BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32760.1
Length=1837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482212 jgi|Araly1|482212|fgenesh2_kg.4__1272__AT2G32760.1 2468 0.0
> Ahg482212 jgi|Araly1|482212|fgenesh2_kg.4__1272__AT2G32760.1
Length=1798
Score = 2468 bits (1336), Expect = 0.0
Identities = 1687/1847 (91%), Gaps = 62/1847 (3%)
Strand=Plus/Plus
Query 1 CTGACCCGGAAGTTTCTAATCTCTC-TCTCTTTCCTAAAGTAACAAACTTTAAATTTTCT 59
||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||
Sbjct 1 CTGACCCGGAAGTTTCTAATCTC-CATCTCTTTCCTAAAGTAACAAACTTTAAAATTTCT 59
Query 60 GCAAAATCGAACAACGAATCATCAGCCCGAGAAGCTTCTTCAATCCTGTAAATTTTTCAT 119
|||||||||||||||| | ||||||| ||||||||||||||||||||
Sbjct 60 GCAAAATCGAACAACG-A--ATCAGCCTGAGAAGCTTCTTCAATCCTG------------ 104
Query 120 TCTACGTACCAATCTCTCATTTC-CCAGATTCGTTTCTTGCTTCCATTGCTCTTCCTTTG 178
| ||| |||||||||||||| || ||||||||||| |||| | || |||||||||||
Sbjct 105 --T--GTATCAATCTCTCATTTCTCC-GATTCGTTTCTAGCTTTCGTTTCTCTTCCTTTG 159
Query 179 TACCAATCATCATCTCCAGGTGATCGG-TTTATTAAAAATTAGGGTTTTTGATTGTTCTA 237
|||||||||||||||||||||||||| ||| || ||| |||||||||||||||||||||
Sbjct 160 AACCAATCATCATCTCCAGGTGATCGGTTTTCTT-AAAGTTAGGGTTTTTGATTGTTCTA 218
Query 238 ATCCGATCTCTCGGTTCCTTTAAGATTGATGATGAATTTCGAAGCGTGATATGAAAAGAT 297
|||||||||||||||||| ||||||||| ||||||| ||||| |||||||||||||||||
Sbjct 219 ATCCGATCTCTCGGTTCCGTTAAGATTGGTGATGAAATTCGAGGCGTGATATGAAAAGAT 278
Query 298 CTGAAGACTTGATGTCAGAACTTGCGTTGCGTGGGTTCCGAGATAATTGTTGATGGAAAG 357
||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 279 CTGGAGACTTGATGCCAGAACTTGCGTTGCGTGGGTTCCGAGATCATTGTTGATGGAAGG 338
Query 358 AGTATCAGAGCGAAGTTTGTCAGAAAATTTGAGAAGAAGCGATCGAGAAGATGGGAAGAT 417
|| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 339 AGAATCAGAGAGAAGTTTGTCAGAAAATTTGAGAAGAAGCGATCGAGAAGATGTGAAGAT 398
Query 418 TATAGAATGGGAAGAATTCGACCATGAGCTTACGAGGTTATGGAGTCTTTCTTCTGCTAT 477
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
Sbjct 399 TATAGAATGGGAAGAATTTGACCATGAGCTCACGAGGTTATGGAGTCTTTCTTCTGCTCT 458
Query 478 GAAATTAGCCACAGAGAGGAAACAAATCCTGCAACCGAAACTTGAGTCTCTTATTCAGGT 537
||||||||| ||||||| ||| ||||||||||| || |||||||||||||||||||||||
Sbjct 459 GAAATTAGCAACAGAGAAGAAGCAAATCCTGCAGCCCAAACTTGAGTCTCTTATTCAGGT 518
Query 538 TAGTACTGAATCATTGAGACGCACTAATGAACTTGAAGAAATGCGTCAGAGGCTTGAAGC 597
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 519 TAGTACTGAATCATTGAGACGCACTAATGAACTTGAAGAAATGCGCCAGAGGCTGGAAGC 578
Query 598 AAGAAAATTGTTGGTGGACAAGACATCAGTTGCTTGCAAAGTTACTGAGCAGGATGTTAA 657
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 579 AAGAAAATTGCTGGTGGACAAGACATCAATTGCTTGCAAAGTTACTGAGCAGGATGTTAT 638
Query 658 AAAGAAAGAGGAGAATCTTAGTACAGAAGTGAGGTCTTTGCTAGTAGGCGGAACAACTCT 717
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 639 AAAGAAAGAGGATAATCTTAGTACAGAAGTGAGATCTTTGCTAGTAGGCGGAACAACTCT 698
Query 718 TTCGATCGCTAAAAGCAAATTGCAGGAATCAAACTGCCAACTAGAAGGAGAAAGTGGTTA 777
||| || |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 699 TTCCATTGCTAAAAGTAAATTGCAGGAATCAAACTGCCAGCTAGAAGGAGAGAGTGGTTA 758
Query 778 TGCACATTTAAAGATTGTAACGAATAAGCTGAGAAAGAGGCAGCAGTTCATGGTATCTCA 837
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 759 TGCACATTTAAAGACTGTAACGAATAAGCTGAGAAAGAGGCAGCAGTTCATGATATCTCA 818
Query 838 AGTTTCATTTATCTATCCCTTGAAGATTGAAGCTGGACCTTCACAAGACCAAGAACTGGA 897
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 819 AGTTTCATTTATCTATCCCTTGAAGATTGAGGCTGGACCTTCACAAGACCAAGAACTGGA 878
