACCATTAGAGGAGCTATAC 234
||||||||||| |||| |||||| ||||||||||| |||||||| || || |||||||||
Sbjct 169 GTTCAGAGAGCTTTTAGGGTGACATGTATGCAGACTGAGAAACCCTTGGAAGAGCTATAC 228
Query 235 AATGTTAAAGTGGAACGGAAAGTTTCACAGAAACGGTTGGAGGAACTCGGGGTTTCGAGA 294
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 AATGTTAAAGTGGAAAGGAAAGTTTCACAGAAACGGTTGGAGGAACTCGGGGTTTCGAGA 288
Query 295 TGGTCAGTTTGGAAGACAGGGAAATGCAAATTGCCATGGGATTGGCAGGTGGATCAGTTG 354
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 289 TGGTCAGTTTGGAAGACAGGCAAGTGCAAATTGCCATGGGATTGGCAGGTGGATCAGTTG 348
Query 355 GTTTACATTGAACAAGGAGAGGTTCGAGTAGTTCCCGAAGGAAGCAAGAGGTATATGCAG 414
|||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 349 GTTTACATTGAAGAAGGAGAGGTTCGAGTTGTTCCTGAAGGAAGCAAGAGGTATATGCAG 408
Query 415 TTTTTAGCTGGAGATCTTGTTCGGTATCCGAAATGGTTGGAAGCTGATCTTTTCTTTAAC 474
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 409 TTTTTAGCTGGAGATCTTGTTCGGTATCCAAAATGGTTGGAAGCGGATCTTTTCTTTAAT 468
Query 475 GCTCCTTATATTGAGCGGTATTGTTTCAAGGCCTATGGTGATGATTGATCCAACTTAGAC 534
||||| || ||| |||||||||||||||||||| || | || | | ||
Sbjct 469 GCTCCGTACCGTGAACGGTATTGTTTCAAGGCCTA---TG--G--TG-----A--T-GA- 512
Query 535 TTTTGAGTTTTTAGTAGAGCCAAGAAACTTTACACTTGTTGTGTGTTGTTGTAGCCTGAT 594
|||| | ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 513 --TTGA-----T--TAGAGCCAAGAAACTTTACAC---TTGTGTGTTGTTGTAGCCTGAT 560
Query 595 GGATCTTTTTGTGATAATATAAGAAAACAAGTTCTCT 631
|||||||||||||||||||||||||||||||||||||
Sbjct 561 GGATCTTTTTGTGATAATATAAGAAAACAAGTTCTCT 597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23293102287
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5