BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32710.1
Length=1411
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901082 jgi|Araly1|901082|Al_scaffold_0004_1732 1000 0.0
> Ahg901082 jgi|Araly1|901082|Al_scaffold_0004_1732
Length=837
Score = 1000 bits (541), Expect = 0.0
Identities = 739/826 (89%), Gaps = 47/826 (6%)
Strand=Plus/Plus
Query 130 ggaggtggaggtgAATCCTCTATTGCTTTAATGGATGTTGTTTCACCTTCTTC--C-TCT 186
||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||
Sbjct 34 GGAGGTGGAGGTGAATCCTCTATAGCTTTAATGGATGTTGTTTCACCTTCTTCTTCTTCT 93
Query 187 TCTTCACTTGGTGTTTTAACTCGAGCTAAATCTCTAGCTCT------TCAACAACAACAA 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 94 TCTTCACTTGGTGTTTTAACTCGAGCTAAATCTCTAGCTCTCCAACAACAACAACAACAA 153
Query 241 CAACGCTGTCTTCTTCAAAAACCCTCTTCTCCTTCTTCGTTACCACCGACTTCTGCTTCT 300
|||||| ||||||||| ||| ||||| | | |||| |||||||||||||||||| |||||
Sbjct 154 CAACGCCGTCTTCTTCCAAAGCCCTC-T-T-CTTCGTCGTTACCACCGACTTCTCCTTCT 210
Query 301 CCTAATCCACCGTC-AAAGCAGAAGATGAAGAAGAAGCAGCAGCAGATGAACGATTGTGG 359
|||||||||||||| ||| ||| | | ||| |||||| |||||||||| |||||||||||
Sbjct 211 CCTAATCCACCGTCGAAA-CAG-A-A-GAATAAGAAGAAGCAGCAGATTAACGATTGTGG 266
Query 360 TTCGTATCTTCAGCTACGGAGTCGTCGGCTTCAGAAGAAACCACCAATTGTTGTGATTCG 419
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 267 TTCGTATCTTCAGCTACGGAGTCGTCGTCTTCAGAAGAAACCTCCAATTGTTGTGATTCG 326
Query 420 TTCTACTAAACGGAGGAAACAGCAACGGAGGAATGAGACATGCGGAAGAAACCCTAACCC 479
||||||||||| | | | ||| || ||||||||||||| ||||||||||||
Sbjct 327 TTCTACTAAAC----G-----G--A-GGA--AA-GAGACATGCGGAACAAACCCTAACCC 371
Query 480 TAGGAGTAATTTGGATTCGA----T---TCG---TG-G-TGATGGGTCTAGGTCTGATTC 527
||| |||||||||||||| | ||| || | |||||||||||||||||||||
Sbjct 372 TAGTTCTAATTTGGATTCGATTCGTGGCTCGATTTGTGCTGATGGGTCTAGGTCTGATTC 431
Query 528 TGTTTCTGAAAGTGTTGTCTTTGGTAAAGACAAGGATTTGATTTCTGAAATCAATAAAGA 587
|||||||| |||||||||||||||||||| ||||| ||| ||| |||||||| |||||
Sbjct 432 GGTTTCTGAGAGTGTTGTCTTTGGTAAAGATAAGGAATTGGTTTGTGAAATCAGCAAAGA 491
Query 588 TCCAACCTTTGGCCAAAATTTCTTCGACCTT---GAAGAAGAACACACTCAAAGCTTCAA 644
||| ||||||| |||||||||||||| ||| |||||||||| |||||||||||||||
Sbjct 492 TCCTTCCTTTGGGCAAAATTTCTTCGAGCTTGAAGAAGAAGAACCCACTCAAAGCTTCAA 551
Query 645 CAGGACCACAAGGGAATCCACACCATGCAGTTTGATAAGAAGGCCTGAAATCATGACAAC 704
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 552 TAGGACCACAAGGGAATCCACACCATGCAGTTTGATAAGAAGGCCTGAAATCATCACAAC 611
Query 705 CCCGGGATCGTCTACAAAGCTTAACATTTGTGTAAGTGAAAGCAACCAGAGAGAAGACAG 764
||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||| ||
Sbjct 612 CCCGGGATCGTCTACAAAGCTTAACATCTGTGTAAGTGACAGCACCCAGAGAGAAGAGAG 671
Query 765 TTTGTCACGCAGCCATCGTCGCCGACCAACTACACCTGAAATGGACGAGTTTTTCTCGGG 824
|||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 672 TTTGTCTCGCAGCCATCGTCGCCTACCAACCACACCTGAAATGGACGAGTTTTTCTCGGG 731
Query 825 TGCTGAAGAAGAACAACAGAAGCAATTCATTGAGAAGTACAACTTTGATCCTGTGAACGA 884
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 732 GGCTGAAGAAGAACAACAGAAACAATTCATTGAGAAGTACAACTTTGATCCTGTGAACGA 791
Query 885 ACAACCACTACCAGGACGGTTTGAATGGACGAAGGTAGATGATTAG 930
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 ACAACCACTACCAGGACGGTTTGAATGGACGAAGGTAGATGATTAG 837
Score = 69.4 bits (37), Expect = 7e-11
Identities = 41/43 (95%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 61 ATGGGGAAATACATAAGAAAGAGCAAAATCGACggagctggag 103
|||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1 ATGGGGAAATACATAAGAAAGAGCAAAATCGATGGAGGTGGAG 43
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52754989325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5