BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32750.1
Length=1530
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933846 jgi|Araly1|933846|scaffold_401834.1 2211 0.0
> Ahg933846 jgi|Araly1|933846|scaffold_401834.1
Length=1561
Score = 2211 bits (1197), Expect = 0.0
Identities = 1420/1528 (93%), Gaps = 13/1528 (1%)
Strand=Plus/Plus
Query 1 ATGATGAAACCAGTTCCAAAGCTTTGGGTTGTCATCTCAAGTGCCTTTGTGTTCTGTCTT 60
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 21 ATGATGAAACCAGTTCCAAAGCTTTGGGTTGTCATCTCAAGTGCGTTTTTGTTCTGTCTT 80
Query 61 TTAGTTCTGTTTCAAATCAATAAATCAGATTTGATC-GAAGCAAATCTCCAAATCACTCA 119
||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||
Sbjct 81 TTAGTTCTGTTTCAAATCAATAAATTAGATTTGATCGGAA-CAAATCTCCAAATCACTCA 139
Query 120 TCAAGTTAACAACTTCCTCATCTCCTTCGTTGCTTCTTCAAATAATCAAATCCTAAATCA 179
||| || ||||||||| |||||||| |||||| ||| ||| ||||||||| ||||||||
Sbjct 140 TCACGTAAACAACTTCTTCATCTCCATCGTTGGTTCCTCACATAATCAAACCCTAAATCT 199
Query 180 CACCA-AACATGCGAATGAGAGTGATGGAATCAGAGCGAAACAGCTTGAGGAAGAAGAAA 238
||||| || |||||||||||||||||||||||||||||||||| | |||| |||||||||
Sbjct 200 CACCAGAA-ATGCGAATGAGAGTGATGGAATCAGAGCGAAACATCCTGAGAAAGAAGAAA 258
Query 239 CGGATACTTGCGCCGGAAGATACATCTACATGTACAATCTTCCAAGCACATTCAACGACG 298
| ||||||||||| ||||| ||| |||| ||||||||||||||||||| |||||||||||
Sbjct 259 CAGATACTTGCGCTGGAAGGTACGTCTATATGTACAATCTTCCAAGCATATTCAACGACG 318
Query 299 ACATCATCAAAGAATGTCGTCCACTCATCAAATGGTTCGATATGTGTCCATTCATGGTCA 358
|||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 319 ACATAATCAAAGACTGTCGCCCACTCATCAAATGGTTCGATATGTGTCCATTCATGGTCA 378
Query 359 ATTCCGGGCTCGGTCCACAGATTTTGGTCTCCGATAAAACCACAGCTCGAGTCTTAACCG 418
|||||||||||||||||||| ||| || |||||||| ||||||||||||||||||||||
Sbjct 379 ATTCCGGGCTCGGTCCACAGGTTTCGGAGTCCGATAACACCACAGCTCGAGTCTTAACCG 438
Query 419 TGAAAACCGGTTCTTGGTACTCAACGAACCAATTCTTGCTTTCGGTTATCTTCCGAGAGA 478
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 439 CGAAAACCGGTTCTTGGTACTCAACGAACCAATTCTTGCTGGCGGTTATCTTCCGAGAGA 498
Query 479 GGATGAAACACTACGAGTGTTTGACCAACAACTCTTCTCTAGCCTCAGCGATCTATGTCC 538
| |||||||| |||||||| || |||||| ||||||||||||||||||||| ||||||||
Sbjct 499 GAATGAAACATTACGAGTGCTTAACCAACGACTCTTCTCTAGCCTCAGCGACCTATGTCC 558
Query 539 CATACTACGCAGGATTTGATGTGAGCCGTCACCTCTGGGGATACAACGTGACGGTTAGAG 598
||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 559 CATACTACGCAGGGTTTGATGTGAGCCGTCACCTCTGGGGATACAACATGACTGTTAGAG 618
Query 599 ACGAATTGGCGAT-AAAGCTGGCACAATGGCTGAGAGAGAGACCTGAATGGGGGAAGATG 657
||||||||| ||| ||| ||||| |||||||| || ||||||||||||||| ||||||||
Sbjct 619 ACGAATTGGGGATGAAA-CTGGCTCAATGGCTAAGTGAGAGACCTGAATGGAGGAAGATG 677
Query 658 TACGGCCGAGATCACTTCTTTGTGACCGGACGGATTGGTTGGGATTTCAGGAGGTTTCAC 717
||||| ||||||||||||||||||||||||||||| | |||||| ||||||||| ||| |
Sbjct 678 TACGGTCGAGATCACTTCTTTGTGACCGGACGGATCGCTTGGGACTTCAGGAGGGTTCGC 737
Query 718 GATGAAGATTCAGATTGGGGAAGCAAACTGATGCTATTACCTGAATTCTCGAATC-TGAC 776