Query 898 ATCATTTCCTGGTGGCAGTAGA-T--TAGGAACTAAGCCTCTGAGTCAAGGATCTGTGAG 954
|||||||||||||||||||||| | |||| ||||||||||||||||||||||| |||||
Sbjct 879 ATCATTTCCTGGTGGCAGTAGATTAGTAGGGACTAAGCCTCTGAGTCAAGGATCCGTGAG 938
Query 955 AATTCTGGGGTTGCCTTTTAGTATGGCCCCGTTTACAAAGATGAGCTTCTTCACCGACAA 1014
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 939 AATTCTGGGGTTGCCTTTTAGTATGGCCCCGTTTACAAGGATGAGCTTCTTCACTGACAA 998
Query 1015 GAAAGAAGTTCAGAAGTCTGCAACTGCCCTAGGATATGTAGCCCATGCCGTGTCACTAAT 1074
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 999 GAAAGAAGTTCAGAAGTCGGCAACTGCCCTAGGATATGTAGCCCATGCTGTGTCCCTAAT 1058
Query 1075 AGCTCCTTACTTGAGAGTGCCAATTCGTTATCCTTTG-TGCCTGGGGGGTTCCAAAACAT 1133
|||||||||||||||| |||| ||||||||||||||| | ||| || |||||||||||||
Sbjct 1059 AGCTCCTTACTTGAGAATGCCTATTCGTTATCCTTTGCT-CCTAGGTGGTTCCAAAACAT 1117
Query 1134 ACATTCGAGACTATGCACCTTACATTGAGCCTTCACCATCAGACATGTCTCCGATTACCA 1193
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1118 ACATTCGAGACTATGCACCTTATATTGAGCCTTCACCATCAGACATGTCTCCGATTACCA 1177
Query 1194 CGCTTTCCCAAAATAT-TAACTTTGTAGAGTTTCCTCTGTTTCTGGATGGTCAAGATACA 1252
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 CGCTTTCCCAAAAT-TCTAACTTTGTAGAGTTTCCTCTGTTTCTGGATGGTCAAGATACA 1236
Query 1253 ACACGAGCTGCCTATGCTGTCTTCTTACTAAACAAGAACATCGAGCAACTCTTGAACTTT 1312
|||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1237 ACACGAGCTGCCTACGCTGTCTTCTTATTAAACAAGAACATCGAGCAACTCCTGAACTTT 1296
Query 1313 GTGGGGGAAAATAGTCTAGGACCACGTCAGGTTCTAGCAAACCTGAAGGAGCTAATTCGA 1372
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 GTTGGGGAAAATAGTCTAGGACCACGTCAGGTTCTAGCAAACCTGAAGGAGCTAATTCGA 1356
Query 1373 ATCATCCAATCTCCAGATTATATCGATTATTTatgacgatgatgatgatgacgacgaaaa 1432
|||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| ||
Sbjct 1357 ATCATCCAATCTCCAGATTATATCGATTATTTATGATGATGACGATGATGATTACGACAA 1416
Query 1433 taatgacgatgatgaAGATATCAATCCATTCCTTCTCACACATCTTCCAGAGTTCCAGTG 1492
|||||| ||||||||||||||| |||| |||||||||||||||||||| | || ||
Sbjct 1417 TAATGATGATGATGAAGATATCGATCCTTTCCTTCTCACACATCTTCC-G-GT----GT- 1469
Query 1493 TCTCTTCTTGTTTA-TTGAATCATCTCAAGTCAGACACTTTGTGGAGGTAAAAAAGTACA 1551
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1470 -CTCTTCTT-TTTCCTTGAATCATCTCAAGTCAGACACTTTGTGGAGGTAAAAAAGTAAA 1527
Query 1552 AATAATTGATTTTGTTAGAGAAATTTTAGACATGGAAATTCTCTTTAGGATGAGACTCCT 1611
||| ||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1528 AATTATTTATTTCGTTATAGAAATTTTAGACATGGAAATTCTCTTTAGGATGAGACTCCT 1587
Query 1612 CCTCTCTAGATGTGATGTTTTTGGTTTGGAGAGACCGACGATAAACGAAA-GCTTAGTCT 1670
| ||| |||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 1588 C-TCT--AGATGTGATGTTTTTGGTTTGGAGAGACAGACGATAAACGAAAAGCGTAGTCT 1644
Query 1671 ATTATACAGTTCTTTCTTAAGTTCTAACAGCTGTATTAGtttttttGTTTCCCTTTATCT 1730
||||||||||| ||| || |||||| ||| || ||||||| || || || |||
Sbjct 1645 ATTATACAGTTTTTTTTTTAGTTCTTTTTT-TGTTTTCCTTTTTTT-TT-CC-TTC-TCT 1699
Query 1731 TTTTGTGCTAGTTGTACCATTTGAAATATGTTTGAATTTGTAAC--AATGAGCC-TGTTG 1787
|| |||||||| | | ||||||||||||||||||||||||| || | | || ||
Sbjct 1700 TT--GTGCTAGTA-T-C-ATTTGAAATATGTTTGAATTTGTAAGTTAACAA-CAATGATG 1753
Query 1788 TTGAGTCAGTACAATTTTCAACGTACTGTTGGAATACGAAACGTGTG 1834
||||||||||||||||||||||||||| ||||| | ||||||||
Sbjct 1754 --GAGTCAGTACAATTTTCAACGTACTGTAGGAATGTGTAACGTGTG 1798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68981433695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5