BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G32750.1 Length=1530 Score E Sequences producing significant alignments: (Bits) Value Ahg933846 jgi|Araly1|933846|scaffold_401834.1 2211 0.0 > Ahg933846 jgi|Araly1|933846|scaffold_401834.1 Length=1561 Score = 2211 bits (1197), Expect = 0.0 Identities = 1420/1528 (93%), Gaps = 13/1528 (1%) Strand=Plus/Plus Query 1 ATGATGAAACCAGTTCCAAAGCTTTGGGTTGTCATCTCAAGTGCCTTTGTGTTCTGTCTT 60 |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 21 ATGATGAAACCAGTTCCAAAGCTTTGGGTTGTCATCTCAAGTGCGTTTTTGTTCTGTCTT 80 Query 61 TTAGTTCTGTTTCAAATCAATAAATCAGATTTGATC-GAAGCAAATCTCCAAATCACTCA 119 ||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||| Sbjct 81 TTAGTTCTGTTTCAAATCAATAAATTAGATTTGATCGGAA-CAAATCTCCAAATCACTCA 139 Query 120 TCAAGTTAACAACTTCCTCATCTCCTTCGTTGCTTCTTCAAATAATCAAATCCTAAATCA 179 ||| || ||||||||| |||||||| |||||| ||| ||| ||||||||| |||||||| Sbjct 140 TCACGTAAACAACTTCTTCATCTCCATCGTTGGTTCCTCACATAATCAAACCCTAAATCT 199 Query 180 CACCA-AACATGCGAATGAGAGTGATGGAATCAGAGCGAAACAGCTTGAGGAAGAAGAAA 238 ||||| || |||||||||||||||||||||||||||||||||| | |||| ||||||||| Sbjct 200 CACCAGAA-ATGCGAATGAGAGTGATGGAATCAGAGCGAAACATCCTGAGAAAGAAGAAA 258 Query 239 CGGATACTTGCGCCGGAAGATACATCTACATGTACAATCTTCCAAGCACATTCAACGACG 298 | ||||||||||| ||||| ||| |||| ||||||||||||||||||| ||||||||||| Sbjct 259 CAGATACTTGCGCTGGAAGGTACGTCTATATGTACAATCTTCCAAGCATATTCAACGACG 318 Query 299 ACATCATCAAAGAATGTCGTCCACTCATCAAATGGTTCGATATGTGTCCATTCATGGTCA 358 |||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 319 ACATAATCAAAGACTGTCGCCCACTCATCAAATGGTTCGATATGTGTCCATTCATGGTCA 378 Query 359 ATTCCGGGCTCGGTCCACAGATTTTGGTCTCCGATAAAACCACAGCTCGAGTCTTAACCG 418 |||||||||||||||||||| ||| || |||||||| |||||||||||||||||||||| Sbjct 379 ATTCCGGGCTCGGTCCACAGGTTTCGGAGTCCGATAACACCACAGCTCGAGTCTTAACCG 438 Query 419 TGAAAACCGGTTCTTGGTACTCAACGAACCAATTCTTGCTTTCGGTTATCTTCCGAGAGA 478 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 439 CGAAAACCGGTTCTTGGTACTCAACGAACCAATTCTTGCTGGCGGTTATCTTCCGAGAGA 498 Query 479 GGATGAAACACTACGAGTGTTTGACCAACAACTCTTCTCTAGCCTCAGCGATCTATGTCC 538 | |||||||| |||||||| || |||||| ||||||||||||||||||||| |||||||| Sbjct 499 GAATGAAACATTACGAGTGCTTAACCAACGACTCTTCTCTAGCCTCAGCGACCTATGTCC 558 Query 539 CATACTACGCAGGATTTGATGTGAGCCGTCACCTCTGGGGATACAACGTGACGGTTAGAG 598 ||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||| Sbjct 559 CATACTACGCAGGGTTTGATGTGAGCCGTCACCTCTGGGGATACAACATGACTGTTAGAG 618 Query 599 ACGAATTGGCGAT-AAAGCTGGCACAATGGCTGAGAGAGAGACCTGAATGGGGGAAGATG 657 ||||||||| ||| ||| ||||| |||||||| || ||||||||||||||| |||||||| Sbjct 619 ACGAATTGGGGATGAAA-CTGGCTCAATGGCTAAGTGAGAGACCTGAATGGAGGAAGATG 677 Query 658 TACGGCCGAGATCACTTCTTTGTGACCGGACGGATTGGTTGGGATTTCAGGAGGTTTCAC 717 ||||| ||||||||||||||||||||||||||||| | |||||| ||||||||| ||| | Sbjct 678 TACGGTCGAGATCACTTCTTTGTGACCGGACGGATCGCTTGGGACTTCAGGAGGGTTCGC 737 Query 718 GATGAAGATTCAGATTGGGGAAGCAAACTGATGCTATTACCTGAATTCTCGAATC-TGAC 