|||||||||||||||||||||||||||||||||| |||||| |||||| | || | ||||
Sbjct 738 GATGAAGATTCAGATTGGGGAAGCAAACTGATGCGATTACCCGAATTCGCAAA-CATGAC 796
Query 777 AATGTTAGGTATCGAAACGACTGCTTGGGCTAACGAATTTGCGATTCCTTATCCTACTTA 836
|||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 797 AATGTTAGCAATCGAAACGACTGCTTGGGCTAACGAATTTGCGGTTCCTTATCCGACTTA 856
Query 837 TTTCCATCCAAAGAGCTTAACAGAGATTTGGAGATGGCAGAAGAAAGTGAAGAGTGTGAA 896
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 857 TTTCCATCCAAAGAGCTTAACCGAGATTTGGAGATGGCAGAGGAAAGTGAAGAGTGTGAA 916
Query 897 GAGGAAGTATTTGTTTTCGTTTGTTGGAGGTCCAAGACCTAAATTGGATGGATCTATTAG 956
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||
Sbjct 917 GAGGAAGTATTTGTTTTCGTTTGTTGGAGGTCCAAGACTTAAATTAGATGGATCTATAAG 976
Query 957 GGGAGAGATTATAAAGCAGTGCCTTGCATCTCACGGTAAATGCAACTTTCTTAACTGCTT 1016
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 977 GGGAGAGATTATACAGCAGTGCCTTGCATCTCACGGTAAATGCAAATTTCTTAACTGTTT 1036
Query 1017 TGTTAATGACTGCGATAATCCGGTTAAGATAATGAAGGTGTTTGAAAATTCTGTCTTCTG 1076
|||||||||||||||||||||||||||||||||| ||||||||||||| || || |||||
Sbjct 1037 TGTTAATGACTGCGATAATCCGGTTAAGATAATGGAGGTGTTTGAAAAATCGGTTTTCTG 1096
Query 1077 TTTACAACCTTCGGGAGATTCGTACACTCGGAGATCGATATTCGATTCGATTCTGGCGGG 1136
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||
Sbjct 1097 TTTACAACCTTCGGGAGATTCGTATACTCGGAGATCGATATTCGATTCGATTTTGGCCGG 1156
Query 1137 TTGTATACCGGTTTTCTTCAGCCCAGGTTCGGGTTACAACCAATATATTTGGTATTTTCC 1196
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 1157 TTGTATACCGGTTTTCTTCAGCCCGGGTTCGGGTTATAACCAATATATTTGGTATTTCCC 1216
Query 1197 AAAGGATTATACCAAGTACTCGGTTTACATACCAGAGAATGAAATGAGAAATGGAACGGT 1256
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1217 TAAGGATTATACCAAGTACTCGGTTTACATACCAGAGAAAGAAATGAGAAATGGAACGGT 1276
Query 1257 TAGTCTCAAGAATATTTTGGGTATGATCGCTAAGGAGAGGATTTTGAGGATGAGAAAAGA 1316
|| ||||||||| |||||||||||||||| |||||||||||||||||||||||| || |
Sbjct 1277 TACTCTCAAGAAGATTTTGGGTATGATCGATAAGGAGAGGATTTTGAGGATGAGGAATGT 1336
Query 1317 GGTTGTGAAGATTATACCAAAAATCATATATAATAAACCAGGGTT--T-GGACCGGAGAA 1373
||||| |||||||||||| ||||||||||| | |||||| ||||| | |||||||||||
Sbjct 1337 GGTTGCGAAGATTATACCGAAAATCATATACACTAAACCGGGGTTGGTTGGACCGGAGAA 1396
Query 1374 GATTGAAGATGCGTTTGACATTGCAGTGGATAGGATGCTTGAGAGGGTAGCAATGGTTAA 1433
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1397 GATTGAAGATGCGTTTGACATTGCAGTGGATAGGATTCTTGAGAGGGTAGCAATGGTTAA 1456
Query 1434 GAGGATGATGGAAGAAGGGAAAGATGTTCAAAGTCAGTATTATTCACAGACAAAGGATTT 1493
||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||
Sbjct 1457 GAGGATGATGGAAGAAGGGAAAGATATTCAGAGTGAGTATTATTCACAGACAAAGGATTT 1516
Query 1494 GAAAAAACTTGAGATTATACATGAAAAA 1521
||||||||||||||||||| |||||||
Sbjct 1517 GAAAAAACTTGAGATTATA--TGAAAAA 1542
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57287728480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5