BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32670.1
Length=1350
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482195 jgi|Araly1|482195|fgenesh2_kg.4__1255__AT2G32670.1 1216 0.0
Ahg919163 jgi|Araly1|919163|scaffold_100444.1 809 0.0
> Ahg482195 jgi|Araly1|482195|fgenesh2_kg.4__1255__AT2G32670.1
Length=1159
Score = 1216 bits (658), Expect = 0.0
Identities = 749/793 (94%), Gaps = 5/793 (1%)
Strand=Plus/Plus
Query 239 CTTCTTCGGGTCAC--GAG-AACAATGGGACAACAAAATTTGATCTACAGCTTCGTCGCT 295
|||||||||||||| || |||||||||||| |||||||||||||||||||||||||||
Sbjct 168 CTTCTTCGGGTCACATCAGAAACAATGGGACAGCAAAATTTGATCTACAGCTTCGTCGCT 227
Query 296 CGTGGTACGGTGATTCTCGTCGAGTATACAGAATTCAAAGGAAATTTCACTGCCGTCGCT 355
||||||||||||||||||| ||||||||||||||||||||| ||||||||| | ||||||
Sbjct 228 CGTGGTACGGTGATTCTCGCCGAGTATACAGAATTCAAAGGGAATTTCACTTCTGTCGCT 287
Query 356 GCACAGTGTCTCCA-AAAGCTTCCTTCTTCGAATAACAAGTTTACATACAATTGCGACGG 414
|| ||||||||||| ||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 288 GCTCAGTGTCTCCAGAAA-CTTCCTTCTTCGAATAACAAGTTTACATACAACTGCGATGG 346
Query 415 ACACACGTTCAATTACCTCGTCGAGAATGGCTTCACGTATTGTGTTGTTGCTGTTGAATC 474
|| ||||| |||||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct 347 TCATACGTTTAATTACCTCGTCGAAAATGGCTTTACTTATTGTGTTGTTGCTGTTGAATC 406
Query 475 TGTTGGGAGGCAGATTCCTATGGCTTTCTTGGAGAGAGTTAAGGAAGATTTCAACAAGAG 534
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 407 TGTTGGGAGGCAGATTCCAATGGCTTTCTTGGAGAGAGTTAAGGAGGATTTCAACAAGAG 466
Query 535 ATATGGTGGTGGTAAGGCTACCACTGCTCAAGCCAACAGCTTAAACAGAGAGTTTGGGTC 594
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 467 ATATGGTGGTGGAAAGGCTACCACTGCTCAAGCCAACAGCTTGAACAGAGAGTTTGGGTC 526
Query 595 GAAACTGAAGGAGCACATGCAGTACTGTGTGGATCATCCTGACGAGATTAGCAAACTTGC 654
|||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 527 GAAATTGAAGGAGCACATGCAGTACTGTGTGGATCACCCTGATGAGATTAGCAAACTTGC 586
Query 655 CAAAGTTAAGGCTCAGGTTACTGAGGTGAAGGGTGTTATGATGGAGAACATTGAGAAGGT 714
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 587 CAAAGTTAAGGCTCAGGTGACTGAGGTGAAGGGTGTTATGATGGAGAACATTGAGAAGGT 646
Query 715 CCTTGACCGTGGTGAGAAAATTGAGCTTCTAGTTGACAAAACTGAGAACCTTCGTTCACA 774
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 647 CCTTGACCGTGGTGAGAAAATTGAGCTTCTAGTTGATAAAACTGAGAACCTTCGTTCACA 706
Query 775 GGCACAAGATTTCAGAACACAAGGAACAAAAATAAGAAGAAAGATGTGGTTTGAAAACAT 834
|||||||||||||||| | |||||||| ||||| |||||||||||||||||||| |||||
Sbjct 707 GGCACAAGATTTCAGAGCGCAAGGAACGAAAATGAGAAGAAAGATGTGGTTTGACAACAT 766
Query 835 GAAGATTAAGCTCATAGTCCTCGGTATCATCATTACCTTGATTCTCATCATCATCCTCTC 894
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 GAAGATTAAACTCATAGTCCTCGGTATCATCATTACCTTGATTCTCATCATCATCCTCTC 826
Query 895 TGTTTGCGGGGGATTCAAGTGTACCTAAAACTTGAAAGAATAAGAAGAATACGTTGCGAG 954
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 827 GGTTTGCGGGGGATACAAGTGTACCTAAAACTTGAAAGAATCAGAAGAATACGTTGCGAG 886
Query 955 ATTACCAGCCCCATATTGCTCTACTAAGCTCATTGGAACTTCTCCCGGTATATGCCCTTC 1014
|||||||||||||||||||||||||||||| | ||||||||| || |||||||||| |||
Sbjct 887 ATTACCAGCCCCATATTGCTCTACTAAGCTGACTGGAACTTCGCCTGGTATATGCCATTC 946
Query 1015 TTTTTCTTCCTGT 1027
|||||||| ||||
Sbjct 947 TTTTTCTTTCTGT 959
Score = 158 bits (85), Expect = 1e-37
Identities = 143/168 (85%), Gaps = 15/168 (9%)
Strand=Plus/Plus