776 |||||||||||||||||||||||||||||||||| |||||| |||||| | || | |||| Sbjct 738 GATGAAGATTCAGATTGGGGAAGCAAACTGATGCGATTACCCGAATTCGCAAA-CATGAC 796 Query 777 AATGTTAGGTATCGAAACGACTGCTTGGGCTAACGAATTTGCGATTCCTTATCCTACTTA 836 |||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 797 AATGTTAGCAATCGAAACGACTGCTTGGGCTAACGAATTTGCGGTTCCTTATCCGACTTA 856 Query 837 TTTCCATCCAAAGAGCTTAACAGAGATTTGGAGATGGCAGAAGAAAGTGAAGAGTGTGAA 896 ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct 857 TTTCCATCCAAAGAGCTTAACCGAGATTTGGAGATGGCAGAGGAAAGTGAAGAGTGTGAA 916 Query 897 GAGGAAGTATTTGTTTTCGTTTGTTGGAGGTCCAAGACCTAAATTGGATGGATCTATTAG 956 |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| || Sbjct 917 GAGGAAGTATTTGTTTTCGTTTGTTGGAGGTCCAAGACTTAAATTAGATGGATCTATAAG 976 Query 957 GGGAGAGATTATAAAGCAGTGCCTTGCATCTCACGGTAAATGCAACTTTCTTAACTGCTT 1016 ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 977 GGGAGAGATTATACAGCAGTGCCTTGCATCTCACGGTAAATGCAAATTTCTTAACTGTTT 1036 Query 1017 TGTTAATGACTGCGATAATCCGGTTAAGATAATGAAGGTGTTTGAAAATTCTGTCTTCTG 1076 |||||||||||||||||||||||||||||||||| ||||||||||||| || || ||||| Sbjct 1037 TGTTAATGACTGCGATAATCCGGTTAAGATAATGGAGGTGTTTGAAAAATCGGTTTTCTG 1096 Query 1077 TTTACAACCTTCGGGAGATTCGTACACTCGGAGATCGATATTCGATTCGATTCTGGCGGG 1136 |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| || Sbjct 1097 TTTACAACCTTCGGGAGATTCGTATACTCGGAGATCGATATTCGATTCGATTTTGGCCGG 1156 Query 1137 TTGTATACCGGTTTTCTTCAGCCCAGGTTCGGGTTACAACCAATATATTTGGTATTTTCC 1196 |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| || Sbjct 1157 TTGTATACCGGTTTTCTTCAGCCCGGGTTCGGGTTATAACCAATATATTTGGTATTTCCC 1216 Query 1197 AAAGGATTATACCAAGTACTCGGTTTACATACCAGAGAATGAAATGAGAAATGGAACGGT 1256 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1217 TAAGGATTATACCAAGTACTCGGTTTACATACCAGAGAAAGAAATGAGAAATGGAACGGT 1276 Query 1257 TAGTCTCAAGAATATTTTGGGTATGATCGCTAAGGAGAGGATTTTGAGGATGAGAAAAGA 1316 || ||||||||| |||||||||||||||| |||||||||||||||||||||||| || | Sbjct 1277 TACTCTCAAGAAGATTTTGGGTATGATCGATAAGGAGAGGATTTTGAGGATGAGGAATGT 1336 Query 1317 GGTTGTGAAGATTATACCAAAAATCATATATAATAAACCAGGGTT--T-GGACCGGAGAA 1373 ||||| |||||||||||| ||||||||||| | |||||| ||||| | ||||||||||| Sbjct 1337 GGTTGCGAAGATTATACCGAAAATCATATACACTAAACCGGGGTTGGTTGGACCGGAGAA 1396 Query 1374 GATTGAAGATGCGTTTGACATTGCAGTGGATAGGATGCTTGAGAGGGTAGCAATGGTTAA 1433 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1397 GATTGAAGATGCGTTTGACATTGCAGTGGATAGGATTCTTGAGAGGGTAGCAATGGTTAA 1456 Query 1434 GAGGATGATGGAAGAAGGGAAAGATGTTCAAAGTCAGTATTATTCACAGACAAAGGATTT 1493 ||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||| Sbjct 1457 GAGGATGATGGAAGAAGGGAAAGATATTCAGAGTGAGTATTATTCACAGACAAAGGATTT 1516 Query 1494 GAAAAAACTTGAGATTATACATGAAAAA 1521 ||||||||||||||||||| ||||||| Sbjct 1517 GAAAAAACTTGAGATTATA--TGAAAAA 1542 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57287728480 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5