BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32720.1
Length=728
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482208 jgi|Araly1|482208|fgenesh2_kg.4__1268__AT2G32720.1 1085 0.0
> Ahg482208 jgi|Araly1|482208|fgenesh2_kg.4__1268__AT2G32720.1
Length=700
Score = 1085 bits (587), Expect = 0.0
Identities = 667/705 (95%), Gaps = 8/705 (1%)
Strand=Plus/Plus
Query 4 CTCTTGTATAAAGTTTTGAGCTTTAAGTCTCAGAGTCAGGTTTTGGTGGGTTAATTCTGG 63
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 CTCTTGTATAAAGTTTTTAGCTTTAAATCTCAGAGTCAGGTTTTGGTGGGTTAATTCTGG 60
Query 64 TAGACAAGAATCAAACAAACAATGGGAGACGAAGCAAAGATCTTCACTCTTTCAGAAGTT 123
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TAGACAAGAAT----CAAACAATGGGAGACGAAGCAAAGATCTTCACTCTTTCAGAAGTT 116
Query 124 TCAGAGCATAATCAAGCTCATGACTGTTGGATTGTCATCAATGGAAAGGTGTACAATGTG 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 TCAGAGCATAATCAAGCTCATGACTGTTGGATTGTCATCAATGGAAAGGTGTACAATGTG 176
Query 184 ACCAAGTTTCTTGAAGACCATCCAGGTGGGGACGATGTTCTCTTGTCTTCAACAGGTAAG 243
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 177 ACCAAGTTTCTTGAAGACCATCCAGGTGGGGATGATGTTCTCTTGTCTTCAACAGGTAAG 236
Query 244 GATGCAACGGATGATTTTGAGGACGTGGGTCACAGCGAGAGTGCAAGAGAAATGATGGAG 303
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 237 GATGCAACCGATGATTTTGAGGACGTGGGTCATAGCGAGAGTGCAAGAGAAATGATGGAG 296
Query 304 CAGTACTACGTAGGAGAGATTGATCCAACAACAATACCAAAGAAAGTCAAATACACACCT 363
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 297 CAATACTACGTAGGAGAGATTGATCCGACAACAATACCAAAGAAAGTCAAATACGCACCT 356
Query 364 CCTAAACAGCCTCACTACAATCAAGACAAGACCTCTGAATTCATAATCAAGCTCCTCCAG 423
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 357 CCTAAACAGCCTCACTACAATCAAGACAAGACCTCTGAATTCATAATCAAGATCCTCCAA 416
Query 424 TTCCTCGTACCCCTTGCCATTCTTGGTTTAGCAGTCGGAATCCGTATCTACACCAAATCA 483
||||| |||||||||||||| || |||||||||||||| || || || ||||||||||||
Sbjct 417 TTCCTTGTACCCCTTGCCATACTCGGTTTAGCAGTCGGGATTCGCATTTACACCAAATCA 476
Query 484 GGGTAGGCTTCtt-tttttt-CTGAGCATTACTTCCTTATATCTTATATATAGAGAGAAA 541
||||||||||||| |||||| |||||||||||| || |||||||||||||||||||||||
Sbjct 477 GGGTAGGCTTCTTCTTTTTTTCTGAGCATTACTACCATATATCTTATATATAGAGAGAAA 536
Query 542 GATTCAAGTCTTTTGAAAAGACAAATCTGAAAGTCTCTCCCTTTGTTATTGTCTCTTCCC 601
|||| ||||||||||||||||||||||| |||||||||||||||||| | ||| |||||
Sbjct 537 GATTTAAGTCTTTTGAAAAGACAAATCTCAAAGTCTCTCCCTTTGTTCGTCTCTGTTCCC 596
Query 602 ATATTTTGCTGTTTGAATGTATTTTGGATAATTTCTTATCTATTGTGGTGTAACTGCATA 661
|||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 597 ATATTTTGTTGTTTGAATGTGTTTTGGACAATTTCTTATCTATTGTGGTGTAACTGCATA 656
Query 662 TAAACAACAGTCTTGTTGGTGTTTTTGCCTT-ATGCAACTAATGA 705
| ||||||||||||||||||| ||||||||| | |||||||||||
Sbjct 657 TGAACAACAGTCTTGTTGGTGGTTTTGCCTTGA-GCAACTAATGA 700
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26800410651
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5