Query 9 AGAATTAAATAACGCAATTAATTTTTGaaaaaaaaaCGTTGATAGAAAGGAGAAAAATG- 67
||||||||||||||||||||| | ||||||||||| ||| | ||| | |||||||
Sbjct 1 AGAATTAAATAACGCAATTAAATGATGAAAAAAAAA--ATGA-A-AAA--AAAAAAATGA 54
Query 68 -GAT--C-GC-AGCGTCGTCCCTATATCTCTCGCTCCCTTTCAA-TTTCTCCTTGTATTT 121
|| | || ||||||||||||||||||||| |||||||| || |||| ||||||||||
Sbjct 55 TAATCGCAGCGAGCGTCGTCCCTATATCTCTCTCTCCCTTTGAATTTTC-CCTTGTATTT 113
Query 122 TGGATCTTTCTTACTTCCGTacacacaaacccaaacaaacaacaaaaa 169
|||||||||||||||||||||||| |||| |||||||||||| |||||
Sbjct 114 TGGATCTTTCTTACTTCCGTACACCCAAAGCCAAACAAACAA-AAAAA 160
> Ahg919163 jgi|Araly1|919163|scaffold_100444.1
Length=703
Score = 809 bits (438), Expect = 0.0
Identities = 599/677 (88%), Gaps = 10/677 (1%)
Strand=Plus/Plus
Query 255 GAACAATGGGACAACAAAATTTGATCTACAGCTTCGTCGCTCGTGGTACGGTGATTCTCG 314
||| ||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||
Sbjct 16 GAAGAATGGGACAACAATCGTTGATCTACAGCTTCGTCGCTCGCGGTACGGTGATCCTCG 75
Query 315 TCGAGTATACAGAATTCAAAGGAAATTTCACTG-CCGTCGCTGCACAGTGTCTCCA-AAA 372
||||||||| |||||||| || ||||| || | |||||||||| ||||| ||||| |||
Sbjct 76 CCGAGTATACCGAATTCAAGGGCAATTTTAC-GTCCGTCGCTGCTCAGTGCCTCCAGAAA 134
Query 373 GCTTCCTTCTTCGAATAACAAGTTTACATACAATTGCGACGGACACACGTTCAATTACCT 432
||||| || ||||| ||||||||||| |||||||||||||| ||||| |||||||| ||
Sbjct 135 -CTTCCGTCATCGAACAACAAGTTTACCTACAATTGCGACGGTCACACTTTCAATTATCT 193
Query 433 CGTC-GAGAATGGCTTCACGTATTGTGTTGTTGCTGTTGAATCTGTTGGGAGGCAGATTC 491
|| | || ||||||||||| ||||||||||||| ||||||||||| |||||||||||| |
Sbjct 194 CG-CTGATAATGGCTTCACCTATTGTGTTGTTGTTGTTGAATCTGCTGGGAGGCAGATAC 252
Query 492 CTATGGCTTTCTTGGAGAGAGTTAAGGAAGATTTCAACAAGAGATATGGTGGTGGTAAGG 551
| |||||||||||||||||||| ||||| ||||||| ||||||||| |||||||| ||||
Sbjct 253 CAATGGCTTTCTTGGAGAGAGTCAAGGAGGATTTCAGCAAGAGATACGGTGGTGGAAAGG 312
Query 552 CTACCACTGCTCAAGCCAACAGCTTAAACAGAGAGTTTGGGTCGAAACTGAAGGAGCACA 611
|| |||||||| |||||||||||||||||| ||| || ||||| ||| ||||||||||||
Sbjct 313 CTTCCACTGCTAAAGCCAACAGCTTAAACAAAGAATTCGGGTCTAAATTGAAGGAGCACA 372
Query 612 TGCAGTACTGTGTGGATCATCCTGACGAGATTAGCAAACTTGCCAAAGTTAAGGCTCAGG 671
|||||||||||| |||||||||||| ||||||||||||||| |||| |||||||||||||
Sbjct 373 TGCAGTACTGTGCGGATCATCCTGAGGAGATTAGCAAACTTTCCAAGGTTAAGGCTCAGG 432
Query 672 TTACTGAGGTGAAGGGTGTTATGATGGAGAACATTGAGAAGGTCCTTGACCGTGGTGAGA 731
| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 433 TGACTGAAGTGAAGGGTGTTATGATGGAGAATATTGAGAAGGTCCTTGACCGTGGTGAGA 492
Query 732 AAATTGAGCT-TCTAGTTGACAAAACTGAGAACCTTCGTTCACAGGCACAAGATTTCAGA 790
|||| ||||| | |||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 493 AAATCGAGCTAT-TAGTAGACAAAACTGAGAACCTTCGCTCACAGGCACAAGATTTTAGA 551
Query 791 ACACAAGGAACAAAAAT-AAGAAGAAAGATGTGGTTTGAAAACATGAAGATTAAGCTCAT 849
|||||||||||||| || || ||||||| |||||||||||||||||||||| ||||||||
Sbjct 552 ACACAAGGAACAAAGATGAA-AAGAAAGTTGTGGTTTGAAAACATGAAGATAAAGCTCAT 610
Query 850 AGTCCTCGGTATCATCATTACCTTGATTCTCATCATCATCCTCTCTGTTTGCGGGGGATT 909
|||| | || |||||| | | ||||||||||||||||| | || |||||| || ||
Sbjct 611 AGTCTTTGGCATCATCGTCGCTTTGATTCTCATCATCATTTTGTCGGTTTGCCATGGCTT 670
Query 910 CAAGTGTACCTAAAACT 926
||||||||| |||||||
Sbjct 671 CAAGTGTACTTAAAACT 687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50512865025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5